MD14G1247300.v1.1

UPF0426 protein At1g28150

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0014155
Physical Location & Seq
Reverse (-)
32466515 .. 32468752
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1247300.v1.1.491

Sequence Viewer

Length: 390 bp
ATGTCTGTGTTGCTTGTGAATTTTCCTTCGTGTGCACTCTGGAAATCAAAGAAGCTTGGCCCTGCGTTTATTAAACCATCGACATCACCGAAGGAGCTGGTTCCCATCAGAAGCAGCAGCAGCAGAAAATTGCTTTTGGGGAACTGCAGTGGGATTAAGGCGTTTTTCTTCAATCCCAGCGAAGAACCCATTCTCAGAGAAGCGCTTAAGGAGCCGGTTGCCTTCATAGGAGGGATGTTTGCTGGTCTTTTACGGCTTGATTTGAATGAAGTACCACTCAAGGATTGGGTTTCAAGGACTGTGGAAGCCTCTGGAATCACCGAGGAAGATATTGTTGCTGATGGGTTAAAATCAGAAGGAGAAGCCCCGCAACAGATTGAGATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.07

Weight (kDa)

5.31

Isoelectric Point (pI)

64.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0426 PF26369 67 - 101 7.6e-16 UPF0426 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 1 cut(s) 273
AfeI AGCGCT 1 cut(s) 204
AflII CTTAAG 1 cut(s) 206
AgsI TTSAA 4 cut(s) 172, 265, 294, 386
AluBI AGCT 2 cut(s) 55, 97
AluI AGCT 2 cut(s) 55, 97
Alw21I GWGCWC 1 cut(s) 37
Alw44I GTGCAC 1 cut(s) 33
Aor51HI AGCGCT 1 cut(s) 204
AoxI GGCC 1 cut(s) 58
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 114, 117, 120
ApoI RAATTY 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 78, 310
BaeGI GKGCMC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 126, 129, 132
BccI CCATC 3 cut(s) 85, 113, 335
BceAI ACGGC 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 145
BfoI RGCGCY 1 cut(s) 206
BfrI CTTAAG 1 cut(s) 206
BisI GCNGC 3 cut(s) 115, 118, 121
BlsI GCNGC 3 cut(s) 116, 119, 122
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 102, 213
BpuEI CTTGAG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 208
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 3 cut(s) 126, 129, 132
BseYI CCCAGC 1 cut(s) 176
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 215
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 37
BspACI CCGC 1 cut(s) 368
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 102, 213
BspMAI CTGCAG 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 301
BstAFI CTTAAG 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 120, 211
BstSFI CTRYAG 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 3 cut(s) 126, 129, 132
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 272
CspCI CAANNNNNGTGG 2 cut(s) 282, 317
CviJI RGCY 7 cut(s) 55, 60, 97, 214, 256, 308, 365
CviKI_1 RGCY 7 cut(s) 55, 60, 97, 214, 256, 308, 365
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 194
Eco47III AGCGCT 1 cut(s) 204
FaiI YATR 1 cut(s) 227
FauI CCCGC 1 cut(s) 375
Fnu4HI GCNGC 3 cut(s) 115, 118, 121
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 3 cut(s) 115, 118, 121
GlaI GCGC 1 cut(s) 204
GluI GCNGC 3 cut(s) 115, 118, 121
GsaI CCCAGC 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 215
HhaI GCGC 1 cut(s) 205
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 1 cut(s) 315
HpaII CCGG 1 cut(s) 215
HphI GGTGA 2 cut(s) 78, 310
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 3 cut(s) 110, 197, 355
Hpy188III TCNNGA 2 cut(s) 40, 312
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 4 cut(s) 36, 85, 232, 350
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 2 cut(s) 35, 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 211
HpyF3I CTNAG 1 cut(s) 194
HspAI GCGC 1 cut(s) 203
LmnI GCTCC 2 cut(s) 94, 211
LpnPI CCDG 7 cut(s) 25, 75, 83, 190, 228, 228, 297
Lsp1109I GCAGC 3 cut(s) 126, 129, 132
MboII GAAGA 3 cut(s) 160, 194, 338
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 19, 128
MnlI CCTC 3 cut(s) 224, 316, 319
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 4 cut(s) 72, 156, 207, 347
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 120, 211
NlaIV GGNNCC 2 cut(s) 102, 213
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 3 cut(s) 116, 119, 122
PspFI CCCAGC 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 102, 213
PspPI GGNCC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 149
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 4 cut(s) 72, 156, 207, 347
SatI GCNGC 3 cut(s) 115, 118, 121
Sau96I GGNCC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 37
SetI ASST 2 cut(s) 57, 99
SfcI CTRYAG 1 cut(s) 145
SmlI CTYRAG 2 cut(s) 206, 278
SmoI CTYRAG 2 cut(s) 206, 278
Sse9I AATT 2 cut(s) 19, 128
SsiI CCGC 1 cut(s) 368
TaaI ACNGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 80
TasI AATT 2 cut(s) 19, 128
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 4 cut(s) 72, 156, 207, 347
Tru9I TTAA 4 cut(s) 72, 156, 207, 347
TscAI CASTG 1 cut(s) 154
TseI GCWGC 3 cut(s) 114, 117, 120
TspDTI ATGAA 2 cut(s) 214, 282
TspRI CASTG 1 cut(s) 154
Vha464I CTTAAG 1 cut(s) 206
VneI GTGCAC 1 cut(s) 33
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.