Rh7BG001600

UPF0426 protein At1g28150

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014155
Physical Location & Seq
Forward (+)
125507 .. 127445
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG001600.1

Sequence Viewer

Length: 459 bp
ATGGTTATGGTTATAAATCTACATGTCGGGAACCGGAACCAGAAGCAGAAGAAGCAGCAGAGGGGAAGGCAGCAGAGGAAGCTCAATATGTCAGTCTCACTTGTCAATGTTTCTTCGTGTGCACAGCCACTGTGGAAATCAAAGAAGCTCATAAAACCCTCGGCATTAACAAAGAAGCTGATTCCCAGCAGCACAAGAGTGCGTTTGGGAAACAATCACGGGGTTAAAGCGTTTTTCTCCAATCCTATTGAAGAGCCCATTGTCAGAAAAGCGCTTCAGGAACCAGTTGCTTTCATGGGAGGGATGTTTGCAGGCCTTCTACGACTTGATTTGAATGATGATCCACTCAAGGAGTGGGTTTCAAGGACTGTGGAAGCCTCAGGGATTACAGAGGAAGAAGTTGATGCTGAAGGATTAAACCCTGAAGAAGAAACCCCGCAACAGATTGAGATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.09

Weight (kDa)

9.33

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0426 PF26369 91 - 124 1.1e-18 UPF0426 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 14
AciI CCGC 1 cut(s) 437
AclWI GGATC 1 cut(s) 335
AcuI CTGAAG 3 cut(s) 260, 429, 444
AfeI AGCGCT 1 cut(s) 273
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 4 cut(s) 251, 334, 363, 455
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 3 cut(s) 82, 148, 178
AluI AGCT 3 cut(s) 82, 148, 178
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 100
Alw44I GTGCAC 1 cut(s) 120
AlwI GGATC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 130
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 3 cut(s) 55, 70, 189
AspLEI GCGC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 379
BaeGI GKGCMC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 3 cut(s) 67, 82, 201
BcoDI GTCTC 1 cut(s) 100
BfoI RGCGCY 1 cut(s) 275
BisI GCNGC 3 cut(s) 56, 71, 190
BlsI GCNGC 3 cut(s) 57, 72, 191
BmiI GGNNCC 3 cut(s) 32, 38, 282
BmsI GCATC 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 159
BsaWI WCCGGW 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 284
Bse21I CCTNAGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 3 cut(s) 67, 82, 201
BseYI CCCAGC 1 cut(s) 185
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 100
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 124, 258
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 1 cut(s) 437
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 392
BspLI GGNNCC 3 cut(s) 32, 38, 282
BspPI GGATC 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 340
Bst4CI ACNGT 2 cut(s) 132, 370
Bst6I CTCTTC 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 379
BstF5I GGATG 1 cut(s) 309
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 52, 79
BstNSI RCATGY 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 124
BstV1I GCAGC 3 cut(s) 67, 82, 201
Bsu36I CCTNAGG 1 cut(s) 379
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 130
CfoI GCGC 1 cut(s) 274
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 2 cut(s) 23, 295
CviJI RGCY 7 cut(s) 82, 127, 148, 178, 256, 315, 377
CviKI_1 RGCY 7 cut(s) 82, 127, 148, 178, 256, 315, 377
DdeI CTNAG 1 cut(s) 379
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 258
Eco47III AGCGCT 1 cut(s) 273
Eco57I CTGAAG 3 cut(s) 260, 429, 444
Eco81I CCTNAGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 2 cut(s) 26, 298
FaiI YATR 6 cut(s) 8, 14, 24, 89, 152, 296
FatI CATG 2 cut(s) 22, 294
FauI CCCGC 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 56, 71, 190
FokI GGATG 1 cut(s) 316
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 56, 71, 190
GlaI GCGC 1 cut(s) 273
GluI GCNGC 3 cut(s) 56, 71, 190
GsaI CCCAGC 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 274
Hin1II CATG 2 cut(s) 26, 298
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HinfI GANTC 1 cut(s) 181
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 2 cut(s) 28, 278
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 60, 326, 404
HpyCH4III ACNGT 2 cut(s) 132, 370
HpyCH4V TGCA 2 cut(s) 122, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 79
HpyF3I CTNAG 1 cut(s) 379
Hsp92II CATG 2 cut(s) 26, 298
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 1 cut(s) 340
LguI GCTCTTC 1 cut(s) 246
LpnPI CCDG 8 cut(s) 47, 53, 199, 263, 297, 297, 366, 435
Lsp1109I GCAGC 3 cut(s) 67, 82, 201
LweI GCATC 1 cut(s) 394
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 6 cut(s) 61, 105, 263, 407, 437, 440
MhlI GDGCHC 2 cut(s) 124, 258
MnlI CCTC 6 cut(s) 54, 69, 169, 293, 385, 388
MseI TTAA 3 cut(s) 167, 225, 416
MslI CAYNNNNRTG 1 cut(s) 197
MspI CCGG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 52, 79
NdeII GATC 1 cut(s) 340
NlaIII CATG 2 cut(s) 26, 298
NlaIV GGNNCC 3 cut(s) 32, 38, 282
NmeAIII GCCGAG 1 cut(s) 140
NspI RCATGY 1 cut(s) 26
OliI CACNNNNGTG 1 cut(s) 197
PceI AGGCCT 1 cut(s) 315
PciI ACATGT 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 3 cut(s) 57, 72, 191
PscI ACATGT 1 cut(s) 22
PsiI TTATAA 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 185
PspN4I GGNNCC 3 cut(s) 32, 38, 282
PstNI CAGNNNCTG 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 167, 225, 416
SatI GCNGC 3 cut(s) 56, 71, 190
Sau3AI GATC 1 cut(s) 340
SduI GDGCHC 2 cut(s) 124, 258
SetI ASST 3 cut(s) 84, 150, 180
SfaNI GCATC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 1 cut(s) 437
StuI AGGCCT 1 cut(s) 315
TaaI ACNGT 2 cut(s) 132, 370
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 3 cut(s) 167, 225, 416
Tru9I TTAA 3 cut(s) 167, 225, 416
TscAI CASTG 1 cut(s) 135
TseI GCWGC 3 cut(s) 55, 70, 189
TspDTI ATGAA 1 cut(s) 283
TspRI CASTG 1 cut(s) 135
VneI GTGCAC 1 cut(s) 120
XceI RCATGY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.