Rh7DG001300

UPF0426 protein At1g28150

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014155
Physical Location & Seq
Forward (+)
157741 .. 159022
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG001300.1

Sequence Viewer

Length: 435 bp
ATGGTTATGGTTATAAATCTACATGTCGGGAACCGGAACCAGAAGCAGCAGAGGAAGCTCAATATGTCAGTCTCACTTGTCAATGTTTCTTCGTGTGCACAGCCACTGTGGAAATCAAAGAAGCTCATAAAACCCTCGGCATTAACAAAGAAGCTGAATCCCAGCAGCACAAGAGTGCGTTTGGGAAACAATCACCGGGTTAAAGCGTTTTTCTCCAATCCTATTGAAGAGCCCATTGTCAGAAAAGCGCTTCAGGAACCAGTTGCTTTCATGGGAGGGATGTTTGCAGGCCTTCTACGACTTGATTTGAATGATGATCCACTCAAGGAGTGGGTTTCAAGGACTGTGGAAGCCTCAGGGATTACAGAGGAAGAAGTTGATGCTGAAGGATTAAACCCTGAAGAAGAAACCCCGCAACAGATTGAGATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.18

Weight (kDa)

7.87

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0426 PF26369 83 - 116 9.9e-19 UPF0426 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28150 AT1G28150
fragaria_vesca FvH4_5g18600
malus_domestica MD06G1241100.v1.1 MD14G1247300.v1.1
prunus_persica Prupe.5G245400_v2.0.a1
pyrus_communis pycom06g21620
rosa_chinensis RchiOBHm_Chr7g0176901
rosa_laevigata RLG00000005574
rosa_multiflora Rmu_sc0005310.1_g000045
rosa_roxburghii Rroxscaffold_3G00276300
rosa_rugosa Rorug06G0401700
rosa_samantha Rh7AG001200 Rh7BG001600 Rh7CG001000 Rh7DG001300
rosa_wichuraiana Rw7G000090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 14
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 311
AcuI CTGAAG 3 cut(s) 236, 405, 420
AfeI AGCGCT 1 cut(s) 249
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 4 cut(s) 227, 310, 339, 431
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 3 cut(s) 58, 124, 154
AluI AGCT 3 cut(s) 58, 124, 154
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 76
Alw44I GTGCAC 1 cut(s) 96
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 106
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 1 cut(s) 289
ApaLI GTGCAC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 46, 165
AspLEI GCGC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 185
AxyI CCTNAGG 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 58, 177
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 76
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 2 cut(s) 47, 166
BlsI GCNGC 2 cut(s) 48, 167
Bme1390I CCNGG 1 cut(s) 197
BmiI GGNNCC 3 cut(s) 32, 38, 258
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 260
Bse21I CCTNAGG 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 2 cut(s) 58, 177
BseYI CCCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 2 cut(s) 34, 196
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 1 cut(s) 291
Bsp1286I GDGCHC 2 cut(s) 100, 234
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 1 cut(s) 413
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 368
BspLI GGNNCC 3 cut(s) 32, 38, 258
BspPI GGATC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 108, 346
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 2 cut(s) 58, 177
Bsu36I CCTNAGG 1 cut(s) 355
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 289
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 2 cut(s) 23, 271
CviJI RGCY 7 cut(s) 58, 103, 124, 154, 232, 291, 353
CviKI_1 RGCY 7 cut(s) 58, 103, 124, 154, 232, 291, 353
DdeI CTNAG 1 cut(s) 355
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco147I AGGCCT 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 234
Eco47III AGCGCT 1 cut(s) 249
Eco57I CTGAAG 3 cut(s) 236, 405, 420
Eco81I CCTNAGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 2 cut(s) 26, 274
FaiI YATR 6 cut(s) 8, 14, 24, 65, 128, 272
FatI CATG 2 cut(s) 22, 270
FauI CCCGC 1 cut(s) 420
Fnu4HI GCNGC 2 cut(s) 47, 166
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 47, 166
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 47, 166
GsaI CCCAGC 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 1 cut(s) 291
HapII CCGG 2 cut(s) 34, 196
HhaI GCGC 1 cut(s) 250
Hin1II CATG 2 cut(s) 26, 274
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 1 cut(s) 157
HpaII CCGG 2 cut(s) 34, 196
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 2 cut(s) 28, 254
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 302, 380
HpyCH4III ACNGT 2 cut(s) 108, 346
HpyCH4V TGCA 2 cut(s) 98, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 355
Hsp92II CATG 2 cut(s) 26, 274
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 316
LguI GCTCTTC 1 cut(s) 222
LpnPI CCDG 9 cut(s) 47, 53, 175, 209, 239, 273, 273, 342, 411
Lsp1109I GCAGC 2 cut(s) 58, 177
LweI GCATC 1 cut(s) 370
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 5 cut(s) 81, 239, 383, 413, 416
MhlI GDGCHC 2 cut(s) 100, 234
MnlI CCTC 5 cut(s) 45, 145, 269, 361, 364
MseI TTAA 3 cut(s) 143, 201, 392
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 2 cut(s) 34, 196
MspR9I CCNGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 197
NdeII GATC 1 cut(s) 316
NlaIII CATG 2 cut(s) 26, 274
NlaIV GGNNCC 3 cut(s) 32, 38, 258
NmeAIII GCCGAG 1 cut(s) 116
NspI RCATGY 1 cut(s) 26
OliI CACNNNNGTG 1 cut(s) 173
PceI AGGCCT 1 cut(s) 291
PciI ACATGT 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 48, 167
PscI ACATGT 1 cut(s) 22
PsiI TTATAA 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 161
PspN4I GGNNCC 3 cut(s) 32, 38, 258
PstNI CAGNNNCTG 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 143, 201, 392
SatI GCNGC 2 cut(s) 47, 166
Sau3AI GATC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 2 cut(s) 100, 234
SetI ASST 3 cut(s) 60, 126, 156
SfaNI GCATC 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 1 cut(s) 413
StuI AGGCCT 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 108, 346
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 3 cut(s) 143, 201, 392
Tru9I TTAA 3 cut(s) 143, 201, 392
TscAI CASTG 1 cut(s) 111
TseI GCWGC 2 cut(s) 46, 165
TspDTI ATGAA 1 cut(s) 259
TspRI CASTG 1 cut(s) 111
VneI GTGCAC 1 cut(s) 96
XceI RCATGY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.