RLG00000005574

UPF0426 protein At1g28150

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014155
Physical Location & Seq
Reverse (-)
68627798 .. 68628879
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005574

Sequence Viewer

Length: 453 bp
ATGGTTATAAATCTACATGTCGGGAACCGGAACCAGAAGCAGAAGAAGCAGCAGAGGGGAAGGCAGCAGAGGAAGCTCAATATGTCAGTCTCACTTGTCAATGTTTCTTCGTATGCACAGCCACTGTGGAAATCAAAGAAGCTCATAAAACCCTCGGCATTAACAAAGAAGCTGAATCCCAGCAGCACAAGAGTGCGTTTGGTAAACAATCACGGGGTTAAAGCGTTTTTCTCCAATCCGATTGAGGAGCCCATTGTCAGAAAAGCGCTTCAGGAACCAGTTGCTTTCATGGGAGGGATGTTTGCAGGCCTTCTACGACTTGATTTGAATGATGATCCACTCAAGGAGTGGGTTTCAAGGACTGTGGAAGCCTCAGGGATTACAGAGGAAGAAGTTGATGCTGAAGGATTAAACCCTGAAGAAGAAACCCCGCAACAGATTGAGATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.96

Weight (kDa)

9.43

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0426 PF26369 89 - 122 1.1e-18 UPF0426 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AciI CCGC 1 cut(s) 431
AclWI GGATC 1 cut(s) 329
AcuI CTGAAG 3 cut(s) 254, 423, 438
AfeI AGCGCT 1 cut(s) 267
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 3 cut(s) 328, 357, 449
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 3 cut(s) 76, 142, 172
AluI AGCT 3 cut(s) 76, 142, 172
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 124
Aor51HI AGCGCT 1 cut(s) 267
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 3 cut(s) 49, 64, 183
AspLEI GCGC 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 373
BanII GRGCYC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 61, 76, 195
BcoDI GTCTC 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 3 cut(s) 50, 65, 184
BlsI GCNGC 3 cut(s) 51, 66, 185
BmiI GGNNCC 4 cut(s) 26, 32, 249, 276
BmsI GCATC 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 278
Bse21I CCTNAGG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 3 cut(s) 61, 76, 195
BseYI CCCAGC 1 cut(s) 179
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 1 cut(s) 431
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 386
BspLI GGNNCC 4 cut(s) 26, 32, 249, 276
BspPI GGATC 1 cut(s) 329
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 126, 364
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 46, 73
BstNSI RCATGY 1 cut(s) 20
BstV1I GCAGC 3 cut(s) 61, 76, 195
Bsu36I CCTNAGG 1 cut(s) 373
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 307
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 268
CspCI CAANNNNNGTGG 2 cut(s) 345, 380
CviAII CATG 2 cut(s) 17, 289
CviJI RGCY 7 cut(s) 76, 121, 142, 172, 250, 309, 371
CviKI_1 RGCY 7 cut(s) 76, 121, 142, 172, 250, 309, 371
DdeI CTNAG 1 cut(s) 373
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 252
Eco47III AGCGCT 1 cut(s) 267
Eco57I CTGAAG 3 cut(s) 254, 423, 438
Eco81I CCTNAGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 2 cut(s) 20, 292
FaiI YATR 6 cut(s) 8, 18, 83, 114, 146, 290
FatI CATG 2 cut(s) 16, 288
FauI CCCGC 1 cut(s) 438
Fnu4HI GCNGC 3 cut(s) 50, 65, 184
FokI GGATG 1 cut(s) 310
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 3 cut(s) 50, 65, 184
GlaI GCGC 1 cut(s) 267
GluI GCNGC 3 cut(s) 50, 65, 184
GsaI CCCAGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 28
HhaI GCGC 1 cut(s) 268
Hin1II CATG 2 cut(s) 20, 292
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 240, 260
Hpy188III TCNNGA 2 cut(s) 22, 272
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 3 cut(s) 54, 320, 398
HpyCH4III ACNGT 2 cut(s) 126, 364
HpyCH4V TGCA 2 cut(s) 116, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 73
HpyF3I CTNAG 1 cut(s) 373
Hsp92II CATG 2 cut(s) 20, 292
HspAI GCGC 1 cut(s) 266
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 8 cut(s) 41, 47, 193, 257, 291, 291, 360, 429
Lsp1109I GCAGC 3 cut(s) 61, 76, 195
LweI GCATC 1 cut(s) 388
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 5 cut(s) 55, 99, 401, 431, 434
MhlI GDGCHC 1 cut(s) 252
MnlI CCTC 7 cut(s) 48, 63, 163, 238, 287, 379, 382
MseI TTAA 3 cut(s) 161, 219, 410
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 46, 73
NdeII GATC 1 cut(s) 334
NlaIII CATG 2 cut(s) 20, 292
NlaIV GGNNCC 4 cut(s) 26, 32, 249, 276
NmeAIII GCCGAG 1 cut(s) 134
NspI RCATGY 1 cut(s) 20
OliI CACNNNNGTG 1 cut(s) 191
PceI AGGCCT 1 cut(s) 309
PciI ACATGT 1 cut(s) 16
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 3 cut(s) 51, 66, 185
PscI ACATGT 1 cut(s) 16
PsiI TTATAA 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 179
PspN4I GGNNCC 4 cut(s) 26, 32, 249, 276
PstNI CAGNNNCTG 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 3 cut(s) 161, 219, 410
SatI GCNGC 3 cut(s) 50, 65, 184
Sau3AI GATC 1 cut(s) 334
SduI GDGCHC 1 cut(s) 252
SetI ASST 3 cut(s) 78, 144, 174
SfaNI GCATC 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 1 cut(s) 431
StuI AGGCCT 1 cut(s) 309
TaaI ACNGT 2 cut(s) 126, 364
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 3 cut(s) 161, 219, 410
Tru9I TTAA 3 cut(s) 161, 219, 410
TscAI CASTG 1 cut(s) 129
TseI GCWGC 3 cut(s) 49, 64, 183
TspDTI ATGAA 1 cut(s) 277
TspRI CASTG 1 cut(s) 129
XceI RCATGY 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.