Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004470

Physical Location & Seq

Genomic Coordinates Forward (+)

37091558 .. 37099009

Gene Structure 7452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1279900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3546 bp

ATGCCGCTGGTGAGGTTTCAGGTGCGGAACGAGTACAGCTTGGGGCAGCCTCAGCTGTACAAGGAGGTGAACAGAGAAGATCCCAAAGCTGTGCTCGACGGCGTCGCCGTCTCCGGCCTCGTCGGGATCTTGCGCCAGTTGGGTGATCTTGCCGAGTTTGCAGCAGAGGTCTTTCATGGCTTGCAAGAGCAAGTGATGACTACAGCTTCTAGAAGCCATAAACTGATGGTTCGTGTGCAGCACATTGAAGCTGCAGTTCCTCCCCTCGAGAAGGCTGTACTTGCTCAAACAAGCCACATACATTTTGCTTACACCAGTGGTATAGAGTGGCATCCTCGTATTCGAAATGAGAAAAATCATTTCATCTACAATGACTTACCTCGTTTTATTATGGATTCATATGAAGGATGTTGGGATCGTCCACGGTTGGATTTACTGGACAAATTTGATACTGGTGGCCCAGGATCTTGTTTGAAGAGATATTCAGATCCAACCTTTTTCAAAAAAGCATCTGCTATCCCTGATGAAGAAAATGTTGAAAAAGTCCGAAGATCTAGGAAGGCTCAAAGAAGCAAGAAGAAAAGAGGATCACAACGTAAAGGAGATGTATTGCGTGGTGCATCAGCATCTAATCGCAGTAGCAGAATGCAATATATTTCTCCTATTGTAAATGGGCGAAGCTCATCTTCTCAAACTGCCTCCACAGCCGACATGGGATTGAAATCTGACCTGGGGGACAATTCCACTTCTTTTGATTCAAGAACTGAGTCGGGATATATTGAGTATGCTGCCCATCCAAGTTCCTCCATGCAAGGCGAAGAACACGAATCCAAGGAATCACCTACTTCTAAATTGGTGCAGCATGTTGATACTATTGATTCTGTCTCACCTGCTGATCAAACTGGATTTGTAGATGATAACTCTCCTGGAAGTTCATTACAGGACCAAGTTACCTCTGGTTCATCTTGTGTTAACTGGGATGAGAAAACAGAGATAGTGGATCCGAAATGTCAACAGAATAGTATAGATGAAACTCCAGAGATGCATCCCACAAAAGATAACTTGGATGCACATGAAGCTGGAGCTGGTAACTTTAGAATTGTTGAGCGAATGGATGCTCTCTTTGATGATGAAAATATTGTGGAATCAATCTCGAGCAGCAACCAGACTGATGAAATTGAAAGTGAACCAGACAATTTCATGGATGCACTTAACATCATTGAATCAGAATCTGAAACCGATCTTGATTGTCAAACAAAACGAGAAGTGGAACATGTTGCCTCTGTTGTCAATAATGAAGGACCATACGGTGTGCATGAGACTTCACGCGATTGTTTGGACGATGAAACTCCAATTTTTGAATCTCATACTTCAACGTCTTACATTTCCTCCGAAGTAGAAGTGCCGACAGATCTGCCAAGCTCAGCCTCGTCAGAGAGTCCTATACATAAGCAGGTGCCTCAGATAGACATGGAACCGTCTAATCCAAACCACGCTGTAGGCACCAATAGAGCTGACATTTTTGATGGTTCAAGGTTAGAATCTGTTAGTGGTGATTCAGTATCCTCTGGCTCTGGAACTACTAACTTGCAGGATAAGACCATAAGCAGTTTATATATTCCTCAAGAATCTCCTGCTGATGTTTCCAGGACCAGTTCAACATCTCCTTCGTCTGGAACTACTAACGATCAGGACAAGACCATAAGCAGTTTATGTGAGGCTCAAGAATCTCCTGCTGATGATTCCAGTAATAACTCAACACCCTCTGTCTCTGGCTCTGGAACTACTAGTGTGAAGGATAAGATCACAAGCAGTTTATGTGGGTCTCAAGAATCCCCTGCTGACATTTACAGGAATAATTCAATAAATTTCTGGACAAATGGTGGCCTATTAGGACTTCAGCCATCAAAACCTCCTGATTTCAGCATGTCAAGTCCTATAAGTCAAGATTCTGCTAACAGAAATCACACTGAGACAGTTGGTCTCTCAAATCATGCTTACAAGCATATAGTTGATGAGCATGAAAGCGAAGAAAGTCCGTTGGTTGAGAATGCTGGCAGTAATGATAAGGATTTGAGTTCTAAATGCTCCATATCATGCTCTGAGAATCAAGATGATGGCATCTCTTTCAAGAAAATACCCAACGGATTTTCACCCACTGAGTTGTATCCAAAACTTCGTAATATTGGTGATTCTCATACGATAGAACCTGGGACTGTGTTGCCAGTTGCTCCATATGGAAAGTCCACTTCCAATGAAGTGAATCAGGAGAAAGAGGAAAACTCTTCCTGGGTTTTTGGGCTTGGCCGTAGGTTACTTGTGAATGATTTTGGTAGAAAAATTGCACATGTCCATGATGACGGATCTGAGCCTACTAGTTATTCAGATGCTGGTGTACTGGACCGGAGAAATAAGCAGCAGAGAGTAGAGTACCAAGCATTTCCTGAGACATCTGTCAGAGAGCCGTTTGAGGATGGAATTGGTGTTGATTCATCTCCTTCTTCACCACCACTTGAACATATGAAAATATCTTTCCATCCCGTAGATGGCATTGAAACTTCCATACTCAAACTGAAATTATCTGATGGGAATCAAAGCCATGAAAGTGTAAGAGACATGTTTCAGTCATTTCAGTTGATCCCAGAACCTGCTGTTCCTCTGCATGAATTTGTTTCTGATTCTGACGGTGACACATTCTGTAGATCATCTCCATATATATCAGATGATTATCATAGCCATCTCTCTGATCTCTCTGAATCGAATTCTGAACAATGGGAATCTGGTGAAACTCTAGAAAGAAATAACCATGAACTATATGATGGTTTATGTAGAATCTCATTAGAGGAACTATATGATGGTTTATGTGGAATCTCATCAGAGGAACATATATCCACCTCCTCGATACTAGACGGAATATCCCATAATGCCACTTATGTTGACGGTGGAAGTAAAAGTGTGCACAATGAGAATGGTCTGGAACACTATTCTCTCTCTGATCCTCTACTTGATCTTCCAAGTTTTGATGCTTTAGAACCTGTACTTCAGCAAGAAGCAAAAGATGATTCAGGTCCAAAGGATCTCCCTGGTTTGAGATGTTCAGAGGATTATACACCAGGATCACCACCTCTCCCTCCAGTGGAATGGCGTGCTTCAAAACCATTTACAGTAGAAAAAGATGTATTCAAAGGTTTTAGGCATGCGTTAAATGCAGAAGTTTTGGGGTCTGTCACCCTCCAGCAACCTAAGCCAGCGCCAGTACAGCAACAACAAATGAATGAGGATTCCATTAAACCGCAAGACAAGGACCAGCACGTGAATGGACAGAAAGATACTGATCAGGATCTAAATGGCAAAGGGGCAGACGAAAAAGAAGATTTCCTGCAACAAATTAGAACAAAGTCATTCAACCTGAGACGCACAGTGCCAGCAAAGGCAGCCGCCACACCAGCACCTGCCGCCAATGTCAAAGTCACCGCAATTTTGGAGAAAGCAAATGCCATTCGCCAGGCTGTTGGGAGCGATGACGATACCTGGAGTGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1182

Amino Acids

129.54

Weight (kDa)

4.72

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29170 AT1G29170 AT1G29170 AT2G34150 AT2G34150 AT2G34150 AT2G34150 AT2G34150
fragaria_vesca	FvH4_3g07780 FvH4_3g07780 FvH4_3g07780 FvH4_3g07780
malus_domestica	MD00G1207000.v1.1 MD05G1300900.v1.1 MD05G1301000.v1.1 MD10G1279900.v1.1
prunus_persica	Prupe.4G061600_v2.0.a1 Prupe.4G061600_v2.0.a1
pyrus_communis	pycom05g27880 pycom10g23370
rosa_chinensis	RchiOBHm_Chr5g0010801
rosa_laevigata	RLG00000031781
rosa_multiflora	Rmu_sc0000109.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065580
rosa_rugosa	Rorug04G0452600 Rorug04G0452700
rosa_samantha	Rh5AG084800 Rh5BG079600 Rh5CG092300 Rh5DG079700
rosa_wichuraiana	Rw0G000540 Rw0G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	898, 1444, 3460
Acc36I	ACCTGC	4 cut(s)	898, 1444, 2656, 3460
AccB1I	GGYRCC	2 cut(s)	1456, 1502
AccII	CGCG	1 cut(s)	1329
AciI	CCGC	6 cut(s)	5, 25, 3293, 3438, 3456, 3474
AcoI	YGGCCR	1 cut(s)	2305
AcsI	RAATTY	4 cut(s)	443, 1867, 2666, 2761
AcuI	CTGAAG	2 cut(s)	1883, 3026
AcvI	CACGTG	1 cut(s)	3313
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	7 cut(s)	35, 59, 279, 2397, 2432, 3039, 3258
AfiI	CCNNNNNNNGG	4 cut(s)	271, 1673, 2546, 3136
AflIII	ACRYGT	3 cut(s)	1273, 2347, 2616
AhdI	GACNNNNNGTC	1 cut(s)	1980
AhlI	ACTAGT	2 cut(s)	1787, 2375
Alw21I	GWGCWC	2 cut(s)	96, 2961
Alw44I	GTGCAC	1 cut(s)	2957
AlwNI	CAGNNNCTG	4 cut(s)	1232, 2390, 2648, 3452
Ama87I	CYCGRG	2 cut(s)	266, 1153
AoxI	GGCC	4 cut(s)	115, 457, 1885, 2305
ApaLI	GTGCAC	1 cut(s)	2957
ApeKI	GCWGC	9 cut(s)	46, 161, 238, 251, 788, 859, 1158, 2416, 3434
ApoI	RAATTY	4 cut(s)	443, 1867, 2666, 2761
AspLEI	GCGC	2 cut(s)	135, 3253
AspS9I	GGNCC	7 cut(s)	458, 943, 1301, 1650, 2401, 3068, 3304
AsuII	TTCGAA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	266, 1153
AvaII	GGWCC	6 cut(s)	943, 1301, 1650, 2401, 3068, 3304
BaeGI	GKGCMC	1 cut(s)	2961
BamHI	GGATCC	1 cut(s)	1000
BanI	GGYRCC	2 cut(s)	1456, 1502
BbrPI	CACGTG	1 cut(s)	3313
Bbv12I	GWGCWC	2 cut(s)	96, 2961
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	9 cut(s)	58, 173, 238, 250, 775, 871, 1170, 2428, 3446
BceAI	ACGGC	4 cut(s)	92, 115, 2292, 2449
BcgI	CGANNNNNNTGC	2 cut(s)	1396, 1430
BciVI	GTATCC	2 cut(s)	1573, 2178
BclI	TGATCA	2 cut(s)	895, 3334
BcuI	ACTAGT	2 cut(s)	1787, 2375
BfaI	CTAG	6 cut(s)	210, 555, 1788, 2376, 2792, 2906
BfmI	CTRYAG	4 cut(s)	201, 252, 1497, 2698
BfoI	RGCGCY	1 cut(s)	3254
BfuAI	ACCTGC	4 cut(s)	898, 1444, 2656, 3460
BfuI	GTATCC	2 cut(s)	1573, 2178
BglII	AGATCT	2 cut(s)	551, 1411
BlpI	GCTNAGC	1 cut(s)	1423
Bme18I	GGWCC	6 cut(s)	943, 1301, 1650, 2401, 3068, 3304
BmeRI	GACNNNNNGTC	1 cut(s)	1980
BmeT110I	CYCGRG	2 cut(s)	266, 1153
BmgT120I	GGNCC	7 cut(s)	458, 943, 1301, 1650, 2401, 3068, 3304
BmiI	GGNNCC	4 cut(s)	1002, 1458, 1476, 1504
BmrI	ACTGGG	1 cut(s)	985
BmuI	ACTGGG	1 cut(s)	985
BoxI	GACNNNNGTC	1 cut(s)	2453
BplI	GAGNNNNNCTC	2 cut(s)	2267, 2299
BpmI	CTGGAG	4 cut(s)	1020, 1101, 3117, 3218
Bpu10I	CCTNAGC	2 cut(s)	51, 3243
Bpu1102I	GCTNAGC	1 cut(s)	1423
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	3 cut(s)	1608, 1707, 1812
BsaAI	YACGTR	1 cut(s)	3313
BsaBI	GATNNNNATC	5 cut(s)	721, 2589, 2727, 3333, 3339
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	2 cut(s)	1830, 1988
BsaJI	CCNNGG	7 cut(s)	422, 460, 730, 831, 2210, 2289, 3082
BsaWI	WCCGGW	1 cut(s)	2403
BsaXI	ACNNNNNCTCC	4 cut(s)	1373, 1403, 3111, 3141
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 1673, 2546, 3136
Bse8I	GATNNNNATC	5 cut(s)	721, 2589, 2727, 3333, 3339
BseDI	CCNNGG	7 cut(s)	422, 460, 730, 831, 2210, 2289, 3082
BseJI	GATNNNNATC	5 cut(s)	721, 2589, 2727, 3333, 3339
BseLI	CCNNNNNNNGG	4 cut(s)	271, 1673, 2546, 3136
BseRI	GAGGAG	1 cut(s)	2887
BseSI	GKGCMC	1 cut(s)	2961
BseXI	GCAGC	9 cut(s)	58, 173, 238, 250, 775, 871, 1170, 2428, 3446
BsgI	GTGCAG	2 cut(s)	257, 878
Bsh1236I	CGCG	1 cut(s)	1329
BshFI	GGCC	4 cut(s)	117, 459, 1887, 2307
BshNI	GGYRCC	2 cut(s)	1456, 1502
BsiHKAI	GWGCWC	2 cut(s)	96, 2961
BsiHKCI	CYCGRG	2 cut(s)	266, 1153
BsiSI	CCGG	2 cut(s)	114, 2404
BslFI	GGGAC	2 cut(s)	749, 2227
BslI	CCNNNNNNNGG	4 cut(s)	271, 1673, 2546, 3136
BsmBI	CGTCTC	2 cut(s)	115, 3406
BsmFI	GGGAC	2 cut(s)	749, 2227
BsmI	GAATGC	2 cut(s)	651, 2056
BsnI	GGCC	4 cut(s)	117, 459, 1887, 2307
Bso31I	GGTCTC	2 cut(s)	1830, 1988
BsoBI	CYCGRG	2 cut(s)	266, 1153
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	96, 2961
Bsp1407I	TGTACA	1 cut(s)	57
Bsp1720I	GCTNAGC	1 cut(s)	1423
BspACI	CCGC	6 cut(s)	5, 25, 3293, 3438, 3456, 3474
BspANI	GGCC	4 cut(s)	117, 459, 1887, 2307
BspFNI	CGCG	1 cut(s)	1329
BspLI	GGNNCC	4 cut(s)	1002, 1458, 1476, 1504
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	4 cut(s)	898, 1444, 2656, 3460
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	2 cut(s)	1456, 1502
BspTNI	GGTCTC	2 cut(s)	1830, 1988
BsrGI	TGTACA	1 cut(s)	57
BssECI	CCNNGG	7 cut(s)	422, 460, 730, 831, 2210, 2289, 3082
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	831
Bst4CI	ACNGT	9 cut(s)	426, 1310, 1479, 1978, 2218, 2687, 2942, 3166, 3421
Bst6I	CTCTTC	2 cut(s)	470, 2290
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	3313
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	6 cut(s)	182, 2056, 3147, 3198, 3249, 3426
BstDSI	CCRYGG	1 cut(s)	422
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	1329
BstH2I	RGCGCY	1 cut(s)	3254
BstHHI	GCGC	2 cut(s)	135, 3253
BstNSI	RCATGY	6 cut(s)	866, 1277, 1930, 2351, 2620, 3200
BstPAI	GACNNNNGTC	1 cut(s)	2453
BstSFI	CTRYAG	4 cut(s)	201, 252, 1497, 2698
BstSLI	GKGCMC	1 cut(s)	2961
BstUI	CGCG	1 cut(s)	1329
BstV1I	GCAGC	9 cut(s)	58, 173, 238, 250, 775, 871, 1170, 2428, 3446
BstXI	CCANNNNNNTGG	2 cut(s)	3141, 3512
BsuI	GTATCC	2 cut(s)	1573, 2178
BsuRI	GGCC	4 cut(s)	117, 459, 1887, 2307
BtgI	CCRYGG	1 cut(s)	422
BtgZI	GCGATG	1 cut(s)	3534
BtsIMutI	CAGTG	5 cut(s)	322, 1968, 2157, 3141, 3426
BveI	ACCTGC	4 cut(s)	898, 1444, 2656, 3460
Cac8I	GCNNGC	6 cut(s)	182, 2056, 3147, 3198, 3249, 3426
CaiI	CAGNNNCTG	4 cut(s)	1232, 2390, 2648, 3452
CfoI	GCGC	2 cut(s)	135, 3253
Cfr13I	GGNCC	7 cut(s)	458, 943, 1301, 1650, 2401, 3068, 3304
CseI	GACGC	2 cut(s)	91, 3423
Csp6I	GTAC	7 cut(s)	34, 58, 278, 2396, 2431, 3038, 3257
CspCI	CAANNNNNGTGG	4 cut(s)	733, 768, 2917, 2952
CviQI	GTAC	7 cut(s)	34, 58, 278, 2396, 2431, 3038, 3257
DriI	GACNNNNNGTC	1 cut(s)	1980
EaeI	YGGCCR	1 cut(s)	2305
Eam1104I	CTCTTC	2 cut(s)	470, 2290
Eam1105I	GACNNNNNGTC	1 cut(s)	1980
EarI	CTCTTC	2 cut(s)	470, 2290
Eco130I	CCWWGG	1 cut(s)	831
Eco31I	GGTCTC	2 cut(s)	1830, 1988
Eco47I	GGWCC	6 cut(s)	943, 1301, 1650, 2401, 3068, 3304
Eco57I	CTGAAG	2 cut(s)	1883, 3026
Eco72I	CACGTG	1 cut(s)	3313
Eco88I	CYCGRG	2 cut(s)	266, 1153
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	2761
EcoT14I	CCWWGG	1 cut(s)	831
EcoT22I	ATGCAT	1 cut(s)	1047
ErhI	CCWWGG	1 cut(s)	831
Esp3I	CGTCTC	2 cut(s)	115, 3406
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	2 cut(s)	749, 2227
FauNDI	CATATG	3 cut(s)	400, 2236, 2520
FbaI	TGATCA	2 cut(s)	895, 3334
FspBI	CTAG	6 cut(s)	210, 555, 1788, 2376, 2792, 2906
GlaI	GCGC	2 cut(s)	134, 3252
GsuI	CTGGAG	4 cut(s)	1020, 1101, 3117, 3218
HaeII	RGCGCY	1 cut(s)	3254
HaeIII	GGCC	4 cut(s)	117, 459, 1887, 2307
HapII	CCGG	2 cut(s)	114, 2404
HgaI	GACGC	2 cut(s)	91, 3423
HhaI	GCGC	2 cut(s)	135, 3253
Hin1I	GRCGYC	1 cut(s)	102
Hin6I	GCGC	2 cut(s)	133, 3251
HinP1I	GCGC	2 cut(s)	133, 3251
HincII	GTYRAC	3 cut(s)	973, 1013, 2938
HindII	GTYRAC	3 cut(s)	973, 1013, 2938
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	2 cut(s)	114, 2404
Hpy166II	GTNNAC	9 cut(s)	70, 422, 973, 1013, 1187, 2247, 2396, 2938, 2959
Hpy8I	GTNNAC	9 cut(s)	70, 422, 973, 1013, 1187, 2247, 2396, 2938, 2959
Hpy99I	CGWCG	3 cut(s)	101, 107, 125
HpyAV	CCTTC	7 cut(s)	265, 398, 553, 1292, 1677, 1789, 2508
HpyCH4III	ACNGT	9 cut(s)	426, 1310, 1479, 1978, 2218, 2687, 2942, 3166, 3421
HpyCH4IV	ACGT	3 cut(s)	595, 1376, 3312
HpySE526I	ACGT	3 cut(s)	595, 1376, 3312
Hsp92I	GRCGYC	1 cut(s)	102
HspAI	GCGC	2 cut(s)	133, 3251
Ksp22I	TGATCA	2 cut(s)	895, 3334
KspAI	GTTAAC	1 cut(s)	973
LmnI	GCTCC	4 cut(s)	1082, 2093, 2236, 3516
Lsp1109I	GCAGC	9 cut(s)	58, 173, 238, 250, 775, 871, 1170, 2428, 3446
MaeI	CTAG	6 cut(s)	210, 555, 1788, 2376, 2792, 2906
MaeII	ACGT	3 cut(s)	595, 1376, 3312
MaeIII	GTNAC	7 cut(s)	949, 1088, 2313, 2687, 3226, 3469, 3536
MhlI	GDGCHC	2 cut(s)	96, 2961
MlyI	GAGTC	2 cut(s)	776, 1447
MmeI	TCCRAC	2 cut(s)	408, 515
Mph1103I	ATGCAT	1 cut(s)	1047
MseI	TTAA	4 cut(s)	972, 1212, 3203, 3288
MslI	CAYNNNNRTG	3 cut(s)	2352, 2604, 3315
MspA1I	CMGCKG	2 cut(s)	7, 55
MspI	CCGG	2 cut(s)	114, 2404
Mva1269I	GAATGC	2 cut(s)	651, 2056
MvnI	CGCG	1 cut(s)	1329
NdeI	CATATG	3 cut(s)	400, 2236, 2520
NlaIV	GGNNCC	4 cut(s)	1002, 1458, 1476, 1504
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	4 cut(s)	2687, 3226, 3469, 3536
NsiI	ATGCAT	1 cut(s)	1047
NspI	RCATGY	6 cut(s)	866, 1277, 1930, 2351, 2620, 3200
NspV	TTCGAA	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	3200
PaeR7I	CTCGAG	2 cut(s)	266, 1153
PaqCI	CACCTGC	3 cut(s)	898, 1444, 3460
PciI	ACATGT	3 cut(s)	1273, 2347, 2616
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	2 cut(s)	651, 2056
PflFI	GACNNNGTC	1 cut(s)	101
PfoI	TCCNGGA	2 cut(s)	925, 1646
PleI	GAGTC	2 cut(s)	775, 1446
PmaCI	CACGTG	1 cut(s)	3313
PmlI	CACGTG	1 cut(s)	3313
PpsI	GAGTC	2 cut(s)	775, 1446
Ppu21I	YACGTR	1 cut(s)	3313
PscI	ACATGT	3 cut(s)	1273, 2347, 2616
PshAI	GACNNNNGTC	1 cut(s)	2453
PspCI	CACGTG	1 cut(s)	3313
PspN4I	GGNNCC	4 cut(s)	1002, 1458, 1476, 1504
PspPI	GGNCC	7 cut(s)	458, 943, 1301, 1650, 2401, 3068, 3304
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	4 cut(s)	1232, 2390, 2648, 3452
PsyI	GACNNNGTC	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	7 cut(s)	35, 59, 279, 2397, 2432, 3039, 3258
RsaNI	GTAC	7 cut(s)	34, 58, 278, 2396, 2431, 3038, 3257
RseI	CAYNNNNRTG	3 cut(s)	2352, 2604, 3315
SaqAI	TTAA	4 cut(s)	972, 1212, 3203, 3288
Sau96I	GGNCC	7 cut(s)	458, 943, 1301, 1650, 2401, 3068, 3304
SchI	GAGTC	2 cut(s)	776, 1447
SduI	GDGCHC	2 cut(s)	96, 2961
SfcI	CTRYAG	4 cut(s)	201, 252, 1497, 2698
Sfr274I	CTCGAG	2 cut(s)	266, 1153
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	6 cut(s)	943, 1301, 1650, 2401, 3068, 3304
SlaI	CTCGAG	2 cut(s)	266, 1153
SmiMI	CAYNNNNRTG	3 cut(s)	2352, 2604, 3315
SmlI	CTYRAG	5 cut(s)	266, 1153, 1623, 1722, 1827
SmoI	CTYRAG	5 cut(s)	266, 1153, 1623, 1722, 1827
SpeI	ACTAGT	2 cut(s)	1787, 2375
SphI	GCATGC	1 cut(s)	3200
SsiI	CCGC	6 cut(s)	5, 25, 3293, 3438, 3456, 3474
SspI	AATATT	2 cut(s)	1138, 2185
SspMI	CTAG	6 cut(s)	210, 555, 1788, 2376, 2792, 2906
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	9 cut(s)	426, 1310, 1479, 1978, 2218, 2687, 2942, 3166, 3421
TaiI	ACGT	3 cut(s)	598, 1379, 3315
TaqI	TCGA	6 cut(s)	96, 267, 343, 1154, 2759, 2900
TatI	WGTACW	6 cut(s)	33, 57, 277, 2395, 3037, 3256
TauI	GCSGC	3 cut(s)	7, 3440, 3458
Tru1I	TTAA	4 cut(s)	972, 1212, 3203, 3288
Tru9I	TTAA	4 cut(s)	972, 1212, 3203, 3288
TscAI	CASTG	5 cut(s)	322, 1975, 2164, 3141, 3426
TseFI	GTSAC	4 cut(s)	2687, 3226, 3469, 3536
TseI	GCWGC	9 cut(s)	46, 161, 238, 251, 788, 859, 1158, 2416, 3434
Tsp45I	GTSAC	4 cut(s)	2687, 3226, 3469, 3536
TspGWI	ACGGA	4 cut(s)	2028, 2160, 2376, 2925
TspRI	CASTG	5 cut(s)	322, 1975, 2164, 3141, 3426
Tth111I	GACNNNGTC	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	2957
VpaK11BI	GGWCC	6 cut(s)	943, 1301, 1650, 2401, 3068, 3304
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	4 cut(s)	443, 1867, 2666, 2761
XbaI	TCTAGA	2 cut(s)	209, 2791
XceI	RCATGY	6 cut(s)	866, 1277, 1930, 2351, 2620, 3200
XcmI	CCANNNNNNNNNTGG	4 cut(s)	709, 953, 2543, 3314
XhoI	CTCGAG	2 cut(s)	266, 1153
XspI	CTAG	6 cut(s)	210, 555, 1788, 2376, 2792, 2906
Zsp2I	ATGCAT	1 cut(s)	1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.