Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004470

Physical Location & Seq

Genomic Coordinates Reverse (-)

10190137 .. 10195213

Gene Structure 5077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3063 bp

ATGCCACGGAATGTATACGGTATGAACCAAAGCGAGGTGTATAGAAATGTCGATCGTGAAGACCCTAAAGCAATTCTCAATGGTGTTGCAGTTACTGGACTTGTTGGGGTCTTGCGTCAGCTTGGTGATCTCGCTGAGTTTGCAGCAGAGATATTTCATGGGATACAGGAGGAAGTTATGGCTACAGCTTCAAGAAGCAATCAGTTAAAGATTAGATTGCAGCATATAGAAGCTACAGTGCCTCCACTAGAAAAGGCGATGCTTGCACAAACAACTCATATACATTTTGCATACACAGGAGGTCTGGAGTGGCATCCTCGTATCCCAATTACGCAAAATCACTTAATTTATGACGACTTGCCTCACATTATTATGGATCCCTATGAAGAATGCAGGGGTCCTCCACGGTTACACTTGCTTGATAAATTTGATATAAATGGTCCTGGATCTTGCTTGAAGCGATACTCAGATCCTACTTATTTCAGAAGAGCATCAAGCAACCTGAGTCAAGGAAACAAGAAGTTCCAAAAAGATAAAAAGCATTGTAAAATGAAGAAGAAAAAAACTTCGTCAAGGAGTCGAGATATGTCACGTTTGGCCTCCTTGGCTAACCAGAATGCCAGGAAGACATTTGCTTCATTTAGCTTCAGTGGACAAACCTCTTCTACCAAAACCACCTCAACCAGTGACATGGAAAAAAGATATGATTTTCAAGATCATCATTCTCGCTCTTTTGAGTCCAGAAGTGGTTCAGGCTACAATGAATGCCTTTCAACTGCAACTTCTTCACTGAAGACTGGAGAAAGACCGAAAGGGGTGTTCGTTTCATCCAGCTTGACACCAGGCTCTTGCACTATTGCTTCAGTCCTTTCTGAATGTGAAACCGAAGATGCTCATGATAATTTCCAGTTTAGTCCTTCTCAAGGGCAAGCTGCTCGTGGCTCTTCTTGCGTTAGTTGGGATGAGAAAGCAGAGATAGTGGAATCTCTTGGTCTGCAGACAGATGAAGCTTCTGAAATGGTGGAGGCGAACTCTGTTGTAGATACTCTAGATGAGAAACCAAGCTATGGGGAAGGGATAGGTGGAGTTGATTTCCATTCTAAGGACAATGAAAATGATAAATCAGAATCAGGACTACGAAAACGTGCTGGGATTGATGAGGTAAGAGAGATAAAAAATGGTCGGGAGATTGTGGGAGAACCGAGGGATAGTGAACAAGAGACTGAAAGCGAAGGGGAGTGTTTTGTTGATGCGCTTAATACTATCGAATCAGAATCTGAAAACAATCAAGGGCTTCAAACTAGTCAAGTGAGCAGTTCCTGTGGTGTTGCAGATGAGAGGTTGGAAAAGTCAGTGTGTGAGCAAGAAACAGAGCAGAATTCCTACAGTGTCGAAGATTCTTGCAGATCAATGGATGGGCTTATGGCCAACAGTTTTAAAAATGAAGAGAATGCATCGTCAGAAAATGTATCTGTTGAAATGCATCAACAAAATCTACAGGCGGGTTCAGATATCAACCGCTTACAAAAAAATGATCTTTGTGCAAACAAGGATATGCGTAATGATTCTGGTGGAAAAGATACCATCACATTTACATTTGTGCCAGGTCTCGAGAACAGCTTAGTTGATTCATCAAACCCCTTGATTCATCATGGCCTACAGGAAAATCAAGAAACAGAAGCTGAATCTTCTGGGGATCTCGAAGCCTTTAAAATATGGACTAATGGTGGTCTATTGGGACTGAAACCATCGAAACCTCCAGTCTTGGCAATGCCAAGTTCTTTAAGTCCAGATTGCAAGACCGAGGAAAGGACAGTTGGTTTTGCAGAAGCTGAAAAAGATAAAGCAGATGATCTAGTTGAAAATGCTTCACATAGACATGTTCTGAATAATTCAAGCTTAGCAACGCCAGGAACCCAAAATCCAGGTAGTTCAAATGGCATAGTCATGGGTATTGTAGACCAAAGAGAGTCCCATGAGACTTCTTCTGGAGTTTTTGGACTCAGCCACAAGTTTCTTACTAGTGGTTTCCGCAGAAAGGATTCATTTGCACATGATAGAAAGACTGTACCAGCAACGATTCCAGAGAACGATGAAGTGACTACAGAGAGGAGGAGGTTTTGTGACCAAGATATTAATGAGAAAACCTTTATGGACCCCTTCAGAGACGAAGCTCCTATTGATTGGATCACTTCGTCTCCGCCTCTTCAACACATGAAAATATCTCTCAATCCCGCTGACACTCTTCAGGCTTCGAGACTGAAGCTTAAATTTTCAGATGGAGACAACACTTACAATACCTTTTCCTCCTTCCAGTTGCTTCCAGAGACTGGAACTTCCCTTCCTGATTCTTATTCTGACGACGACACTTTTTGTAGATCATCTCCTTACATGTCAGATACCGATTATCTTAGCGATAATCACTCCTTGTCAAATTCTGAGCCGTGGGAAGAATCCAGTGACAGCCATGGAAGAAAAGAGCAAGAACTATATGATTCTTTCCACGAAAGTAGGCATGTTGATAACAATGCTGAAGCTTCCCCTCTAGGGATCAAATCAGAAAGTTCTTGCGTCGCCGTAAACCTCTCATATCTCCAAAATCCTGCTGAGCCCTTACCACCGCCATTTCCACCCATGCAATGGATGGTTTCAAAGACACCTTCAGAGAAAATGGAAGACAAAACACAGTCCCTACAACTACAAGAAGCTCTCAGGTTTGCGTTTGAGAAGCATATTTCATTGCCTACAGCTAAGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGGCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAGGAGACTGAAACTGGAGACTTCTTGCAACAAATCCGAACACAACAATTCAACCTTAGGCCTGTGGTCATGACAACGACATCATCGGCTACTGCAACAACTGACCCTATCATAAACACTAAGATCAGCGCGATTTTGGAGAAAGCAAACTCAATACGCCAGGCTGTAGCTAGCAAAGATGGAGATGAAAGCGATACATGGAGTGATACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1020

Amino Acids

113.03

Weight (kDa)

5.02

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29170 AT1G29170 AT1G29170 AT2G34150 AT2G34150 AT2G34150 AT2G34150 AT2G34150
fragaria_vesca	FvH4_3g07780 FvH4_3g07780 FvH4_3g07780 FvH4_3g07780
malus_domestica	MD00G1207000.v1.1 MD05G1300900.v1.1 MD05G1301000.v1.1 MD10G1279900.v1.1
prunus_persica	Prupe.4G061600_v2.0.a1 Prupe.4G061600_v2.0.a1
pyrus_communis	pycom05g27880 pycom10g23370
rosa_chinensis	RchiOBHm_Chr5g0010801
rosa_laevigata	RLG00000031781
rosa_multiflora	Rmu_sc0000109.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065580
rosa_rugosa	Rorug04G0452600 Rorug04G0452700
rosa_samantha	Rh5AG084800 Rh5BG079600 Rh5CG092300 Rh5DG079700
rosa_wichuraiana	Rw0G000540 Rw0G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	1067, 2330, 2640
AccI	GTMKAC	2 cut(s)	15, 1959
AccII	CGCG	1 cut(s)	2981
AciI	CCGC	6 cut(s)	1502, 1519, 2032, 2201, 2235, 2621
AclWI	GGATC	7 cut(s)	371, 384, 454, 464, 1704, 2195, 2558
AcoI	YGGCCR	1 cut(s)	1425
AcsI	RAATTY	4 cut(s)	425, 1378, 2270, 2434
AcuI	CTGAAG	9 cut(s)	631, 812, 846, 2146, 2231, 2282, 2553, 2646, 2831
AfaI	GTAC	1 cut(s)	2070
AfiI	CCNNNNNNNGG	9 cut(s)	34, 923, 1067, 1102, 1809, 2038, 2330, 2547, 2640
AflIII	ACRYGT	2 cut(s)	1879, 2391
AhlI	ACTAGT	2 cut(s)	1301, 2021
AjnI	CCWGG	7 cut(s)	442, 620, 841, 1603, 1909, 1924, 3009
AjuI	GAANNNNNNNTTGG	2 cut(s)	1800, 1832
AloI	GAACNNNNNNTCC	4 cut(s)	1906, 1938, 2326, 2358
AlwI	GGATC	7 cut(s)	371, 384, 454, 464, 1704, 2195, 2558
AlwNI	CAGNNNCTG	6 cut(s)	95, 1277, 1320, 1682, 1832, 2330
Ama87I	CYCGRG	1 cut(s)	1610
AoxI	GGCC	5 cut(s)	597, 1425, 1654, 2802, 2909
ApeKI	GCWGC	3 cut(s)	143, 220, 932
ApoI	RAATTY	4 cut(s)	425, 1378, 2270, 2434
AseI	ATTAAT	1 cut(s)	2136
Asp700I	GAANNNNTTC	2 cut(s)	748, 2041
AspLEI	GCGC	2 cut(s)	1255, 2981
AspS9I	GGNCC	4 cut(s)	398, 440, 2155, 2803
AsuHPI	GGTGA	2 cut(s)	137, 2785
AsuNHI	GCTAGC	1 cut(s)	3020
AvaI	CYCGRG	1 cut(s)	1610
AvaII	GGWCC	3 cut(s)	398, 440, 2155
AxyI	CCTNAGG	1 cut(s)	2906
BalI	TGGCCA	1 cut(s)	1427
BamHI	GGATCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	2613
BauI	CACGAG	1 cut(s)	936
BbsI	GAAGAC	4 cut(s)	66, 632, 800, 2682
BbvI	GCAGC	3 cut(s)	155, 232, 919
BccI	CCATC	7 cut(s)	1409, 1592, 1756, 2273, 2638, 2814, 3023
BceAI	ACGGC	2 cut(s)	2428, 2561
BcgI	CGANNNNNNTGC	2 cut(s)	917, 951
BciT130I	CCWGG	7 cut(s)	444, 622, 843, 1605, 1911, 1926, 3011
BciVI	GTATCC	2 cut(s)	156, 332
BcuI	ACTAGT	2 cut(s)	1301, 2021
BfaI	CTAG	8 cut(s)	248, 1049, 1302, 1856, 2022, 2546, 2766, 3021
BfmI	CTRYAG	9 cut(s)	183, 234, 995, 1384, 1496, 1658, 2103, 2745, 3015
BfuI	GTATCC	2 cut(s)	156, 332
BglI	GCCNNNNNGGC	1 cut(s)	605
BisI	GCNGC	3 cut(s)	144, 221, 933
BlpI	GCTNAGC	2 cut(s)	1900, 2607
BlsI	GCNGC	3 cut(s)	145, 222, 934
Bme1390I	CCNGG	7 cut(s)	444, 622, 843, 1605, 1911, 1926, 3011
Bme18I	GGWCC	3 cut(s)	398, 440, 2155
BmeT110I	CYCGRG	1 cut(s)	1610
BmgT120I	GGNCC	4 cut(s)	398, 440, 2155, 2803
BmiI	GGNNCC	4 cut(s)	378, 399, 1915, 2157
BmrFI	CCNGG	7 cut(s)	444, 622, 843, 1605, 1911, 1926, 3011
BmsI	GCATC	7 cut(s)	249, 322, 500, 880, 1240, 1463, 1492
BmtI	GCTAGC	1 cut(s)	3024
BpiI	GAAGAC	4 cut(s)	66, 632, 800, 2682
BplI	GAGNNNNNCTC	2 cut(s)	1016, 1048
BpmI	CTGGAG	5 cut(s)	326, 819, 1743, 2010, 2886
Bpu1102I	GCTNAGC	2 cut(s)	1900, 2607
BpuEI	CTTGAG	1 cut(s)	906
BsaAI	YACGTR	1 cut(s)	3060
BsaI	GGTCTC	1 cut(s)	1613
BsaJI	CCNNGG	7 cut(s)	5, 404, 603, 1202, 1803, 2444, 2467
BsaXI	ACNNNNNCTCC	8 cut(s)	226, 256, 2107, 2137, 2182, 2212, 2767, 2797
Bsc4I	CCNNNNNNNGG	9 cut(s)	34, 923, 1067, 1102, 1809, 2038, 2330, 2547, 2640
Bse1I	ACTGG	9 cut(s)	100, 684, 802, 907, 1760, 2314, 2335, 2457, 2869
Bse21I	CCTNAGG	1 cut(s)	2906
Bse3DI	GCAATG	3 cut(s)	1776, 2645, 2738
BseBI	CCWGG	7 cut(s)	444, 622, 843, 1605, 1911, 1926, 3011
BseDI	CCNNGG	7 cut(s)	5, 404, 603, 1202, 1803, 2444, 2467
BseGI	GGATG	5 cut(s)	313, 827, 967, 1420, 2649
BseLI	CCNNNNNNNGG	9 cut(s)	34, 923, 1067, 1102, 1809, 2038, 2330, 2547, 2640
BseMI	GCAATG	3 cut(s)	1776, 2645, 2738
BseMII	CTCAG	7 cut(s)	126, 480, 494, 2017, 2430, 2598, 2725
BseNI	ACTGG	9 cut(s)	100, 684, 802, 907, 1760, 2314, 2335, 2457, 2869
BseRI	GAGGAG	3 cut(s)	2125, 2128, 2843
BseXI	GCAGC	3 cut(s)	155, 232, 919
BseYI	CCCAGC	1 cut(s)	1148
Bsh1236I	CGCG	1 cut(s)	2981
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	5 cut(s)	599, 1427, 1656, 2804, 2911
BsiEI	CGRYCG	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	1610
BslFI	GGGAC	3 cut(s)	1752, 1957, 2674
BslI	CCNNNNNNNGG	9 cut(s)	34, 923, 1067, 1102, 1809, 2038, 2330, 2547, 2640
BsmBI	CGTCTC	2 cut(s)	2160, 2202
BsmFI	GGGAC	3 cut(s)	1752, 1957, 2674
BsmI	GAATGC	4 cut(s)	395, 622, 770, 1456
BsnI	GGCC	5 cut(s)	599, 1427, 1656, 2804, 2911
Bso31I	GGTCTC	1 cut(s)	1613
BsoBI	CYCGRG	1 cut(s)	1610
Bsp1286I	GDGCHC	1 cut(s)	2613
Bsp1720I	GCTNAGC	2 cut(s)	1900, 2607
Bsp19I	CCATGG	1 cut(s)	2467
BspACI	CCGC	6 cut(s)	1502, 1519, 2032, 2201, 2235, 2621
BspANI	GGCC	5 cut(s)	599, 1427, 1656, 2804, 2911
BspCNI	CTCAG	7 cut(s)	127, 479, 495, 2016, 2431, 2599, 2724
BspFNI	CGCG	1 cut(s)	2981
BspHI	TCATGA	2 cut(s)	895, 2919
BspLI	GGNNCC	4 cut(s)	378, 399, 1915, 2157
BspMAI	CTGCAG	1 cut(s)	999
BspOI	GCTAGC	1 cut(s)	3024
BspPI	GGATC	7 cut(s)	371, 384, 454, 464, 1704, 2195, 2558
BspQI	GCTCTTC	2 cut(s)	481, 949
BspTNI	GGTCTC	1 cut(s)	1613
BsrDI	GCAATG	3 cut(s)	1776, 2645, 2738
BsrI	ACTGG	9 cut(s)	100, 684, 802, 907, 1760, 2314, 2335, 2457, 2869
BssECI	CCNNGG	7 cut(s)	5, 404, 603, 1202, 1803, 2444, 2467
BssNAI	GTATAC	1 cut(s)	16
BssSI	CACGAG	1 cut(s)	936
BssT1I	CCWWGG	2 cut(s)	603, 2467
Bst1107I	GTATAC	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	936
Bst2UI	CCWGG	7 cut(s)	444, 622, 843, 1605, 1911, 1926, 3011
Bst4CI	ACNGT	8 cut(s)	20, 238, 408, 1388, 1433, 1816, 2068, 2688
Bst6I	CTCTTC	6 cut(s)	481, 667, 949, 1440, 2211, 2250
BstBAI	YACGTR	1 cut(s)	3060
BstC8I	GCNNGC	3 cut(s)	264, 930, 3022
BstDSI	CCRYGG	4 cut(s)	5, 404, 2444, 2467
BstENI	CCTNNNNNAGG	1 cut(s)	921
BstF5I	GGATG	5 cut(s)	313, 827, 967, 1420, 2649
BstFNI	CGCG	1 cut(s)	2981
BstHHI	GCGC	2 cut(s)	1255, 2981
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 263, 605, 948
BstNI	CCWGG	7 cut(s)	444, 622, 843, 1605, 1911, 1926, 3011
BstNSI	RCATGY	3 cut(s)	1883, 2395, 2519
BstSCI	CCNGG	7 cut(s)	442, 620, 841, 1603, 1909, 1924, 3009
BstSFI	CTRYAG	9 cut(s)	183, 234, 995, 1384, 1496, 1658, 2103, 2745, 3015
BstSNI	TACGTA	1 cut(s)	3060
BstUI	CGCG	1 cut(s)	2981
BstV1I	GCAGC	3 cut(s)	155, 232, 919
BstV2I	GAAGAC	4 cut(s)	66, 632, 800, 2682
BstX2I	RGATCY	4 cut(s)	376, 446, 469, 1696
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstYI	RGATCY	4 cut(s)	376, 446, 469, 1696
BstZ17I	GTATAC	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	2906
BsuI	GTATCC	2 cut(s)	156, 332
BsuRI	GGCC	5 cut(s)	599, 1427, 1656, 2804, 2911
BtgI	CCRYGG	4 cut(s)	5, 404, 2444, 2467
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	5 cut(s)	313, 827, 967, 1420, 2649
BtsIMutI	CAGTG	7 cut(s)	243, 655, 691, 788, 1359, 1393, 2464
Cac8I	GCNNGC	3 cut(s)	264, 930, 3022
CaiI	CAGNNNCTG	6 cut(s)	95, 1277, 1320, 1682, 1832, 2330
CciI	TCATGA	2 cut(s)	895, 2919
CfoI	GCGC	2 cut(s)	1255, 2981
Cfr13I	GGNCC	4 cut(s)	398, 440, 2155, 2803
CseI	GACGC	2 cut(s)	104, 2560
Csp6I	GTAC	1 cut(s)	2069
CviQI	GTAC	1 cut(s)	2069
DraI	TTTAAA	2 cut(s)	1438, 1711
EaeI	YGGCCR	1 cut(s)	1425
Eam1104I	CTCTTC	6 cut(s)	481, 667, 949, 1440, 2211, 2250
EarI	CTCTTC	6 cut(s)	481, 667, 949, 1440, 2211, 2250
EciI	GGCGGA	1 cut(s)	2190
Eco105I	TACGTA	1 cut(s)	3060
Eco130I	CCWWGG	2 cut(s)	603, 2467
Eco147I	AGGCCT	1 cut(s)	2911
Eco24I	GRGCYC	1 cut(s)	2613
Eco31I	GGTCTC	1 cut(s)	1613
Eco32I	GATATC	1 cut(s)	1513
Eco47I	GGWCC	3 cut(s)	398, 440, 2155
Eco57I	CTGAAG	9 cut(s)	631, 812, 846, 2146, 2231, 2282, 2553, 2646, 2831
Eco81I	CCTNAGG	1 cut(s)	2906
Eco88I	CYCGRG	1 cut(s)	1610
EcoNI	CCTNNNNNAGG	1 cut(s)	921
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRI	GAATTC	1 cut(s)	1378
EcoRII	CCWGG	7 cut(s)	442, 620, 841, 1603, 1909, 1924, 3009
EcoRV	GATATC	1 cut(s)	1513
EcoT14I	CCWWGG	2 cut(s)	603, 2467
EcoT22I	ATGCAT	2 cut(s)	1456, 1485
EcoT38I	GRGCYC	1 cut(s)	2613
ErhI	CCWWGG	2 cut(s)	603, 2467
Esp3I	CGTCTC	2 cut(s)	2160, 2202
FaqI	GGGAC	3 cut(s)	1752, 1957, 2674
FauI	CCCGC	2 cut(s)	1495, 2242
FblI	GTMKAC	2 cut(s)	15, 1959
Fnu4HI	GCNGC	3 cut(s)	144, 221, 933
FokI	GGATG	5 cut(s)	300, 814, 974, 1427, 2656
FriOI	GRGCYC	1 cut(s)	2613
Fsp4HI	GCNGC	3 cut(s)	144, 221, 933
FspBI	CTAG	8 cut(s)	248, 1049, 1302, 1856, 2022, 2546, 2766, 3021
GlaI	GCGC	2 cut(s)	1254, 2980
GluI	GCNGC	3 cut(s)	144, 221, 933
GsaI	CCCAGC	1 cut(s)	1152
GsuI	CTGGAG	5 cut(s)	326, 819, 1743, 2010, 2886
HaeIII	GGCC	5 cut(s)	599, 1427, 1656, 2804, 2911
HgaI	GACGC	2 cut(s)	104, 2560
HhaI	GCGC	2 cut(s)	1255, 2981
Hin6I	GCGC	2 cut(s)	1253, 2979
HinP1I	GCGC	2 cut(s)	1253, 2979
HindIII	AAGCTT	4 cut(s)	1008, 1897, 2264, 2535
HphI	GGTGA	2 cut(s)	137, 2785
Hpy166II	GTNNAC	5 cut(s)	16, 653, 1214, 1960, 2581
Hpy8I	GTNNAC	5 cut(s)	16, 653, 1214, 1960, 2581
Hpy99I	CGWCG	2 cut(s)	2366, 2576
HpyAV	CCTTC	7 cut(s)	927, 1067, 1226, 2170, 2320, 2351, 2670
HpyCH4III	ACNGT	8 cut(s)	20, 238, 408, 1388, 1433, 1816, 2068, 2688
HpyCH4IV	ACGT	3 cut(s)	592, 1144, 3059
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 263, 605, 948
HpySE526I	ACGT	3 cut(s)	592, 1144, 3059
HspAI	GCGC	2 cut(s)	1253, 2979
LguI	GCTCTTC	2 cut(s)	481, 949
LmnI	GCTCC	2 cut(s)	2179, 2788
Lsp1109I	GCAGC	3 cut(s)	155, 232, 919
LweI	GCATC	7 cut(s)	249, 322, 500, 880, 1240, 1463, 1492
MaeI	CTAG	8 cut(s)	248, 1049, 1302, 1856, 2022, 2546, 2766, 3021
MaeII	ACGT	3 cut(s)	592, 1144, 3059
MaeIII	GTNAC	8 cut(s)	91, 408, 588, 686, 2098, 2123, 2459, 2773
MflI	RGATCY	4 cut(s)	376, 446, 469, 1696
MhlI	GDGCHC	1 cut(s)	2613
MlsI	TGGCCA	1 cut(s)	1427
MluNI	TGGCCA	1 cut(s)	1427
MlyI	GAGTC	5 cut(s)	514, 586, 746, 1979, 1995
MmeI	TCCRAC	1 cut(s)	1323
Mox20I	TGGCCA	1 cut(s)	1427
Mph1103I	ATGCAT	2 cut(s)	1456, 1485
MroXI	GAANNNNTTC	2 cut(s)	748, 2041
MscI	TGGCCA	1 cut(s)	1427
MseI	TTAA	9 cut(s)	206, 344, 1257, 1437, 1710, 1784, 2136, 2268, 2799
MslI	CAYNNNNRTG	3 cut(s)	371, 1878, 1946
Msp20I	TGGCCA	1 cut(s)	1427
MspA1I	CMGCKG	1 cut(s)	2237
MspR9I	CCNGG	7 cut(s)	444, 622, 843, 1605, 1911, 1926, 3011
Mva1269I	GAATGC	4 cut(s)	395, 622, 770, 1456
MvaI	CCWGG	7 cut(s)	444, 622, 843, 1605, 1911, 1926, 3011
MvnI	CGCG	1 cut(s)	2981
MwoI	GCNNNNNNNGC	4 cut(s)	140, 263, 605, 948
NcoI	CCATGG	1 cut(s)	2467
NheI	GCTAGC	1 cut(s)	3020
NlaIV	GGNNCC	4 cut(s)	378, 399, 1915, 2157
NmuCI	GTSAC	6 cut(s)	588, 686, 2098, 2123, 2459, 2773
NsiI	ATGCAT	2 cut(s)	1456, 1485
NspI	RCATGY	3 cut(s)	1883, 2395, 2519
PaeR7I	CTCGAG	1 cut(s)	1610
PagI	TCATGA	2 cut(s)	895, 2919
PceI	AGGCCT	1 cut(s)	2911
PciI	ACATGT	2 cut(s)	1879, 2391
PciSI	GCTCTTC	2 cut(s)	481, 949
PctI	GAATGC	4 cut(s)	395, 622, 770, 1456
PdmI	GAANNNNTTC	2 cut(s)	748, 2041
PflMI	CCANNNNNTGG	3 cut(s)	1067, 2330, 2640
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	3 cut(s)	145, 222, 934
Ple19I	CGATCG	1 cut(s)	55
PleI	GAGTC	5 cut(s)	513, 585, 745, 1978, 1995
PpsI	GAGTC	5 cut(s)	513, 585, 745, 1978, 1995
Ppu21I	YACGTR	1 cut(s)	3060
PpuMI	RGGWCCY	1 cut(s)	398
PscI	ACATGT	2 cut(s)	1879, 2391
PshBI	ATTAAT	1 cut(s)	2136
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	7 cut(s)	442, 620, 841, 1603, 1909, 1924, 3009
PspFI	CCCAGC	1 cut(s)	1148
PspGI	CCWGG	7 cut(s)	442, 620, 841, 1603, 1909, 1924, 3009
PspN4I	GGNNCC	4 cut(s)	378, 399, 1915, 2157
PspPI	GGNCC	4 cut(s)	398, 440, 2155, 2803
PspPPI	RGGWCCY	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	999
PstNI	CAGNNNCTG	6 cut(s)	95, 1277, 1320, 1682, 1832, 2330
PsuI	RGATCY	4 cut(s)	376, 446, 469, 1696
PvuI	CGATCG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	2070
RsaNI	GTAC	1 cut(s)	2069
RseI	CAYNNNNRTG	3 cut(s)	371, 1878, 1946
SapI	GCTCTTC	2 cut(s)	481, 949
SaqAI	TTAA	9 cut(s)	206, 344, 1257, 1437, 1710, 1784, 2136, 2268, 2799
SatI	GCNGC	3 cut(s)	144, 221, 933
Sau96I	GGNCC	4 cut(s)	398, 440, 2155, 2803
SchI	GAGTC	5 cut(s)	514, 586, 746, 1979, 1995
ScrFI	CCNGG	7 cut(s)	444, 622, 843, 1605, 1911, 1926, 3011
SduI	GDGCHC	1 cut(s)	2613
SfaNI	GCATC	7 cut(s)	249, 322, 500, 880, 1240, 1463, 1492
SfcI	CTRYAG	9 cut(s)	183, 234, 995, 1384, 1496, 1658, 2103, 2745, 3015
Sfr274I	CTCGAG	1 cut(s)	1610
SinI	GGWCC	3 cut(s)	398, 440, 2155
SlaI	CTCGAG	1 cut(s)	1610
SmiMI	CAYNNNNRTG	3 cut(s)	371, 1878, 1946
SmlI	CTYRAG	2 cut(s)	921, 1610
SmoI	CTYRAG	2 cut(s)	921, 1610
SnaBI	TACGTA	1 cut(s)	3060
SpeI	ACTAGT	2 cut(s)	1301, 2021
SseBI	AGGCCT	1 cut(s)	2911
SsiI	CCGC	6 cut(s)	1502, 1519, 2032, 2201, 2235, 2621
SspMI	CTAG	8 cut(s)	248, 1049, 1302, 1856, 2022, 2546, 2766, 3021
StuI	AGGCCT	1 cut(s)	2911
StyD4I	CCNGG	7 cut(s)	442, 620, 841, 1603, 1909, 1924, 3009
StyI	CCWWGG	2 cut(s)	603, 2467
TaaI	ACNGT	8 cut(s)	20, 238, 408, 1388, 1433, 1816, 2068, 2688
TaiI	ACGT	3 cut(s)	595, 1147, 3062
TaqI	TCGA	8 cut(s)	51, 580, 1266, 1392, 1611, 1701, 1751, 2255
TaqII	GACCGA	2 cut(s)	823, 1817
Tru1I	TTAA	9 cut(s)	206, 344, 1257, 1437, 1710, 1784, 2136, 2268, 2799
Tru9I	TTAA	9 cut(s)	206, 344, 1257, 1437, 1710, 1784, 2136, 2268, 2799
TscAI	CASTG	7 cut(s)	243, 655, 691, 795, 1359, 1393, 2464
TseFI	GTSAC	6 cut(s)	588, 686, 2098, 2123, 2459, 2773
TseI	GCWGC	3 cut(s)	143, 220, 932
Tsp45I	GTSAC	6 cut(s)	588, 686, 2098, 2123, 2459, 2773
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	7 cut(s)	243, 655, 691, 795, 1359, 1393, 2464
Van91I	CCANNNNNTGG	3 cut(s)	1067, 2330, 2640
VpaK11BI	GGWCC	3 cut(s)	398, 440, 2155
VspI	ATTAAT	1 cut(s)	2136
XagI	CCTNNNNNAGG	1 cut(s)	921
XapI	RAATTY	4 cut(s)	425, 1378, 2270, 2434
XbaI	TCTAGA	1 cut(s)	1048
XceI	RCATGY	3 cut(s)	1883, 2395, 2519
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2637, 2641
XhoI	CTCGAG	1 cut(s)	1610
XmiI	GTMKAC	2 cut(s)	15, 1959
XmnI	GAANNNNTTC	2 cut(s)	748, 2041
XspI	CTAG	8 cut(s)	248, 1049, 1302, 1856, 2022, 2546, 2766, 3021
Zsp2I	ATGCAT	2 cut(s)	1456, 1485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.