Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006476

Physical Location & Seq

Genomic Coordinates Forward (+)

8726604 .. 8730218

Gene Structure 3615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G118600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCAGAGCATTTGGCTTCCATATTTGGGACAGAGAAGGACAGGGTGAACTGCCCTTTCTACTTTAAGATAGGGGCGTGCAGGCATGGAGATCGCTGCTCCAGACTCCATACCAAGCCCAGCGTCAGCCCAACCCTCTTGCTCTCCAACATGTACCAGAGGCCCGATATGATCACTCCCGGCGTCGACGCTCAGGGCCAGCCCATCGACCCCCGCCAGATCCAAAGACACTTTGAGGAATTTTATGAGGATCTGTTTCAAGAGCTGAGTAAGTACGGTGATATCGAAAGTCTGAATGTCTGTGACAACCTAGCCGACCACATGGTGGGCAATGTGTACGTTCAGTTTAGGGAGGAGGAACATGCTTCAAATGCACTTCAGAACCTAAGTGGAAGATTTTATGCTGGTCGTCCTATCATTGTTGACTTTTCTCCAGTGACGGACTTCCGTGAAGCCACCTGCAGGCAGTATGAGGAGAATACATGCAACCGTGGTGGATACTGCAATTTTATGCACTTGAAAAGGATCAGCAGGGAATTGAGGCATGAGTTATTTGGGAGCTATCGGAGAAGGCATAGCCACAGTCGAAGCAGGAGTCGAAGCCCTTACAGGCATCGTAGCTATGAAGAGCGCTCTCATGGGAGCCGTGGTCATAGCAGAAGGTATGATGATGAGGATCGCTATCCTGAAAGCTGGAGCCGAAGGAACAAGACTGTTAGCCCTGGTGGAAGGAGAGGACGCAGTAGAAGCAGAAGCCCTGATGGAAGGAGACGGCGCAGTAGAAGCAGAAGCCCTGGAAGGAGAAGAAACCATAGTCCAGTTAGAGAAGGCAGTGAGGAGAGACGGGCCAAGATTGAGCAGTGGAACAGGGAAAGAGAACAAAATGAAAATTCTAGCAATTATGAGCATCAGCAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

307

Amino Acids

36.3

Weight (kDa)

9.77

Isoelectric Point (pI)

92.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27650 AT1G27650
fragaria_vesca	FvH4_3g29970 FvH4_3g29970 FvH4_3g29970 FvH4_3g29970
malus_domestica	MD03G1134200.v1.1 MD11G1156400.v1.1
prunus_persica	Prupe.6G118600_v2.0.a1 Prupe.6G118600_v2.0.a1
pyrus_communis	pycom03g09020 pycom11g12700
rosa_chinensis	RchiOBHm_Chr5g0055381 RchiOBHm_Chr5g0055431
rosa_laevigata	RLG00000034985
rosa_multiflora	Rmu_sc0001673.1_g000027 Rmu_sc0014407.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024920 Rroxscaffold_1G00024960
rosa_samantha	Rh5AG362400 Rh5BG374600 Rh5CG396200 Rh5CG396400 Rh5DG387700
rosa_wichuraiana	Rw5G034090 Rw5G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	4 cut(s)	214, 258, 533, 684
AcsI	RAATTY	2 cut(s)	239, 889
AcuI	CTGAAG	1 cut(s)	362
AcyI	GRCGYC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	3 cut(s)	155, 275, 338
AfeI	AGCGCT	1 cut(s)	632
AfiI	CCNNNNNNNGG	3 cut(s)	27, 325, 462
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	260, 369, 520
AjnI	CCWGG	2 cut(s)	721, 793
AluBI	AGCT	4 cut(s)	265, 561, 621, 693
AluI	AGCT	4 cut(s)	265, 561, 621, 693
Alw26I	GTCTC	2 cut(s)	763, 835
AlwI	GGATC	4 cut(s)	214, 258, 533, 684
Aor51HI	AGCGCT	1 cut(s)	632
AoxI	GGCC	3 cut(s)	161, 196, 846
ApeKI	GCWGC	2 cut(s)	96, 913
ApoI	RAATTY	2 cut(s)	239, 889
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AspLEI	GCGC	2 cut(s)	633, 777
AspS9I	GGNCC	3 cut(s)	162, 196, 846
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	58, 290
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	2 cut(s)	212, 755
BceAI	ACGGC	2 cut(s)	630, 788
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	2 cut(s)	723, 795
BciVI	GTATCC	1 cut(s)	491
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	763, 835
BfaI	CTAG	2 cut(s)	311, 894
BfmI	CTRYAG	1 cut(s)	460
BfoI	RGCGCY	1 cut(s)	634
BfuAI	ACCTGC	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	2 cut(s)	97, 914
BlsI	GCNGC	2 cut(s)	98, 915
Bme1390I	CCNGG	3 cut(s)	180, 723, 795
BmgT120I	GGNCC	3 cut(s)	162, 196, 846
BmiI	GGNNCC	2 cut(s)	644, 698
BmrFI	CCNGG	3 cut(s)	180, 723, 795
BmsI	GCATC	2 cut(s)	622, 916
BpmI	CTGGAG	3 cut(s)	85, 417, 715
Bpu10I	CCTNAGC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	2 cut(s)	675, 681
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	490, 646, 721, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 325, 462
Bse1I	ACTGG	2 cut(s)	434, 818
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	2 cut(s)	675, 681
BseBI	CCWGG	2 cut(s)	723, 795
BseDI	CCNNGG	4 cut(s)	490, 646, 721, 793
BseJI	GATNNNNATC	2 cut(s)	675, 681
BseLI	CCNNNNNNNGG	3 cut(s)	27, 325, 462
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	206, 257
BseNI	ACTGG	2 cut(s)	434, 818
BseRI	GAGGAG	3 cut(s)	368, 488, 851
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	163, 198, 848
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	27, 325, 462
BsmAI	GTCTC	2 cut(s)	763, 835
BsmBI	CGTCTC	2 cut(s)	763, 835
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	163, 198, 848
Bsp143I	GATC	6 cut(s)	91, 171, 219, 250, 525, 676
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	3 cut(s)	163, 198, 848
BspCNI	CTCAG	2 cut(s)	205, 258
BspLI	GGNNCC	2 cut(s)	644, 698
BspMAI	CTGCAG	1 cut(s)	464
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	4 cut(s)	214, 258, 533, 684
BspQI	GCTCTTC	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	434, 818
BssECI	CCNNGG	4 cut(s)	490, 646, 721, 793
BssMI	GATC	6 cut(s)	91, 171, 219, 250, 525, 676
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	723, 795
Bst4CI	ACNGT	4 cut(s)	278, 491, 584, 715
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	79, 83, 200, 464
BstDEI	CTNAG	3 cut(s)	192, 266, 386
BstDSI	CCRYGG	2 cut(s)	490, 646
BstH2I	RGCGCY	1 cut(s)	634
BstHHI	GCGC	2 cut(s)	633, 777
BstKTI	GATC	6 cut(s)	94, 174, 222, 253, 528, 679
BstMAI	GTCTC	2 cut(s)	763, 835
BstMBI	GATC	6 cut(s)	91, 171, 219, 250, 525, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 747, 783, 913
BstNI	CCWGG	2 cut(s)	723, 795
BstNSI	RCATGY	3 cut(s)	154, 365, 486
BstSCI	CCNGG	3 cut(s)	178, 721, 793
BstSFI	CTRYAG	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	2 cut(s)	219, 250
BstYI	RGATCY	2 cut(s)	219, 250
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	3 cut(s)	163, 198, 848
BtgI	CCRYGG	2 cut(s)	490, 646
BtsI	GCAGTG	2 cut(s)	838, 866
BtsIMutI	CAGTG	3 cut(s)	441, 838, 866
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	4 cut(s)	79, 83, 200, 464
CfoI	GCGC	2 cut(s)	633, 777
Cfr13I	GGNCC	3 cut(s)	162, 196, 846
CseI	GACGC	4 cut(s)	112, 172, 197, 747
Csp6I	GTAC	3 cut(s)	154, 274, 337
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	7 cut(s)	86, 151, 322, 362, 483, 545, 638
CviQI	GTAC	3 cut(s)	154, 274, 337
DdeI	CTNAG	3 cut(s)	192, 266, 386
DpnI	GATC	6 cut(s)	93, 173, 221, 252, 527, 678
DpnII	GATC	6 cut(s)	91, 171, 219, 250, 525, 676
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco32I	GATATC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	721, 793
EcoRV	GATATC	1 cut(s)	283
Esp3I	CGTCTC	2 cut(s)	763, 835
FaeI	CATG	7 cut(s)	89, 154, 325, 365, 486, 548, 641
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	7 cut(s)	85, 150, 321, 361, 482, 544, 637
FauI	CCCGC	1 cut(s)	221
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	97, 914
Fsp4HI	GCNGC	2 cut(s)	97, 914
FspBI	CTAG	2 cut(s)	311, 894
GlaI	GCGC	2 cut(s)	632, 776
GluI	GCNGC	2 cut(s)	97, 914
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	3 cut(s)	85, 417, 715
HaeII	RGCGCY	1 cut(s)	634
HaeIII	GGCC	3 cut(s)	163, 198, 848
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	4 cut(s)	112, 172, 197, 747
HhaI	GCGC	2 cut(s)	633, 777
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	7 cut(s)	89, 154, 325, 365, 486, 548, 641
Hin6I	GCGC	2 cut(s)	631, 775
HinP1I	GCGC	2 cut(s)	631, 775
HincII	GTYRAC	2 cut(s)	187, 424
HindII	GTYRAC	2 cut(s)	187, 424
HinfI	GANTC	2 cut(s)	105, 595
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	2 cut(s)	58, 290
Hpy166II	GTNNAC	4 cut(s)	49, 187, 337, 424
Hpy188I	TCNGA	3 cut(s)	294, 381, 567
Hpy188III	TCNNGA	3 cut(s)	102, 260, 686
Hpy8I	GTNNAC	4 cut(s)	49, 187, 337, 424
Hpy99I	CGWCG	2 cut(s)	188, 191
HpyAV	CCTTC	8 cut(s)	31, 564, 654, 696, 723, 759, 792, 821
HpyCH4III	ACNGT	4 cut(s)	278, 491, 584, 715
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	6 cut(s)	81, 374, 462, 486, 504, 514
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 747, 783, 913
HpyF3I	CTNAG	3 cut(s)	192, 266, 386
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	7 cut(s)	89, 154, 325, 365, 486, 548, 641
HspAI	GCGC	2 cut(s)	631, 775
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	6 cut(s)	91, 171, 219, 250, 525, 676
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	4 cut(s)	104, 558, 642, 696
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	2 cut(s)	622, 916
MaeI	CTAG	2 cut(s)	311, 894
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	302, 436
MalI	GATC	6 cut(s)	93, 173, 221, 252, 527, 678
MboI	GATC	6 cut(s)	91, 171, 219, 250, 525, 676
MboII	GAAGA	3 cut(s)	405, 638, 816
MflI	RGATCY	2 cut(s)	219, 250
MluCI	AATT	5 cut(s)	239, 505, 536, 889, 898
MlyI	GAGTC	2 cut(s)	99, 604
MmeI	TCCRAC	1 cut(s)	171
MseI	TTAA	1 cut(s)	66
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	3 cut(s)	180, 723, 795
MvaI	CCWGG	2 cut(s)	723, 795
MwoI	GCNNNNNNNGC	4 cut(s)	371, 747, 783, 913
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	6 cut(s)	91, 171, 219, 250, 525, 676
NlaIII	CATG	7 cut(s)	89, 154, 325, 365, 486, 548, 641
NlaIV	GGNNCC	2 cut(s)	644, 698
NmuCI	GTSAC	2 cut(s)	302, 436
NspI	RCATGY	3 cut(s)	154, 365, 486
PaqCI	CACCTGC	1 cut(s)	467
PciI	ACATGT	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	98, 915
PleI	GAGTC	2 cut(s)	99, 603
PpsI	GAGTC	2 cut(s)	99, 603
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	721, 793
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	721, 793
PspN4I	GGNNCC	2 cut(s)	644, 698
PspPI	GGNCC	3 cut(s)	162, 196, 846
PstI	CTGCAG	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	219, 250
RsaI	GTAC	3 cut(s)	155, 275, 338
RsaNI	GTAC	3 cut(s)	154, 274, 337
SalI	GTCGAC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	97, 914
Sau3AI	GATC	6 cut(s)	91, 171, 219, 250, 525, 676
Sau96I	GGNCC	3 cut(s)	162, 196, 846
SbfI	CCTGCAGG	1 cut(s)	464
SchI	GAGTC	2 cut(s)	99, 604
ScrFI	CCNGG	3 cut(s)	180, 723, 795
SdaI	CCTGCAGG	1 cut(s)	464
SetI	ASST	9 cut(s)	267, 312, 342, 387, 461, 563, 623, 665, 695
SfaNI	GCATC	2 cut(s)	622, 916
SfcI	CTRYAG	1 cut(s)	460
SgrDI	CGTCGACG	1 cut(s)	185
Sse8387I	CCTGCAGG	1 cut(s)	464
Sse9I	AATT	5 cut(s)	239, 505, 536, 889, 898
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	2 cut(s)	311, 894
StyD4I	CCNGG	3 cut(s)	178, 721, 793
TaaI	ACNGT	4 cut(s)	278, 491, 584, 715
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	5 cut(s)	186, 207, 285, 586, 598
TasI	AATT	5 cut(s)	239, 505, 536, 889, 898
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	3 cut(s)	441, 838, 866
TseFI	GTSAC	2 cut(s)	302, 436
TseI	GCWGC	2 cut(s)	96, 913
Tsp45I	GTSAC	2 cut(s)	302, 436
TspDTI	ATGAA	2 cut(s)	639, 900
TspGWI	ACGGA	2 cut(s)	437, 455
TspRI	CASTG	3 cut(s)	441, 838, 866
Van91I	CCANNNNNTGG	1 cut(s)	325
XapI	RAATTY	2 cut(s)	239, 889
XceI	RCATGY	3 cut(s)	154, 365, 486
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	2 cut(s)	311, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.