Rh7CG001000

UPF0426 protein At1g28150

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014155
Physical Location & Seq
Forward (+)
146964 .. 148232
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG001000.1

Sequence Viewer

Length: 429 bp
ATGGTTATAAATCTACATGTCGGGAACCGGAACCAGAAGCAGCAGAGGAAGCTCAATATGTCAGTCTCACTTGTCAATGTTTCTTCGTGTGCACAGCCACTGTGGAAATCAAAGAAGCTCATAAAACCCTCGGCATTAACAAAGAAGCTGAATCCCAGCAGCACAAGAGTGCGTTTGGGAAACAATCACGGGGTTAAAGCGTTTTTCTCCAATCCTATTGAAGAGCCCATTGTCAGAAAAGCGCTTCAGGAACCAGTTGCTTTCATGGGAGGGATGTTTGCAGGCCTTCTACGACTTGATTTGAATGATGATCCACTCAAGGAGTGGGTTTCAAGGACTGTGGAAGCCTCAGGGATTACAGAGGAAGAAGTTGATGCTGAAGGATTAAACCCTGAAGAAGAAACCCCGCAACAGATTGAGATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.85

Weight (kDa)

6.75

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0426 PF26369 81 - 114 9.6e-19 UPF0426 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AciI CCGC 1 cut(s) 407
AclWI GGATC 1 cut(s) 305
AcuI CTGAAG 3 cut(s) 230, 399, 414
AfeI AGCGCT 1 cut(s) 243
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 4 cut(s) 221, 304, 333, 425
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 3 cut(s) 52, 118, 148
AluI AGCT 3 cut(s) 52, 118, 148
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 70
Alw44I GTGCAC 1 cut(s) 90
AlwI GGATC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 100
Aor51HI AGCGCT 1 cut(s) 243
AoxI GGCC 1 cut(s) 283
ApaLI GTGCAC 1 cut(s) 90
ApeKI GCWGC 2 cut(s) 40, 159
AspLEI GCGC 1 cut(s) 244
AxyI CCTNAGG 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 2 cut(s) 52, 171
BcoDI GTCTC 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 245
BisI GCNGC 2 cut(s) 41, 160
BlsI GCNGC 2 cut(s) 42, 161
BmiI GGNNCC 3 cut(s) 26, 32, 252
BmsI GCATC 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 254
Bse21I CCTNAGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 94
BseXI GCAGC 2 cut(s) 52, 171
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 70
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 94, 228
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 1 cut(s) 407
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 362
BspLI GGNNCC 3 cut(s) 26, 32, 252
BspPI GGATC 1 cut(s) 305
BspQI GCTCTTC 1 cut(s) 216
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 102, 340
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 52, 171
Bsu36I CCTNAGG 1 cut(s) 349
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 283
CaiI CAGNNNCTG 1 cut(s) 100
CfoI GCGC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CviAII CATG 2 cut(s) 17, 265
CviJI RGCY 7 cut(s) 52, 97, 118, 148, 226, 285, 347
CviKI_1 RGCY 7 cut(s) 52, 97, 118, 148, 226, 285, 347
DdeI CTNAG 1 cut(s) 349
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco147I AGGCCT 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 228
Eco47III AGCGCT 1 cut(s) 243
Eco57I CTGAAG 3 cut(s) 230, 399, 414
Eco81I CCTNAGG 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 2 cut(s) 20, 268
FaiI YATR 5 cut(s) 8, 18, 59, 122, 266
FatI CATG 2 cut(s) 16, 264
FauI CCCGC 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 41, 160
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 41, 160
GlaI GCGC 1 cut(s) 243
GluI GCNGC 2 cut(s) 41, 160
GsaI CCCAGC 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 1 cut(s) 285
HapII CCGG 1 cut(s) 28
HhaI GCGC 1 cut(s) 244
Hin1II CATG 2 cut(s) 20, 268
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 1 cut(s) 151
HpaII CCGG 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 2 cut(s) 22, 248
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 296, 374
HpyCH4III ACNGT 2 cut(s) 102, 340
HpyCH4V TGCA 2 cut(s) 92, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 349
Hsp92II CATG 2 cut(s) 20, 268
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 310
LguI GCTCTTC 1 cut(s) 216
LpnPI CCDG 8 cut(s) 41, 47, 169, 233, 267, 267, 336, 405
Lsp1109I GCAGC 2 cut(s) 52, 171
LweI GCATC 1 cut(s) 364
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 5 cut(s) 75, 233, 377, 407, 410
MhlI GDGCHC 2 cut(s) 94, 228
MnlI CCTC 5 cut(s) 39, 139, 263, 355, 358
MseI TTAA 3 cut(s) 137, 195, 386
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 1 cut(s) 310
NlaIII CATG 2 cut(s) 20, 268
NlaIV GGNNCC 3 cut(s) 26, 32, 252
NmeAIII GCCGAG 1 cut(s) 110
NspI RCATGY 1 cut(s) 20
OliI CACNNNNGTG 1 cut(s) 167
PceI AGGCCT 1 cut(s) 285
PciI ACATGT 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 42, 161
PscI ACATGT 1 cut(s) 16
PsiI TTATAA 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 155
PspN4I GGNNCC 3 cut(s) 26, 32, 252
PstNI CAGNNNCTG 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 137, 195, 386
SatI GCNGC 2 cut(s) 41, 160
Sau3AI GATC 1 cut(s) 310
SduI GDGCHC 2 cut(s) 94, 228
SetI ASST 3 cut(s) 54, 120, 150
SfaNI GCATC 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 1 cut(s) 407
StuI AGGCCT 1 cut(s) 285
TaaI ACNGT 2 cut(s) 102, 340
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 3 cut(s) 137, 195, 386
Tru9I TTAA 3 cut(s) 137, 195, 386
TscAI CASTG 1 cut(s) 105
TseI GCWGC 2 cut(s) 40, 159
TspDTI ATGAA 1 cut(s) 253
TspRI CASTG 1 cut(s) 105
VneI GTGCAC 1 cut(s) 90
XceI RCATGY 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.