Prupe.5G245400_v2.0.a1

UPF0426 protein At1g28150

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
18369345 .. 18371071
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G245400.1

Sequence Viewer

Length: 375 bp
ATGTCAGTCTTTGTTGTGAATTTTCCTTGCTGTGCACTGTGGAAATCAAAGAAGCTTGGGTTTATAAAACCATCGACATTACCAAAGCAGATGAGTCCCAGCAGCAGCACAAAAGTGCGTTTGGGGAACAATGATGGGGTTAATGCGTTTTTCTTCAATCCCACTGAGGAACCCATTCTCAGAGAAGCGCTTAAGGAGCCAGTTGCGTTCATGGGAGGGATGTTTGCTGGTCTCTTACGACTTGACTTGAATGAAGATCCACTCAAGGATTGGGTTTCAAGGACTGTGGAAGCCTCTGGGATCACCGAGGAAGAAATTGATGCTAGCGGGTTAGAACCAGAAGAAGAAGTCCCGCTACAGATTGAGATTGAATAA
Functional Annotation

Protein Analysis

125

Amino Acids

13.75

Weight (kDa)

4.59

Isoelectric Point (pI)

72.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 65
AciI CCGC 2 cut(s) 327, 353
AclWI GGATC 2 cut(s) 251, 308
AcsI RAATTY 1 cut(s) 19
AfeI AGCGCT 1 cut(s) 189
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 4 cut(s) 157, 250, 279, 371
AleI CACNNNNGTG 1 cut(s) 113
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 236
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 2 cut(s) 251, 308
Aor51HI AGCGCT 1 cut(s) 189
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 102, 105
ApoI RAATTY 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 295
AsuNHI GCTAGC 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 339, 371
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 114, 117
BccI CCATC 2 cut(s) 79, 128
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 191
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 2 cut(s) 103, 106
BlsI GCNGC 2 cut(s) 104, 107
BmiI GGNNCC 2 cut(s) 171, 198
BmsI GCATC 1 cut(s) 310
BmtI GCTAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 156, 193
BseNI ACTGG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 2 cut(s) 114, 117
BseYI CCCAGC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 37
BslFI GGGAC 2 cut(s) 81, 335
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 2 cut(s) 81, 335
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 256, 300
BspACI CCGC 2 cut(s) 327, 353
BspCNI CTCAG 2 cut(s) 157, 192
BspLI GGNNCC 2 cut(s) 171, 198
BspOI GCTAGC 1 cut(s) 327
BspPI GGATC 2 cut(s) 251, 308
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 2 cut(s) 256, 300
Bst4CI ACNGT 2 cut(s) 39, 286
BstAFI CTTAAG 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 165, 179
BstF5I GGATG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 259, 303
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 256, 300
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 356
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 114, 117
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 35, 162
Cac8I GCNNGC 1 cut(s) 325
CfoI GCGC 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 1 cut(s) 211
CviJI RGCY 3 cut(s) 55, 199, 293
CviKI_1 RGCY 3 cut(s) 55, 199, 293
DdeI CTNAG 2 cut(s) 165, 179
DpnI GATC 2 cut(s) 258, 302
DpnII GATC 2 cut(s) 256, 300
Eco31I GGTCTC 1 cut(s) 236
Eco47III AGCGCT 1 cut(s) 189
FaeI CATG 1 cut(s) 214
FaiI YATR 2 cut(s) 65, 212
FaqI GGGAC 2 cut(s) 81, 335
FatI CATG 1 cut(s) 210
FauI CCCGC 2 cut(s) 320, 360
Fnu4HI GCNGC 2 cut(s) 103, 106
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 2 cut(s) 103, 106
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 103, 106
GsaI CCCAGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 191
HhaI GCGC 1 cut(s) 190
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 1 cut(s) 94
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 35
HpyCH4III ACNGT 2 cut(s) 39, 286
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 2 cut(s) 165, 179
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 256, 300
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 112, 213, 213, 282, 351
Lsp1109I GCAGC 2 cut(s) 114, 117
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 324
MalI GATC 2 cut(s) 258, 302
MboI GATC 2 cut(s) 256, 300
MboII GAAGA 5 cut(s) 145, 266, 323, 353, 356
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 19, 315
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 4 cut(s) 160, 209, 301, 304
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 2 cut(s) 141, 192
MslI CAYNNNNRTG 1 cut(s) 113
MspCI CTTAAG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 2 cut(s) 256, 300
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 2 cut(s) 171, 198
OliI CACNNNNGTG 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 174
PkrI GCNGC 2 cut(s) 104, 107
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PsiI TTATAA 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 171, 198
PsuI RGATCY 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 2 cut(s) 141, 192
SatI GCNGC 2 cut(s) 103, 106
Sau3AI GATC 2 cut(s) 256, 300
SchI GAGTC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 37
SetI ASST 1 cut(s) 57
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 191, 263
SmoI CTYRAG 2 cut(s) 191, 263
Sse9I AATT 2 cut(s) 19, 315
SsiI CCGC 2 cut(s) 327, 353
SspMI CTAG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 39, 286
TaqI TCGA 1 cut(s) 74
TasI AATT 2 cut(s) 19, 315
Tru1I TTAA 2 cut(s) 141, 192
Tru9I TTAA 2 cut(s) 141, 192
TscAI CASTG 2 cut(s) 42, 169
TseI GCWGC 2 cut(s) 102, 105
TspDTI ATGAA 2 cut(s) 199, 267
TspRI CASTG 2 cut(s) 42, 169
Vha464I CTTAAG 1 cut(s) 191
VneI GTGCAC 1 cut(s) 33
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.