Rw7G000090

UPF0426 protein At1g28150

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014155
Physical Location & Seq
Forward (+)
151242 .. 152243
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000090.1

Sequence Viewer

Length: 375 bp
ATGTCAGTCTCACTTGTCAATGTTTCTTCGTGTGCACAGCCACTGGTGTTGGAAATCAAAGAAACTCATAAAACCCTCGGCATTAACAAAGAAGCTGAATCCCAGCAGCACAAGAGTGCGTTTGGGAAACAATCACGGGTTAAAGCGTTTTTCTCCAATCCTATTGAAGAGCCCATTGTCAGAAAAGCGCTTCAGGAACCAGTTGCTTTCATGGGAGGGATGTTTGCAGGCCTTCTACGACTTGATTTGAATGATGATCCACTCAAGGAGTGGGTTTCAAGGACTGTGGAAGCCTCAGGAATTACAGAGGAAGAAGTTGATGCTGAAGGATTAAACCCTGAAGAAGAAACCCCGCAACAGATTGAGATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.74

Weight (kDa)

4.67

Isoelectric Point (pI)

74.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0426 PF26369 63 - 96 7.5e-19 UPF0426 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 353
AclWI GGATC 1 cut(s) 251
AcuI CTGAAG 3 cut(s) 176, 345, 360
AfeI AGCGCT 1 cut(s) 189
AgsI TTSAA 4 cut(s) 167, 250, 279, 371
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 13
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 1 cut(s) 251
AlwNI CAGNNNCTG 1 cut(s) 43
Aor51HI AGCGCT 1 cut(s) 189
AoxI GGCC 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 190
AxyI CCTNAGG 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 13
BfoI RGCGCY 1 cut(s) 191
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 76
Bse1I ACTGG 2 cut(s) 48, 200
Bse21I CCTNAGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 48, 200
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 102
BshFI GGCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 37, 174
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 353
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 1 cut(s) 251
BspQI GCTCTTC 1 cut(s) 162
BsrI ACTGG 2 cut(s) 48, 200
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 295
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 190
CspCI CAANNNNNGTGG 4 cut(s) 30, 65, 267, 302
CviAII CATG 1 cut(s) 211
CviJI RGCY 5 cut(s) 40, 95, 172, 231, 293
CviKI_1 RGCY 5 cut(s) 40, 95, 172, 231, 293
DdeI CTNAG 1 cut(s) 295
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco147I AGGCCT 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 174
Eco47III AGCGCT 1 cut(s) 189
Eco57I CTGAAG 3 cut(s) 176, 345, 360
Eco81I CCTNAGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 1 cut(s) 214
FaiI YATR 2 cut(s) 69, 212
FatI CATG 1 cut(s) 210
FauI CCCGC 1 cut(s) 360
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 232
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 107
GlaI GCGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 107
GsaI CCCAGC 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 1 cut(s) 231
HhaI GCGC 1 cut(s) 190
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 2 cut(s) 194, 297
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 242, 320
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 2 cut(s) 35, 227
HpyF3I CTNAG 1 cut(s) 295
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 256
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 7 cut(s) 29, 116, 179, 213, 213, 282, 351
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 310
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 5 cut(s) 18, 179, 323, 353, 356
MhlI GDGCHC 2 cut(s) 37, 174
MluCI AATT 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 4 cut(s) 86, 209, 301, 304
MseI TTAA 3 cut(s) 84, 141, 332
MslI CAYNNNNRTG 1 cut(s) 114
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 198
NmeAIII GCCGAG 1 cut(s) 57
OliI CACNNNNGTG 1 cut(s) 114
PceI AGGCCT 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 84, 141, 332
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 1 cut(s) 256
SduI GDGCHC 2 cut(s) 37, 174
SetI ASST 1 cut(s) 97
SfaNI GCATC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 300
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 1 cut(s) 353
StuI AGGCCT 1 cut(s) 231
TaaI ACNGT 1 cut(s) 286
TasI AATT 1 cut(s) 300
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 3 cut(s) 84, 141, 332
Tru9I TTAA 3 cut(s) 84, 141, 332
TscAI CASTG 1 cut(s) 48
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 199
TspRI CASTG 1 cut(s) 48
VneI GTGCAC 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.