MD06G1241100.v1.1

UPF0426 protein At1g28150

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014155
Physical Location & Seq
Forward (+)
37061075 .. 37062929
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1241100.v1.1.491

Sequence Viewer

Length: 423 bp
ATGTCTGTGTTTATTGTGAATTCTCCTTCGTGTGCACTGTGGAAATCGAAGAAGCCTGGCCCTGGGTTTATTAAACCACCGACATCACCGAAGCAGCAGGTTCCCAGAAGCAGCAGCCGCAGAAAATTGCGTTTGGGGAACGGCAATGGGATTAAGGCGTTTTTCTTCAATCCCAACGAAGAACCCATCCTCAGAGAAGCGCTTAAGAGGTTAGATTTTTGCCAACTGATTCTTGCATTTTTCGAGCCAGTTGCCTTCATGGGAGGGATGTTCGCTGGTCTTTTACGGCTTGATTTGAATGAAGATCCACTCAAGGATTGGGTTTCAAGGACTGTGGAAGCCACTGGAATCACCGAGGAAGAAATTGTTGCTGACGGGTTAAAACCAGCAGGAGAATCCCCGCTACAGATTGAGATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.53

Weight (kDa)

7.74

Isoelectric Point (pI)

68.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0426 PF26369 82 - 112 3.5e-17 UPF0426 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
AciI CCGC 2 cut(s) 118, 401
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 19
AfeI AGCGCT 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 62
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 4 cut(s) 169, 298, 327, 419
AjnI CCWGG 2 cut(s) 55, 61
Alw21I GWGCWC 1 cut(s) 37
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 1 cut(s) 299
Aor51HI AGCGCT 1 cut(s) 201
AoxI GGCC 1 cut(s) 58
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 94, 111, 114
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 78, 343
BaeGI GKGCMC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 106, 123, 126
BccI CCATC 1 cut(s) 194
BceAI ACGGC 2 cut(s) 157, 302
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 2 cut(s) 57, 63
BfmI CTRYAG 1 cut(s) 404
BfoI RGCGCY 1 cut(s) 203
BfrI CTTAAG 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 4 cut(s) 95, 112, 115, 118
BlsI GCNGC 4 cut(s) 96, 113, 116, 119
Bme1390I CCNGG 2 cut(s) 57, 63
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 2 cut(s) 57, 63
BpuEI CTTGAG 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 61, 62, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 248, 349
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 2 cut(s) 57, 63
BseDI CCNNGG 3 cut(s) 61, 62, 354
BseGI GGATG 2 cut(s) 186, 273
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 248, 349
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 3 cut(s) 106, 123, 126
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 62
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 2 cut(s) 118, 401
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 1 cut(s) 299
BspTI CTTAAG 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 2 cut(s) 248, 349
BssECI CCNNGG 3 cut(s) 61, 62, 354
BssMI GATC 1 cut(s) 304
Bst2UI CCWGG 2 cut(s) 57, 63
Bst4CI ACNGT 2 cut(s) 39, 334
BstAFI CTTAAG 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 2 cut(s) 186, 273
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 2 cut(s) 57, 63
BstSCI CCNGG 2 cut(s) 55, 61
BstSFI CTRYAG 1 cut(s) 404
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 3 cut(s) 106, 123, 126
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 2 cut(s) 186, 273
BtsIMutI CAGTG 2 cut(s) 35, 342
BveI ACCTGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 59
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 1 cut(s) 259
CviJI RGCY 6 cut(s) 55, 60, 117, 247, 289, 341
CviKI_1 RGCY 6 cut(s) 55, 60, 117, 247, 289, 341
DdeI CTNAG 1 cut(s) 191
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco47III AGCGCT 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 55, 61
FaeI CATG 1 cut(s) 262
FaiI YATR 1 cut(s) 260
FatI CATG 1 cut(s) 258
FauI CCCGC 1 cut(s) 408
Fnu4HI GCNGC 4 cut(s) 95, 112, 115, 118
FokI GGATG 2 cut(s) 173, 280
Fsp4HI GCNGC 4 cut(s) 95, 112, 115, 118
GlaI GCGC 1 cut(s) 201
GluI GCNGC 4 cut(s) 95, 112, 115, 118
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 1 cut(s) 60
HhaI GCGC 1 cut(s) 202
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 3 cut(s) 229, 348, 395
HphI GGTGA 2 cut(s) 78, 343
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 36, 265
HpyCH4III ACNGT 2 cut(s) 39, 334
HpyCH4V TGCA 2 cut(s) 35, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 1 cut(s) 304
Lsp1109I GCAGC 3 cut(s) 106, 123, 126
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 5 cut(s) 61, 157, 191, 314, 371
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 3 cut(s) 19, 125, 363
MnlI CCTC 4 cut(s) 200, 201, 257, 349
MseI TTAA 4 cut(s) 72, 153, 204, 380
MspCI CTTAAG 1 cut(s) 203
MspR9I CCNGG 2 cut(s) 57, 63
MvaI CCWGG 2 cut(s) 57, 63
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 102
PasI CCCWGGG 1 cut(s) 62
PfeI GAWTC 3 cut(s) 229, 348, 395
PkrI GCNGC 4 cut(s) 96, 113, 116, 119
Psp6I CCWGG 2 cut(s) 55, 61
PspGI CCWGG 2 cut(s) 55, 61
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 304
SaqAI TTAA 4 cut(s) 72, 153, 204, 380
SatI GCNGC 4 cut(s) 95, 112, 115, 118
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 57, 63
SduI GDGCHC 1 cut(s) 37
SetI ASST 2 cut(s) 102, 212
SfcI CTRYAG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 203, 311
SmoI CTYRAG 2 cut(s) 203, 311
Sse9I AATT 3 cut(s) 19, 125, 363
SsiI CCGC 2 cut(s) 118, 401
StyD4I CCNGG 2 cut(s) 55, 61
TaaI ACNGT 2 cut(s) 39, 334
TaqI TCGA 2 cut(s) 47, 243
TasI AATT 3 cut(s) 19, 125, 363
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 3 cut(s) 229, 348, 395
Tru1I TTAA 4 cut(s) 72, 153, 204, 380
Tru9I TTAA 4 cut(s) 72, 153, 204, 380
TscAI CASTG 2 cut(s) 42, 349
TseI GCWGC 3 cut(s) 94, 111, 114
TspDTI ATGAA 2 cut(s) 247, 315
TspRI CASTG 2 cut(s) 42, 349
Vha464I CTTAAG 1 cut(s) 203
VneI GTGCAC 1 cut(s) 33
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.