Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006476

Physical Location & Seq

Genomic Coordinates Forward (+)

7498196 .. 7499151

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGGGCAATGTGTATGTTCAGTTTAGGGAGGAAGAACATGCTGCAAATGCGCTTCGGAACCTGAGTGGAAGATTTTATGGTGGTCGTCCTATCATTGTTGACTATTCACCGGTGACAGACTTCCGTGAAGCCACCTGCAGGCAATACGAGGAGAATACATGCAACCGTGGTGGATACTGCAATTTTATGCACCTGAAAAGGATTGGAAGGGAATTGAGGCGTGAATTATTTGGGAGCTATAAGAGAAGGCATAGTCGCAGTCGAAGTAGGAGTCGCAGCCCTTACCGGCATCGTAGCTATGAAGAGCGCTCTCATGGTAGCCGGGGTCATAGTAGAAGGTATGATGATGAGGATCGCTATCCTGAAAGCTGGAGCCGGAGGAACAAGACTGTAAGCCCCGGTCGAAGGAAAGGACGCAGTAGAAGTAGAAGCCCTGGAAGAAGAAGAAACCACAGTCCGATTAGAGAAGGAAGTGAAGAGAGACGGGCAAAGATTGAGCAGTGGAACAGGGAAAGAGAACAGGATGAAAATGCTAGTAAGGTCAACACTGACCGAACCAACACTAATGGGCATGCACAAATGGAACAACAGTACAATGGCCATGAGGAACAGCAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

208

Amino Acids

24.85

Weight (kDa)

10.4

Isoelectric Point (pI)

97.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27650 AT1G27650
fragaria_vesca	FvH4_3g29970 FvH4_3g29970 FvH4_3g29970 FvH4_3g29970
malus_domestica	MD03G1134200.v1.1 MD11G1156400.v1.1
prunus_persica	Prupe.6G118600_v2.0.a1 Prupe.6G118600_v2.0.a1
pyrus_communis	pycom03g09020 pycom11g12700
rosa_chinensis	RchiOBHm_Chr5g0055381 RchiOBHm_Chr5g0055431
rosa_laevigata	RLG00000034985
rosa_multiflora	Rmu_sc0001673.1_g000027 Rmu_sc0014407.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024920 Rroxscaffold_1G00024960
rosa_samantha	Rh5AG362400 Rh5BG374600 Rh5CG396200 Rh5CG396400 Rh5DG387700
rosa_wichuraiana	Rw5G034090 Rw5G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	601
AfaI	GTAC	1 cut(s)	596
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	141, 408
AgeI	ACCGGT	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	3 cut(s)	240, 300, 372
AluI	AGCT	3 cut(s)	240, 300, 372
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	363
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	2 cut(s)	44, 279
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AsiGI	ACCGGT	1 cut(s)	112
AspLEI	GCGC	2 cut(s)	55, 312
AsuC2I	CCSGG	2 cut(s)	326, 402
AsuHPI	GGTGA	2 cut(s)	102, 127
BalI	TGGCCA	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	31, 291
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	170
BcnI	CCSGG	2 cut(s)	326, 402
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	2 cut(s)	45, 280
BlsI	GCNGC	2 cut(s)	46, 281
Bme1390I	CCNGG	3 cut(s)	326, 402, 438
BmiI	GGNNCC	2 cut(s)	62, 377
BmrFI	CCNGG	3 cut(s)	326, 402, 438
BmsI	GCATC	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	394
BpuMI	CCSGG	2 cut(s)	326, 402
BsaBI	GATNNNNATC	2 cut(s)	354, 360
BsaJI	CCNNGG	4 cut(s)	169, 325, 400, 436
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 408
Bse118I	RCCGGY	2 cut(s)	112, 288
Bse3DI	GCAATG	1 cut(s)	16
Bse8I	GATNNNNATC	2 cut(s)	354, 360
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	4 cut(s)	169, 325, 400, 436
BseGI	GGATG	1 cut(s)	532
BseJI	GATNNNNATC	2 cut(s)	354, 360
BseLI	CCNNNNNNNGG	2 cut(s)	141, 408
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	31, 291
Bsh1285I	CGRYCG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	603
BshTI	ACCGGT	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	406
BsiSI	CCGG	5 cut(s)	113, 289, 325, 379, 402
BslI	CCNNNNNNNGG	2 cut(s)	141, 408
BsmAI	GTCTC	1 cut(s)	478
BsmBI	CGTCTC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	603
Bsp143I	GATC	1 cut(s)	355
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	62, 377
BspMAI	CTGCAG	1 cut(s)	143
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	16
BsrFI	RCCGGY	2 cut(s)	112, 288
BssAI	RCCGGY	2 cut(s)	112, 288
BssECI	CCNNGG	4 cut(s)	169, 325, 400, 436
BssMI	GATC	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	4 cut(s)	170, 394, 458, 594
Bst6I	CTCTTC	2 cut(s)	300, 474
BstC8I	GCNNGC	2 cut(s)	143, 576
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	532
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	55, 312
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	1 cut(s)	355
BstMCI	CGRYCG	1 cut(s)	406
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	3 cut(s)	44, 165, 578
BstSCI	CCNGG	3 cut(s)	324, 400, 436
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	31, 291
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	603
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	2 cut(s)	509, 549
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	143, 576
CfoI	GCGC	2 cut(s)	55, 312
Cfr10I	RCCGGY	2 cut(s)	112, 288
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	595
CspAI	ACCGGT	1 cut(s)	112
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	5 cut(s)	41, 162, 317, 575, 605
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	2 cut(s)	300, 474
EarI	CTCTTC	2 cut(s)	300, 474
Eco47III	AGCGCT	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	478
FaeI	CATG	5 cut(s)	44, 165, 320, 578, 608
FatI	CATG	5 cut(s)	40, 161, 316, 574, 604
Fnu4HI	GCNGC	2 cut(s)	45, 280
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	2 cut(s)	45, 280
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	2 cut(s)	54, 311
GluI	GCNGC	2 cut(s)	45, 280
GsuI	CTGGAG	1 cut(s)	394
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	5 cut(s)	113, 289, 325, 379, 402
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	2 cut(s)	55, 312
Hin1II	CATG	5 cut(s)	44, 165, 320, 578, 608
Hin6I	GCGC	2 cut(s)	53, 310
HinP1I	GCGC	2 cut(s)	53, 310
HincII	GTYRAC	2 cut(s)	103, 547
HindII	GTYRAC	2 cut(s)	103, 547
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	5 cut(s)	113, 289, 325, 379, 402
HphI	GGTGA	2 cut(s)	102, 127
Hpy166II	GTNNAC	2 cut(s)	103, 547
Hpy188I	TCNGA	2 cut(s)	60, 462
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	103, 547
HpyAV	CCTTC	5 cut(s)	204, 243, 333, 402, 464
HpyCH4III	ACNGT	4 cut(s)	170, 394, 458, 594
HpyCH4V	TGCA	6 cut(s)	47, 141, 165, 183, 193, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	5 cut(s)	44, 165, 320, 578, 608
HspAI	GCGC	2 cut(s)	53, 310
Kzo9I	GATC	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	2 cut(s)	237, 375
Lsp1109I	GCAGC	2 cut(s)	31, 291
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	7 cut(s)	47, 84, 317, 453, 456, 459, 491
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	3 cut(s)	184, 215, 227
MluNI	TGGCCA	1 cut(s)	603
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	6 cut(s)	25, 145, 213, 346, 375, 601
Mox20I	TGGCCA	1 cut(s)	603
MscI	TGGCCA	1 cut(s)	603
Msp20I	TGGCCA	1 cut(s)	603
MspI	CCGG	5 cut(s)	113, 289, 325, 379, 402
MspR9I	CCNGG	3 cut(s)	326, 402, 438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	2 cut(s)	326, 402
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	5 cut(s)	44, 165, 320, 578, 608
NlaIV	GGNNCC	2 cut(s)	62, 377
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	3 cut(s)	44, 165, 578
PaeI	GCATGC	1 cut(s)	578
PaqCI	CACCTGC	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	300
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	46, 281
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	62, 377
PstI	CTGCAG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SapI	GCTCTTC	1 cut(s)	300
SatI	GCNGC	2 cut(s)	45, 280
Sau3AI	GATC	1 cut(s)	355
SbfI	CCTGCAGG	1 cut(s)	143
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	326, 402, 438
SdaI	CCTGCAGG	1 cut(s)	143
SetI	ASST	8 cut(s)	66, 140, 198, 242, 302, 344, 374, 546
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	112
SphI	GCATGC	1 cut(s)	578
Sse8387I	CCTGCAGG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	184, 215, 227
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	3 cut(s)	324, 400, 436
TaaI	ACNGT	4 cut(s)	170, 394, 458, 594
TaqI	TCGA	2 cut(s)	265, 406
TaqII	GACCGA	1 cut(s)	570
TasI	AATT	3 cut(s)	184, 215, 227
TatI	WGTACW	1 cut(s)	594
TscAI	CASTG	2 cut(s)	509, 556
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	44, 279
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	318, 543
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	509, 556
XceI	RCATGY	3 cut(s)	44, 165, 578
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.