Rorug06G0401700

UPF0426 protein At1g28150

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
54653078 .. 54653545
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0401700.1

Sequence Viewer

Length: 468 bp
ATGGAAATGCATGTGGTTGTCGCTCTTTCACCTGTTATTATGGATGAGGATGTGACTATTCAGGAGTTGGCTTCTCTGTCAGGGAAGAAACGGAAGGCATTGAATGAATCTGCTAGAACCGGGAAGCGATTCTTGGCTCTTCCAGAACCGGGACTCTCAATTGAGGATGGATTAACTTTGGCTCTGAAACATAAGCATGGTCATCTTCTGATATCTCCCAAGAAGAAGAAGATGGGAAGACCGAATGGCAGTAAGAATAAGTCCAAGCTAGCTCGGGATATGACTCTTGATGTGAAACCCAAACGTCCGAAAAAATGGAAGACTCATAGTCAGGCTTCTGAGACTGCAGATGCCAATATCATTGAGGTGGTAGGGGTGCAAGTTGAGGAGGCTAGTCCTATTGTGGCCTCGGTTTCAGTTGAAGGGGGAGTGGGCGAGGACTCGCCTACTTCATTTGTTTCTATTTAA
Functional Annotation

Protein Analysis

155

Amino Acids

16.71

Weight (kDa)

9.45

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 103, 422
AhdI GACNNNNNGTC 1 cut(s) 327
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 2 cut(s) 268, 272
AluI AGCT 2 cut(s) 268, 272
Alw26I GTCTC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 128
AsuC2I CCSGG 2 cut(s) 121, 150
AsuHPI GGTGA 1 cut(s) 21
AsuNHI GCTAGC 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 244, 326
BccI CCATC 2 cut(s) 161, 226
BcnI CCSGG 2 cut(s) 121, 150
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 3 cut(s) 114, 269, 393
BfmI CTRYAG 1 cut(s) 345
Bme1390I CCNGG 2 cut(s) 121, 150
BmeRI GACNNNNNGTC 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 273
BmrFI CCNGG 2 cut(s) 121, 150
BmsI GCATC 1 cut(s) 340
BmtI GCTAGC 1 cut(s) 272
BpiI GAAGAC 2 cut(s) 244, 326
BpuMI CCSGG 2 cut(s) 121, 150
BsaJI CCNNGG 1 cut(s) 408
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 3 cut(s) 49, 55, 172
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 401
BshFI GGCC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 2 cut(s) 120, 149
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 165
BsnI GGCC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 273
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 349
BspOI GCTAGC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 408
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 3 cut(s) 49, 55, 172
BstMAI GTCTC 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 119, 148
BstSFI CTRYAG 1 cut(s) 345
BstV2I GAAGAC 2 cut(s) 244, 326
BsuRI GGCC 1 cut(s) 407
BtsCI GGATG 3 cut(s) 49, 55, 172
Cac8I GCNNGC 1 cut(s) 270
CviAII CATG 2 cut(s) 11, 197
CviJI RGCY 8 cut(s) 71, 137, 182, 268, 272, 335, 392, 407
CviKI_1 RGCY 8 cut(s) 71, 137, 182, 268, 272, 335, 392, 407
DdeI CTNAG 1 cut(s) 339
DriI GACNNNNNGTC 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 144
Eco32I GATATC 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 273
EcoRV GATATC 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 12
FaeI CATG 2 cut(s) 14, 200
FaiI YATR 6 cut(s) 12, 41, 192, 198, 281, 327
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 1 cut(s) 165
FatI CATG 2 cut(s) 10, 196
FokI GGATG 3 cut(s) 56, 62, 179
FspBI CTAG 3 cut(s) 114, 269, 393
HaeIII GGCC 1 cut(s) 407
HapII CCGG 2 cut(s) 120, 149
Hin1II CATG 2 cut(s) 14, 200
HinfI GANTC 6 cut(s) 107, 129, 153, 283, 322, 440
HpaII CCGG 2 cut(s) 120, 149
HphI GGTGA 1 cut(s) 21
Hpy188I TCNGA 4 cut(s) 186, 210, 309, 340
Hpy188III TCNNGA 4 cut(s) 62, 143, 275, 287
HpyAV CCTTC 2 cut(s) 88, 416
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 10, 347, 379
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 2 cut(s) 14, 200
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 7 cut(s) 45, 47, 66, 133, 156, 162, 317
LweI GCATC 1 cut(s) 340
MaeI CTAG 3 cut(s) 114, 269, 393
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 52
MboII GAAGA 8 cut(s) 97, 131, 197, 235, 238, 241, 249, 331
MfeI CAATTG 1 cut(s) 159
MluCI AATT 1 cut(s) 159
MlyI GAGTC 4 cut(s) 147, 277, 316, 434
MnlI CCTC 7 cut(s) 40, 157, 358, 379, 382, 418, 430
Mph1103I ATGCAT 1 cut(s) 12
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 2 cut(s) 173, 466
MslI CAYNNNNRTG 2 cut(s) 195, 365
MspI CCGG 2 cut(s) 120, 149
MspR9I CCNGG 2 cut(s) 121, 150
MunI CAATTG 1 cut(s) 159
NciI CCSGG 2 cut(s) 121, 150
NheI GCTAGC 1 cut(s) 268
NlaIII CATG 2 cut(s) 14, 200
NmuCI GTSAC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 12
NspI RCATGY 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 107, 129
PleI GAGTC 4 cut(s) 147, 277, 316, 434
PpsI GAGTC 4 cut(s) 147, 277, 316, 434
PstI CTGCAG 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 195, 365
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 2 cut(s) 173, 466
SchI GAGTC 4 cut(s) 147, 277, 316, 434
ScrFI CCNGG 2 cut(s) 121, 150
SetI ASST 5 cut(s) 34, 270, 274, 307, 369
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 195, 365
Sse9I AATT 1 cut(s) 159
SspMI CTAG 3 cut(s) 114, 269, 393
StyD4I CCNGG 2 cut(s) 119, 148
TaiI ACGT 1 cut(s) 307
TaqII GACCGA 1 cut(s) 256
TasI AATT 1 cut(s) 159
TfiI GAWTC 2 cut(s) 107, 129
Tru1I TTAA 2 cut(s) 173, 466
Tru9I TTAA 2 cut(s) 173, 466
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 120, 441
TspGWI ACGGA 1 cut(s) 106
XceI RCATGY 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 3 cut(s) 114, 269, 393
Zsp2I ATGCAT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.