FvH4_5g18600

UPF0426 protein At1g28150

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014155
Physical Location & Seq
Reverse (-)
10691201 .. 10692675
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18600.t1

Sequence Viewer

Length: 372 bp
ATGTCGGTCTCACCTGTCAATATTTCTTCGTGTGCACAGCCACTGTGGAATTCAAAGAAGTTCATTAAACCCTCGGCATTCACGAAGAAGCTGAATCCCAGCAGCACAAGAGTGCGTTTGGGAAACAATCATGGGGTTAGAGCTTTTTTCTCCAATCCGATTGAAGAGCCCATTGTCAAAAAAGCGCTTCAGGAGCCGGTTGCTTTCATGGGAGGGATGTTTGCGGGACTTCTACGACTTGATTTGAATGATGATCCGCTCAAGGAGTGGGTTTCCAGGACTGTGGAAGCGTCAGGGATTACAGTGGAAGAAGTTGATGCTAACGGATCAGACCCTGAAGAAGAAACCCCGCAGCAGATTGAGATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.56

Weight (kDa)

5.06

Isoelectric Point (pI)

65.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0426 PF26369 62 - 95 7.4e-19 UPF0426 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 259
AciI CCGC 3 cut(s) 224, 257, 350
AclWI GGATC 2 cut(s) 248, 334
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 2 cut(s) 173, 357
AfeI AGCGCT 1 cut(s) 186
AgsI TTSAA 4 cut(s) 54, 164, 247, 368
AjnI CCWGG 1 cut(s) 275
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 2 cut(s) 91, 143
AluI AGCT 2 cut(s) 91, 143
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 13
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 2 cut(s) 248, 334
AlwNI CAGNNNCTG 2 cut(s) 43, 335
Aor51HI AGCGCT 1 cut(s) 186
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 102, 352
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 3
BaeGI GKGCMC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 114, 364
BciT130I CCWGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 13
BfoI RGCGCY 1 cut(s) 188
BisI GCNGC 2 cut(s) 103, 353
BlsI GCNGC 2 cut(s) 104, 354
Bme1390I CCNGG 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 196
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 2 cut(s) 114, 364
BseYI CCCAGC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 37, 171
Bsp143I GATC 2 cut(s) 253, 326
BspACI CCGC 3 cut(s) 224, 257, 350
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 2 cut(s) 248, 334
BspQI GCTCTTC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 253, 326
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 3 cut(s) 45, 283, 304
Bst6I CTCTTC 1 cut(s) 159
BstF5I GGATG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 2 cut(s) 256, 329
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 253, 326
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 114, 364
BstXI CCANNNNNNTGG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 41, 309
CaiI CAGNNNCTG 2 cut(s) 43, 335
CfoI GCGC 1 cut(s) 187
Cfr10I RCCGGY 1 cut(s) 196
CseI GACGC 1 cut(s) 279
CviAII CATG 2 cut(s) 131, 208
CviJI RGCY 5 cut(s) 40, 91, 143, 169, 196
CviKI_1 RGCY 5 cut(s) 40, 91, 143, 169, 196
DpnI GATC 2 cut(s) 255, 328
DpnII GATC 2 cut(s) 253, 326
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 13
Eco47III AGCGCT 1 cut(s) 186
Eco57I CTGAAG 2 cut(s) 173, 357
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 2 cut(s) 134, 211
FaiI YATR 2 cut(s) 132, 209
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 130, 207
FauI CCCGC 2 cut(s) 217, 357
Fnu4HI GCNGC 2 cut(s) 103, 353
FokI GGATG 1 cut(s) 229
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 103, 353
GlaI GCGC 1 cut(s) 186
GluI GCNGC 2 cut(s) 103, 353
GsaI CCCAGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 188
HapII CCGG 1 cut(s) 197
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 187
Hin1II CATG 2 cut(s) 134, 211
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 159, 331
Hpy188III TCNNGA 2 cut(s) 82, 191
Hpy8I GTNNAC 1 cut(s) 35
HpyCH4III ACNGT 3 cut(s) 45, 283, 304
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 2 cut(s) 134, 211
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 2 cut(s) 253, 326
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 8 cut(s) 27, 112, 176, 210, 262, 279, 289, 348
Lsp1109I GCAGC 2 cut(s) 114, 364
LweI GCATC 1 cut(s) 307
MalI GATC 2 cut(s) 255, 328
MbiI CCGCTC 1 cut(s) 259
MboI GATC 2 cut(s) 253, 326
MboII GAAGA 6 cut(s) 18, 97, 176, 320, 350, 353
MhlI GDGCHC 2 cut(s) 37, 171
MluCI AATT 1 cut(s) 49
MnlI CCTC 2 cut(s) 82, 206
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 2 cut(s) 253, 326
NlaIII CATG 2 cut(s) 134, 211
NlaIV GGNNCC 1 cut(s) 195
NmeAIII GCCGAG 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 275
PkrI GCNGC 2 cut(s) 104, 354
Psp6I CCWGG 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 195
PstNI CAGNNNCTG 2 cut(s) 43, 335
RseI CAYNNNNRTG 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 103, 353
Sau3AI GATC 2 cut(s) 253, 326
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 2 cut(s) 37, 171
SetI ASST 3 cut(s) 16, 93, 145
SfaNI GCATC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 49
SsiI CCGC 3 cut(s) 224, 257, 350
SspI AATATT 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 3 cut(s) 45, 283, 304
TasI AATT 1 cut(s) 49
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 48, 309
TseI GCWGC 2 cut(s) 102, 352
TspDTI ATGAA 2 cut(s) 52, 196
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 2 cut(s) 48, 309
VneI GTGCAC 1 cut(s) 33
XapI RAATTY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.