Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006476

Physical Location & Seq

Genomic Coordinates Forward (+)

31076125 .. 31081991

Gene Structure 5867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTATTGCTCGCTTTCTCTCTCACCGCCGAAACCATTCACCAAAACGGAAGCAAAACTGCACCAGCAAACTCCTCCCTCCTCAGGCCACCTCCAGACGTCGGACCACTCCCCTTGGCTTCGCCTCAGGCTGCTCTACCTGCTGGACGTTGTTGTTCCCTCCGCATGGCCTCAAGATCCGCAAACCAGCTCGGACCGGATTGCACCCGAAACTTTCAAACAGGAATTTTATGAGGATCTCTTTCAAGAGTTGAGTAAGTATGGGAAAATTGAAAGCCTGAATGTCTGCGACAACCTAGCTGACCACATGGTGGGCAATGTGTATGGTCAGTTCAGGGAGGAAGAACATGCTGCAAATGCACTCAAGAATCTGACTGGAAGATTTTTTGCTGGGCGTCCTATCATTGCTGACTTCTCTCCGGTGACAGACTTCCGTGAAGCCACCTGCAGGCAATATGAGGAAAATGCATGCAATCGTGGTGGATACTGCAACTTTATGCATCTGAAAAGGATTGGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

173

Amino Acids

19.82

Weight (kDa)

6.3

Isoelectric Point (pI)

56.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27650 AT1G27650
fragaria_vesca	FvH4_3g29970 FvH4_3g29970 FvH4_3g29970 FvH4_3g29970
malus_domestica	MD03G1134200.v1.1 MD11G1156400.v1.1
prunus_persica	Prupe.6G118600_v2.0.a1 Prupe.6G118600_v2.0.a1
pyrus_communis	pycom03g09020 pycom11g12700
rosa_chinensis	RchiOBHm_Chr5g0055381 RchiOBHm_Chr5g0055431
rosa_laevigata	RLG00000034985
rosa_multiflora	Rmu_sc0001673.1_g000027 Rmu_sc0014407.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024920 Rroxscaffold_1G00024960
rosa_samantha	Rh5AG362400 Rh5BG374600 Rh5CG396200 Rh5CG396400 Rh5DG387700
rosa_wichuraiana	Rw5G034090 Rw5G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
AatII	GACGTC	1 cut(s)	101
Acc36I	ACCTGC	2 cut(s)	147, 452
AccB7I	CCANNNNNTGG	1 cut(s)	310
AciI	CCGC	3 cut(s)	26, 162, 179
AclWI	GGATC	2 cut(s)	170, 243
AcsI	RAATTY	1 cut(s)	224
AcyI	GRCGYC	2 cut(s)	98, 394
AdeI	CACNNNGTG	1 cut(s)	310
AfiI	CCNNNNNNNGG	5 cut(s)	83, 100, 165, 310, 447
AgsI	TTSAA	3 cut(s)	217, 245, 272
AluBI	AGCT	2 cut(s)	189, 299
AluI	AGCT	2 cut(s)	189, 299
AlwI	GGATC	2 cut(s)	170, 243
AoxI	GGCC	2 cut(s)	85, 167
ApeKI	GCWGC	2 cut(s)	130, 350
ApoI	RAATTY	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	103, 193
AsuHPI	GGTGA	3 cut(s)	15, 31, 433
AvaII	GGWCC	2 cut(s)	103, 193
AxyI	CCTNAGG	2 cut(s)	82, 125
BbvI	GCAGC	2 cut(s)	117, 337
BciVI	GTATCC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	445
BfuAI	ACCTGC	2 cut(s)	147, 452
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	2 cut(s)	131, 351
BlsI	GCNGC	2 cut(s)	132, 352
Bme18I	GGWCC	2 cut(s)	103, 193
BmgT120I	GGNCC	2 cut(s)	103, 193
BmsI	GCATC	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	156, 347
BsaHI	GRCGYC	2 cut(s)	98, 394
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	2 cut(s)	195, 418
Bsc4I	CCNNNNNNNGG	5 cut(s)	83, 100, 165, 310, 447
Bse1I	ACTGG	1 cut(s)	379
Bse21I	CCTNAGG	2 cut(s)	82, 125
Bse3DI	GCAATG	2 cut(s)	322, 402
BseDI	CCNNGG	1 cut(s)	113
BseLI	CCNNNNNNNGG	5 cut(s)	83, 100, 165, 310, 447
BseMI	GCAATG	2 cut(s)	322, 402
BseMII	CTCAG	2 cut(s)	96, 139
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	2 cut(s)	63, 70
BseXI	GCAGC	2 cut(s)	117, 337
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	87, 169
BsiSI	CCGG	2 cut(s)	196, 419
BslI	CCNNNNNNNGG	5 cut(s)	83, 100, 165, 310, 447
BsnI	GGCC	2 cut(s)	87, 169
Bsp143I	GATC	2 cut(s)	175, 235
BspACI	CCGC	3 cut(s)	26, 162, 179
BspANI	GGCC	2 cut(s)	87, 169
BspCNI	CTCAG	2 cut(s)	95, 138
BspMAI	CTGCAG	1 cut(s)	449
BspMI	ACCTGC	2 cut(s)	147, 452
BspPI	GGATC	2 cut(s)	170, 243
BsrDI	GCAATG	2 cut(s)	322, 402
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	175, 235
BssNI	GRCGYC	2 cut(s)	98, 394
BssT1I	CCWWGG	1 cut(s)	113
BstACI	GRCGYC	2 cut(s)	98, 394
BstC8I	GCNNGC	3 cut(s)	11, 449, 469
BstDEI	CTNAG	2 cut(s)	82, 125
BstKTI	GATC	2 cut(s)	178, 238
BstMBI	GATC	2 cut(s)	175, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 356
BstNSI	RCATGY	2 cut(s)	350, 471
BstSFI	CTRYAG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	117, 337
BstX2I	RGATCY	2 cut(s)	175, 235
BstYI	RGATCY	2 cut(s)	175, 235
Bsu36I	CCTNAGG	2 cut(s)	82, 125
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	87, 169
BveI	ACCTGC	2 cut(s)	147, 452
Cac8I	GCNNGC	3 cut(s)	11, 449, 469
Cfr13I	GGNCC	2 cut(s)	103, 193
CpoI	CGGWCCG	1 cut(s)	193
CseI	GACGC	1 cut(s)	383
CspCI	CAANNNNNGTGG	4 cut(s)	95, 130, 460, 495
CspI	CGGWCCG	1 cut(s)	193
CviAII	CATG	4 cut(s)	165, 307, 347, 468
CviJI	RGCY	8 cut(s)	87, 118, 130, 169, 189, 276, 299, 440
CviKI_1	RGCY	8 cut(s)	87, 118, 130, 169, 189, 276, 299, 440
DdeI	CTNAG	2 cut(s)	82, 125
DpnI	GATC	2 cut(s)	177, 237
DpnII	GATC	2 cut(s)	175, 235
DraIII	CACNNNGTG	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	103, 193
Eco81I	CCTNAGG	2 cut(s)	82, 125
EcoT14I	CCWWGG	1 cut(s)	113
EcoT22I	ATGCAT	2 cut(s)	469, 501
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	4 cut(s)	168, 310, 350, 471
FaiI	YATR	9 cut(s)	166, 231, 261, 308, 324, 348, 456, 469, 497
FatI	CATG	4 cut(s)	164, 306, 346, 467
Fnu4HI	GCNGC	2 cut(s)	131, 351
Fsp4HI	GCNGC	2 cut(s)	131, 351
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	2 cut(s)	131, 351
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	87, 169
HapII	CCGG	2 cut(s)	196, 419
HgaI	GACGC	1 cut(s)	383
Hin1I	GRCGYC	2 cut(s)	98, 394
Hin1II	CATG	4 cut(s)	168, 310, 350, 471
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	196, 419
HphI	GGTGA	3 cut(s)	15, 31, 433
Hpy188I	TCNGA	4 cut(s)	103, 193, 372, 504
Hpy188III	TCNNGA	4 cut(s)	94, 173, 245, 364
Hpy99I	CGWCG	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	98, 147
HpyCH4V	TGCA	9 cut(s)	61, 203, 353, 359, 447, 467, 471, 489, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 356
HpyF3I	CTNAG	2 cut(s)	82, 125
HpySE526I	ACGT	2 cut(s)	98, 147
Hsp92I	GRCGYC	2 cut(s)	98, 394
Hsp92II	CATG	4 cut(s)	168, 310, 350, 471
Kzo9I	GATC	2 cut(s)	175, 235
Lsp1109I	GCAGC	2 cut(s)	117, 337
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	2 cut(s)	98, 147
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	2 cut(s)	177, 237
MboI	GATC	2 cut(s)	175, 235
MboII	GAAGA	2 cut(s)	353, 390
MflI	RGATCY	2 cut(s)	175, 235
MluCI	AATT	2 cut(s)	224, 267
MmeI	TCCRAC	1 cut(s)	81
Mph1103I	ATGCAT	2 cut(s)	469, 501
MroXI	GAANNNNTTC	1 cut(s)	35
MspI	CCGG	2 cut(s)	196, 419
MwoI	GCNNNNNNNGC	2 cut(s)	139, 356
NdeII	GATC	2 cut(s)	175, 235
NlaIII	CATG	4 cut(s)	168, 310, 350, 471
NmuCI	GTSAC	1 cut(s)	421
NsiI	ATGCAT	2 cut(s)	469, 501
NspI	RCATGY	2 cut(s)	350, 471
PaeI	GCATGC	1 cut(s)	471
PaqCI	CACCTGC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	367
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	132, 352
PspFI	CCCAGC	1 cut(s)	389
PspPI	GGNCC	2 cut(s)	103, 193
PsrI	GAACNNNNNNTAC	2 cut(s)	314, 346
PstI	CTGCAG	1 cut(s)	449
PsuI	RGATCY	2 cut(s)	175, 235
Rsr2I	CGGWCCG	1 cut(s)	193
RsrII	CGGWCCG	1 cut(s)	193
SatI	GCNGC	2 cut(s)	131, 351
Sau3AI	GATC	2 cut(s)	175, 235
Sau96I	GGNCC	2 cut(s)	103, 193
SbfI	CCTGCAGG	1 cut(s)	449
SdaI	CCTGCAGG	1 cut(s)	449
SetI	ASST	9 cut(s)	93, 101, 141, 150, 191, 297, 301, 446, 521
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	445
SinI	GGWCC	2 cut(s)	103, 193
SmlI	CTYRAG	2 cut(s)	171, 362
SmoI	CTYRAG	2 cut(s)	171, 362
SphI	GCATGC	1 cut(s)	471
Sse8387I	CCTGCAGG	1 cut(s)	449
Sse9I	AATT	2 cut(s)	224, 267
SsiI	CCGC	3 cut(s)	26, 162, 179
SspMI	CTAG	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	113
TaiI	ACGT	2 cut(s)	101, 150
TasI	AATT	2 cut(s)	224, 267
TfiI	GAWTC	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	130, 350
Tsp45I	GTSAC	1 cut(s)	421
TspGWI	ACGGA	2 cut(s)	62, 422
Van91I	CCANNNNNTGG	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	103, 193
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	2 cut(s)	350, 471
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	296
ZraI	GACGTC	1 cut(s)	99
Zsp2I	ATGCAT	2 cut(s)	469, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.