Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004470

Physical Location & Seq

Genomic Coordinates Forward (+)

50397419 .. 50398390

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1207000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGATGACACATTCTGTAGATCATCTCTCATATATATCAGATGATTGTCATAGTCAACTCTCGGAGTCGAATTCTGAACAATGGGAATCTAGTGAAACTCTAGAAAGAAATAACCATGGACTGTATGATGGTTTATGTGGAATCTCATCAGAGGAACTTATATCCACCTCCCCGGAACTGGGCGGAATATCCCATAATGCCACTTATGATGATGGTGGAAGTAAAAGTGTGCACACCGAGAATGGTCTGGAACATTCTCTCTCTGATCCTGTACTTGATCTTCCAAGTTTCGATGCTTTGGGACCTGTACTTCAGCAAGAAACAAAAGATGATTCAGATCCAAAGGATCTCCCCGGTTTGAGATGTTCAGTGGATTATACACCAGGACCACCACCTCTCCCTCCAGTGGAATGGCGTGCTTCAAAACCTCCCTCGAATGTTACAGAAGAAAAACAAGATGCATTCGAAGGTTTTCGACATGCATTAAATGCAGAACTATTGGGGTCTATCACCCTCCAGCAACCTAAGCCACCAGTACAGCAACAACAAATGAATGAGGATTTCATTAAACCAAAACGCAAGGACCAGCACTTGAATGGGCAGAAAGAAGCTGATCAGGCTCTTAATGGCAAAGGGATGGACGAAAAAGAAGATTTCCTACAACAAATCAGAACAAAGGTGAGTCACCTTTTTTTCTTGTCATTTGGCTGCTTTCCAAGTATAAGTCACTTTGTGTTTGTACTGGAGCGTTTCATACTCGTATGTGAAACATGCCAAATCGAGGTTTTTCTCATCTCTTCTACTGCCGCGGATCCATATAAGCTCTATTACTTAGAGCAGGCCTGGTTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

31.86

Weight (kDa)

4.65

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29170 AT1G29170 AT1G29170 AT2G34150 AT2G34150 AT2G34150 AT2G34150 AT2G34150
fragaria_vesca	FvH4_3g07780 FvH4_3g07780 FvH4_3g07780 FvH4_3g07780
malus_domestica	MD00G1207000.v1.1 MD05G1300900.v1.1 MD05G1301000.v1.1 MD10G1279900.v1.1
prunus_persica	Prupe.4G061600_v2.0.a1 Prupe.4G061600_v2.0.a1
pyrus_communis	pycom05g27880 pycom10g23370
rosa_chinensis	RchiOBHm_Chr5g0010801
rosa_laevigata	RLG00000031781
rosa_multiflora	Rmu_sc0000109.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065580
rosa_rugosa	Rorug04G0452600 Rorug04G0452700
rosa_samantha	Rh5AG084800 Rh5BG079600 Rh5CG092300 Rh5DG079700
rosa_wichuraiana	Rw0G000540 Rw0G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	809
AciI	CCGC	3 cut(s)	183, 807, 809
AclWI	GGATC	5 cut(s)	260, 332, 354, 806, 819
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	296
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	5 cut(s)	273, 309, 537, 741, 851
AfiI	CCNNNNNNNGG	4 cut(s)	178, 179, 406, 781
AgsI	TTSAA	2 cut(s)	423, 595
AjnI	CCWGG	2 cut(s)	382, 842
AluBI	AGCT	2 cut(s)	611, 823
AluI	AGCT	2 cut(s)	611, 823
Alw21I	GWGCWC	1 cut(s)	234
Alw44I	GTGCAC	1 cut(s)	230
AlwI	GGATC	5 cut(s)	260, 332, 354, 806, 819
AoxI	GGCC	1 cut(s)	840
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	708
ApoI	RAATTY	1 cut(s)	70
Asp700I	GAANNNNTTC	1 cut(s)	471
AspS9I	GGNCC	3 cut(s)	302, 386, 583
AsuC2I	CCSGG	2 cut(s)	173, 354
AsuHPI	GGTGA	3 cut(s)	502, 677, 691
AsuII	TTCGAA	1 cut(s)	465
AvaII	GGWCC	3 cut(s)	302, 386, 583
BaeGI	GKGCMC	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	811
BarI	GAAGNNNNNNTAC	4 cut(s)	264, 296, 642, 674
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	695
BccI	CCATC	3 cut(s)	122, 206, 631
BciT130I	CCWGG	2 cut(s)	384, 844
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	2 cut(s)	173, 354
BfaI	CTAG	2 cut(s)	90, 101
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	2 cut(s)	709, 807
BlsI	GCNGC	2 cut(s)	710, 808
Bme1390I	CCNGG	4 cut(s)	173, 354, 384, 844
Bme18I	GGWCC	3 cut(s)	302, 386, 583
BmgT120I	GGNCC	3 cut(s)	302, 386, 583
BmiI	GGNNCC	2 cut(s)	303, 813
BmrFI	CCNGG	4 cut(s)	173, 354, 384, 844
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	283, 448
BmuI	ACTGGG	1 cut(s)	188
BpmI	CTGGAG	3 cut(s)	387, 500, 764
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	465
BpuMI	CCSGG	2 cut(s)	173, 354
BsaBI	GATNNNNATC	1 cut(s)	336
BsaJI	CCNNGG	4 cut(s)	115, 171, 352, 807
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 179, 406, 781
Bse1I	ACTGG	4 cut(s)	183, 404, 533, 747
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	384, 844
BseDI	CCNNGG	4 cut(s)	115, 171, 352, 807
BseGI	GGATG	1 cut(s)	642
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	4 cut(s)	178, 179, 406, 781
BseNI	ACTGG	4 cut(s)	183, 404, 533, 747
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	695
Bsh1236I	CGCG	1 cut(s)	809
BshFI	GGCC	1 cut(s)	842
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	173, 354
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	4 cut(s)	178, 179, 406, 781
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	842
Bsp119I	TTCGAA	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	7 cut(s)	19, 265, 277, 337, 346, 613, 811
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	3 cut(s)	183, 807, 809
BspANI	GGCC	1 cut(s)	842
BspFNI	CGCG	1 cut(s)	809
BspLI	GGNNCC	2 cut(s)	303, 813
BspPI	GGATC	5 cut(s)	260, 332, 354, 806, 819
BspT104I	TTCGAA	1 cut(s)	465
BsrI	ACTGG	4 cut(s)	183, 404, 533, 747
BssECI	CCNNGG	4 cut(s)	115, 171, 352, 807
BssMI	GATC	7 cut(s)	19, 265, 277, 337, 346, 613, 811
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	384, 844
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	802
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	417, 840
BstDEI	CTNAG	2 cut(s)	525, 832
BstDSI	CCRYGG	2 cut(s)	115, 807
BstF5I	GGATG	1 cut(s)	642
BstFNI	CGCG	1 cut(s)	809
BstKTI	GATC	7 cut(s)	22, 268, 280, 340, 349, 616, 814
BstMBI	GATC	7 cut(s)	19, 265, 277, 337, 346, 613, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 526, 617
BstNI	CCWGG	2 cut(s)	384, 844
BstNSI	RCATGY	2 cut(s)	482, 774
BstSCI	CCNGG	4 cut(s)	171, 352, 382, 842
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	1 cut(s)	809
BstV1I	GCAGC	1 cut(s)	695
BstX2I	RGATCY	3 cut(s)	337, 346, 811
BstXI	CCANNNNNNTGG	1 cut(s)	411
BstYI	RGATCY	3 cut(s)	337, 346, 811
BsuRI	GGCC	1 cut(s)	842
BtgI	CCRYGG	2 cut(s)	115, 807
BtsCI	GGATG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	375, 411
Cac8I	GCNNGC	2 cut(s)	417, 840
Cfr13I	GGNCC	3 cut(s)	302, 386, 583
Cfr42I	CCGCGG	1 cut(s)	810
Csp6I	GTAC	5 cut(s)	272, 308, 536, 740, 850
CviAII	CATG	3 cut(s)	116, 479, 771
CviJI	RGCY	6 cut(s)	529, 611, 620, 708, 823, 842
CviKI_1	RGCY	6 cut(s)	529, 611, 620, 708, 823, 842
CviQI	GTAC	5 cut(s)	272, 308, 536, 740, 850
DdeI	CTNAG	2 cut(s)	525, 832
DpnI	GATC	7 cut(s)	21, 267, 279, 339, 348, 615, 813
DpnII	GATC	7 cut(s)	19, 265, 277, 337, 346, 613, 811
DraIII	CACNNNGTG	1 cut(s)	733
Eam1104I	CTCTTC	1 cut(s)	802
EarI	CTCTTC	1 cut(s)	802
EciI	GGCGGA	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	842
Eco47I	GGWCC	3 cut(s)	302, 386, 583
Eco57I	CTGAAG	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	382, 842
EcoT14I	CCWWGG	1 cut(s)	115
EcoT22I	ATGCAT	2 cut(s)	463, 484
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	119, 482, 774
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	3 cut(s)	115, 478, 770
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	2 cut(s)	709, 807
FokI	GGATG	1 cut(s)	649
Fsp4HI	GCNGC	2 cut(s)	709, 807
FspBI	CTAG	2 cut(s)	90, 101
GluI	GCNGC	2 cut(s)	709, 807
GsuI	CTGGAG	3 cut(s)	387, 500, 764
HaeIII	GGCC	1 cut(s)	842
HapII	CCGG	2 cut(s)	173, 354
Hin1II	CATG	3 cut(s)	119, 482, 774
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HinfI	GANTC	5 cut(s)	65, 86, 141, 332, 682
HpaII	CCGG	2 cut(s)	173, 354
HphI	GGTGA	3 cut(s)	502, 677, 691
Hpy166II	GTNNAC	2 cut(s)	56, 232
Hpy188I	TCNGA	7 cut(s)	40, 64, 76, 151, 265, 337, 671
Hpy188III	TCNNGA	2 cut(s)	101, 248
Hpy8I	GTNNAC	2 cut(s)	56, 232
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	232, 461, 482, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 526, 617
HpyF3I	CTNAG	2 cut(s)	525, 832
Hsp92II	CATG	3 cut(s)	119, 482, 774
Ksp22I	TGATCA	1 cut(s)	613
KspI	CCGCGG	1 cut(s)	810
Kzo9I	GATC	7 cut(s)	19, 265, 277, 337, 346, 613, 811
LmnI	GCTCC	1 cut(s)	745
Lsp1109I	GCAGC	1 cut(s)	695
LweI	GCATC	2 cut(s)	283, 448
MaeI	CTAG	2 cut(s)	90, 101
MaeIII	GTNAC	3 cut(s)	439, 683, 725
MalI	GATC	7 cut(s)	21, 267, 279, 339, 348, 615, 813
MboI	GATC	7 cut(s)	19, 265, 277, 337, 346, 613, 811
MboII	GAAGA	4 cut(s)	272, 458, 662, 789
MflI	RGATCY	3 cut(s)	337, 346, 811
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	1 cut(s)	70
MlyI	GAGTC	2 cut(s)	74, 691
MnlI	CCTC	9 cut(s)	145, 178, 405, 411, 438, 442, 524, 550, 775
Mph1103I	ATGCAT	2 cut(s)	463, 484
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	3 cut(s)	485, 567, 624
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	809
MspI	CCGG	2 cut(s)	173, 354
MspR9I	CCNGG	4 cut(s)	173, 354, 384, 844
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	2 cut(s)	384, 844
MvnI	CGCG	1 cut(s)	809
MwoI	GCNNNNNNNGC	3 cut(s)	488, 526, 617
NciI	CCSGG	2 cut(s)	173, 354
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	7 cut(s)	19, 265, 277, 337, 346, 613, 811
NlaIII	CATG	3 cut(s)	119, 482, 774
NlaIV	GGNNCC	2 cut(s)	303, 813
NmuCI	GTSAC	2 cut(s)	683, 725
NsiI	ATGCAT	2 cut(s)	463, 484
NspI	RCATGY	2 cut(s)	482, 774
NspV	TTCGAA	1 cut(s)	465
PceI	AGGCCT	1 cut(s)	842
PctI	GAATGC	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	86, 141, 332
PkrI	GCNGC	2 cut(s)	710, 808
PleI	GAGTC	2 cut(s)	73, 690
PpsI	GAGTC	2 cut(s)	73, 690
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	382, 842
PspGI	CCWGG	2 cut(s)	382, 842
PspN4I	GGNNCC	2 cut(s)	303, 813
PspPI	GGNCC	3 cut(s)	302, 386, 583
PspPPI	RGGWCCY	1 cut(s)	302
PsuI	RGATCY	3 cut(s)	337, 346, 811
RsaI	GTAC	5 cut(s)	273, 309, 537, 741, 851
RsaNI	GTAC	5 cut(s)	272, 308, 536, 740, 850
RseI	CAYNNNNRTG	1 cut(s)	594
SacII	CCGCGG	1 cut(s)	810
SaqAI	TTAA	3 cut(s)	485, 567, 624
SatI	GCNGC	2 cut(s)	709, 807
Sau3AI	GATC	7 cut(s)	19, 265, 277, 337, 346, 613, 811
Sau96I	GGNCC	3 cut(s)	302, 386, 583
SchI	GAGTC	2 cut(s)	74, 691
ScrFI	CCNGG	4 cut(s)	173, 354, 384, 844
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	2 cut(s)	283, 448
SfcI	CTRYAG	1 cut(s)	15
Sfr303I	CCGCGG	1 cut(s)	810
SfuI	TTCGAA	1 cut(s)	465
SgrBI	CCGCGG	1 cut(s)	810
SinI	GGWCC	3 cut(s)	302, 386, 583
SmiMI	CAYNNNNRTG	1 cut(s)	594
Sse9I	AATT	1 cut(s)	70
SseBI	AGGCCT	1 cut(s)	842
SsiI	CCGC	3 cut(s)	183, 807, 809
SspMI	CTAG	2 cut(s)	90, 101
StuI	AGGCCT	1 cut(s)	842
StyD4I	CCNGG	4 cut(s)	171, 352, 382, 842
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	123
TaqI	TCGA	6 cut(s)	68, 291, 434, 465, 475, 780
TasI	AATT	1 cut(s)	70
TatI	WGTACW	5 cut(s)	271, 307, 535, 739, 849
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	3 cut(s)	86, 141, 332
Tru1I	TTAA	3 cut(s)	485, 567, 624
Tru9I	TTAA	3 cut(s)	485, 567, 624
TscAI	CASTG	2 cut(s)	375, 411
TseFI	GTSAC	2 cut(s)	683, 725
TseI	GCWGC	1 cut(s)	708
Tsp45I	GTSAC	2 cut(s)	683, 725
TspDTI	ATGAA	3 cut(s)	553, 566, 742
TspRI	CASTG	2 cut(s)	375, 411
VneI	GTGCAC	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	302, 386, 583
XapI	RAATTY	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	100
XceI	RCATGY	2 cut(s)	482, 774
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	90, 101
Zsp2I	ATGCAT	2 cut(s)	463, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.