Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005310.1

Orthogroup ID

OG0014155

Physical Location & Seq

Genomic Coordinates Reverse (-)

231107 .. 232179

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005310.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggttataaatctacatgtcgggaaccggaaccagaagcagcagaggaagctcaatatgtcagtctcacttgtcaatgtttcttcgtgtgcacagccactgtggaaatcaaagaagctcataaaaccctcggcattaacaaagaagctgaatcccagcagcacaagagtgcgtttgggaaacaatcacggggttaaagcgtttttctccaatcctattgaagagcccattgtcagaaaagcgcttcaggaaccagttgctttcatgggagggatgtttgcaggccttctacgacttgatttgaatgatgatccactcaaggagtgggtttcaaggactgtggaagcctcagggattacagaggaagaagttgatgctgaaggattaaaccctgaagaagaaaccccgcaacagattgagattgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.85

Weight (kDa)

6.75

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28150 AT1G28150
fragaria_vesca	FvH4_5g18600
malus_domestica	MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica	Prupe.5G245400_v2.0.a1
pyrus_communis	pycom06g21620
rosa_chinensis	RchiOBHm_Chr7g0176901
rosa_laevigata	RLG00000005574
rosa_multiflora	Rmu_sc0005310.1_g000045
rosa_roxburghii	Rroxscaffold_3G00276300
rosa_rugosa	Rorug06G0401700
rosa_samantha	Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana	Rw7G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	8
AciI	CCGC	1 cut(s)	407
AclWI	GGATC	1 cut(s)	305
AcuI	CTGAAG	3 cut(s)	230, 399, 414
AfeI	AGCGCT	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	221, 304, 333, 425
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	3 cut(s)	52, 118, 148
AluI	AGCT	3 cut(s)	52, 118, 148
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	305
AlwNI	CAGNNNCTG	1 cut(s)	100
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	1 cut(s)	283
ApaLI	GTGCAC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	40, 159
AspLEI	GCGC	1 cut(s)	244
AxyI	CCTNAGG	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	52, 171
BcoDI	GTCTC	1 cut(s)	70
BfoI	RGCGCY	1 cut(s)	245
BisI	GCNGC	2 cut(s)	41, 160
BlsI	GCNGC	2 cut(s)	42, 161
BmiI	GGNNCC	3 cut(s)	26, 32, 252
BmsI	GCATC	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	254
Bse21I	CCTNAGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	52, 171
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	94, 228
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	362
BspLI	GGNNCC	3 cut(s)	26, 32, 252
BspPI	GGATC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	310
Bst4CI	ACNGT	2 cut(s)	102, 340
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	52, 171
Bsu36I	CCTNAGG	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	100
CfoI	GCGC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	2 cut(s)	17, 265
CviJI	RGCY	7 cut(s)	52, 97, 118, 148, 226, 285, 347
CviKI_1	RGCY	7 cut(s)	52, 97, 118, 148, 226, 285, 347
DdeI	CTNAG	1 cut(s)	349
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	228
Eco47III	AGCGCT	1 cut(s)	243
Eco57I	CTGAAG	3 cut(s)	230, 399, 414
Eco81I	CCTNAGG	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	2 cut(s)	20, 268
FaiI	YATR	5 cut(s)	8, 18, 59, 122, 266
FatI	CATG	2 cut(s)	16, 264
FauI	CCCGC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	41, 160
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	41, 160
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	41, 160
GsaI	CCCAGC	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	1 cut(s)	28
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	20, 268
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	2 cut(s)	22, 248
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	296, 374
HpyCH4III	ACNGT	2 cut(s)	102, 340
HpyCH4V	TGCA	2 cut(s)	92, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	20, 268
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	310
LguI	GCTCTTC	1 cut(s)	216
LpnPI	CCDG	8 cut(s)	41, 47, 169, 233, 267, 267, 336, 405
Lsp1109I	GCAGC	2 cut(s)	52, 171
LweI	GCATC	1 cut(s)	364
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	5 cut(s)	75, 233, 377, 407, 410
MhlI	GDGCHC	2 cut(s)	94, 228
MnlI	CCTC	5 cut(s)	39, 139, 263, 355, 358
MseI	TTAA	3 cut(s)	137, 195, 386
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	20, 268
NlaIV	GGNNCC	3 cut(s)	26, 32, 252
NmeAIII	GCCGAG	1 cut(s)	110
NspI	RCATGY	1 cut(s)	20
OliI	CACNNNNGTG	1 cut(s)	167
PceI	AGGCCT	1 cut(s)	285
PciI	ACATGT	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	42, 161
PscI	ACATGT	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	155
PspN4I	GGNNCC	3 cut(s)	26, 32, 252
PstNI	CAGNNNCTG	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	137, 195, 386
SatI	GCNGC	2 cut(s)	41, 160
Sau3AI	GATC	1 cut(s)	310
SduI	GDGCHC	2 cut(s)	94, 228
SetI	ASST	3 cut(s)	54, 120, 150
SfaNI	GCATC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	407
StuI	AGGCCT	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	102, 340
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	3 cut(s)	137, 195, 386
Tru9I	TTAA	3 cut(s)	137, 195, 386
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	2 cut(s)	40, 159
TspDTI	ATGAA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	90
XceI	RCATGY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.