AT1G28150

UPF0426 protein At1g28150

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014155
Physical Location & Seq
Reverse (-)
9834642 .. 9836210
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28150.2

Sequence Viewer

Length: 372 bp
ATGGGTTTTGTCTTAATCTGTACTTGTCCTCCGTCCTCGGGTGTCGTCGTCTCTCAGCTTCACCATCACCAGTTCTCCGCCGGAGTCAAAAGCAATGAACTTTGGTTTCGTCCGACTCGTAGAACCCTAATTTCGAAATCATCTTGTTTCAATCTCCCTCAAGAACCCATTCTCTCCGAAGCTCTCAAGGAGCCAATTGCATTCTTGGGTGGGATGTTTGCTGGACTTCTAAGACTTGATCTAAACGAAGAGCCGCTCAAGGATTGGGTGACGCGAACAGTTGAAGCCTCGGGTATTACAGAAGAAGAAGTTGATGCAGATGGGGTTGTTTCCAATGATGAAGACTCTCCTCAACAGATAGAGATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.58

Weight (kDa)

4.62

Isoelectric Point (pI)

69.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0426 PF26369 60 - 94 5.4e-18 UPF0426 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 256
AccII CGCG 1 cut(s) 274
AciI CCGC 2 cut(s) 78, 254
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 3 cut(s) 151, 284, 368
AluBI AGCT 2 cut(s) 58, 182
AluI AGCT 2 cut(s) 58, 182
Alw26I GTCTC 1 cut(s) 55
Ama87I CYCGRG 2 cut(s) 37, 289
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 53, 59, 280
AsuII TTCGAA 1 cut(s) 134
AvaI CYCGRG 2 cut(s) 37, 289
BbsI GAAGAC 1 cut(s) 348
BccI CCATC 2 cut(s) 72, 314
BcoDI GTCTC 1 cut(s) 55
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
BmeT110I CYCGRG 2 cut(s) 37, 289
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 134
BpuEI CTTGAG 3 cut(s) 144, 170, 242
BsaJI CCNNGG 2 cut(s) 36, 288
BsaXI ACNNNNNCTCC 4 cut(s) 13, 43, 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 100
BseDI CCNNGG 2 cut(s) 36, 288
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 274
BsiHKCI CYCGRG 2 cut(s) 37, 289
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 200
BsoBI CYCGRG 2 cut(s) 37, 289
Bsp119I TTCGAA 1 cut(s) 134
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 2 cut(s) 78, 254
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 243
BspT104I TTCGAA 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 36, 288
BssMI GATC 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 243
BstBI TTCGAA 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 54, 230
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 1 cut(s) 238
BstUI CGCG 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 348
BtsCI GGATG 1 cut(s) 219
CseI GACGC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 21
CviJI RGCY 5 cut(s) 58, 182, 193, 253, 287
CviKI_1 RGCY 5 cut(s) 58, 182, 193, 253, 287
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 2 cut(s) 54, 230
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 67
Eco88I CYCGRG 2 cut(s) 37, 289
Esp3I CGTCTC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 254
GluI GCNGC 1 cut(s) 254
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 280
HinfI GANTC 3 cut(s) 84, 115, 344
HpaII CCGG 1 cut(s) 81
HphI GGTGA 3 cut(s) 53, 59, 280
Hpy188I TCNGA 2 cut(s) 114, 178
Hpy188III TCNNGA 1 cut(s) 161
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 200, 317
HpyF3I CTNAG 2 cut(s) 54, 230
Kzo9I GATC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 83, 94, 207
LweI GCATC 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 268
MalI GATC 1 cut(s) 240
MbiI CCGCTC 1 cut(s) 256
MboI GATC 1 cut(s) 238
MboII GAAGA 4 cut(s) 260, 314, 317, 353
MfeI CAATTG 1 cut(s) 195
MluCI AATT 2 cut(s) 129, 195
MlyI GAGTC 3 cut(s) 93, 109, 338
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 5 cut(s) 39, 46, 168, 298, 360
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 1 cut(s) 14
MspI CCGG 1 cut(s) 81
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 200
MvnI CGCG 1 cut(s) 274
NdeII GATC 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 268
NspV TTCGAA 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 3 cut(s) 92, 109, 338
PpsI GAGTC 3 cut(s) 92, 109, 338
PspN4I GGNNCC 1 cut(s) 192
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 1 cut(s) 238
SchI GAGTC 3 cut(s) 93, 109, 338
SetI ASST 2 cut(s) 60, 184
SfaNI GCATC 1 cut(s) 304
SfuI TTCGAA 1 cut(s) 134
SmlI CTYRAG 3 cut(s) 159, 185, 257
SmoI CTYRAG 3 cut(s) 159, 185, 257
Sse9I AATT 2 cut(s) 129, 195
SsiI CCGC 2 cut(s) 78, 254
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 134
TasI AATT 2 cut(s) 129, 195
TatI WGTACW 1 cut(s) 20
TauI GCSGC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 111, 354
TspGWI ACGGA 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.