Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004470

Physical Location & Seq

Genomic Coordinates Forward (+)

87238458 .. 87245071

Gene Structure 6614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2943 bp

ATGGATTCGTATGAAGAATGTAGCGATCCTCCGCGTTTGCACTTGCTTGACAAATTTGATACTGGGGGTCCAGGATCTTGTTTAAAGAGATATTCAGATCCTACATTTTTCAAAAAAGCATCAGCTATCTCTGATGAAGCAAATGCTGAAAAAATCCAAAGAGATAGGAAGGCTCAAAGAAGCAAGAAAAAGAAAGGATCACAGCATAATGGAGATGTATCACGTTCTGCATCGATATCCAATCGCAGTAGCAGTATGCAACCTATTTCTTCTAATGTGAATCGGCAAAGCTCGCCTTCGCAAACTGTCTCCACAACTGACATGGCGGCATTAAAGTCTGACCTGGGAAACAATTCTAATTCTTTTGGTTCAAGAACTGAGTCAGGATATAATGAGTATGTTGCCCATTCAAGTTCCTCCCTGCAAGCCAAACAACAAGAATACAAGGAGTCCCCTACTTCTGAATCTGCGCATCATGACGATTCTCTATCTGTTTTGCATGATGGTGAAACTGTGTTTGTAGATGGTAACTCTCCCGGAAGTTCATTACAGGACCAAGTTACATCTGGTTCATCTTGTGGTAAATGGGATGAGAAGGCAGAAATAGTAGATCCTACAGGTCAACAGAAGTGTTTAGATGAAACTACAGAAACGCTCCCTACAATGGATGACTCGGATGCACATGAAGGGGGAGCTGGTCACATTAAGAGTATTCAGCAAAACGATTTCCTCTTTGATGGCGAAAATATTTTGGAGCCAACCTTGAGCAGGAACCAAATTGATGAAATTGAAAGTGAACCAGATGAACCAGATACTTTCATGGATGCACTTAACACCATTGAATCAGAATCCGAAAATGATCTTGATTGTCAAACAAAACGAGAAGTGAAACATGTCCCTACTTTTGTCAACAAGAAAGGACTGGATGCAGTGCATGATATTACCATGGATTGTTTGAATCCTCAAACTCCAAGGTTTGAAACTCATACTGCAACATCTCACAGTTCCCCAGAAAGAGAAACACCGGTGGATCTACCAAACTCAGCATCATTAGAAAGCCCTGTCCCTGAGCAGATCCCTCAAGTAGTTATGGAACCTTCTAATTCAAACGACTCTGTAGGCTCTGATAGAACTGAAAATCTTGATGATTCAAGGTTAGAAACTGTTAATTGTGATTCAGCATCCTCTGGCTCGGGAACTACTATTGTGCAGGATAACATCATAAGCAGTTTACGTGAGCCTCAAGACTCTCCTGCTGCCATTTCCAGGAATAATTCAATAAATTTCTGGACTAATGGTGGCATGTTAGGACTTGAGCCATCAAAACCTCCTGATTTCACCATGGCAAGTCCTGTAAATCCAGCTAGCAGTAGTACAGCTGAGACAATTGGTCTCGCAAATCATGCTTACAAGATTATAGTCGATGAGCATGAAATGGAACCAAGCATGTTGACTATGGATGATGGATGTAATGATAAAGGTCAAGAGGATGGTATCTCATCAGAGAAAATATCTAAGGGAGTTTCGCCTACGGAATTGTATACAAAGCTTGGAAATATGGATGATTGTGATAAGAGCAATGGATTTGGCCAAGCCATGGAGGATGGTTGGAAAAAAACCAACGCAATGGAACCTGGAATTGTGTTACCAGTTGCTCCATATACTAAATCTGCTTCCAATGACTTAAATCAGGAGAATGATGAAACCTCTTCTCTGGTTTTCGGACTTGGTCGTAGGTTACTTGAGAATGGTTTTGGTAGAAATGTATCGTATGACAAATTTGAGCCTGCTAGTTATTTGAATGCTGGTGAATTGGAGCAGAAAAGCGAGCACCAGAGTGTAGTGTACCAATCATTTCCTGATACAGCCTTCAAAGAGCAGTCTGAGGATGGATTTGCAGTTCATTCATCTCCTTCTTCACCACCACTTGAGCACATGAAGATATCTTTCCAACCCATAAATGGCATTGAAACTTCCAAACTAAAACTGAAATTATCTGATGGGAATCAAAGCCACGGAAGTGTAAGAGACACGTTTCAGTCATTCCAGCTGATCCCAGAAACTGCTATCCCTCTGCATGAATTTGGTTCTGATTCTGACGATGACACCTTCTGTCGATCATCTCCTTACATATCCGATGATTGTGTTAGCCATCACTCTGAGTCCAATTCTGAACAATGGGAGTCTGGTGAAACTCCGGAGAGAGACAACCATGAACTTTATGATGCCTTGCATGGAATCTCATCAGCGGAACACATTTCCAGCTCCCCAGAACTAGGGGAAATAGGCAGCAATGCCATTTATAGTGAAGGTGGAATCAAAAGTGTTCACTCTGAGAATGGTATGGTACAGTATCTCTCTGATCCCTTACTTGATCTTCCAAGCTTAGATGCTTTTAAACCTGTACTCCTGCAAGAACCAAAAGATGATTCTACACCAATGGATGTCCATGGTTTGAGATGTCCTGGGGAATCTACACCAGAACCACCACCTCTCCCTCCAGTGGAATGGTGCCTTTCAAAGCCTCAGTTTGATGCTACAGAAGAAAATCACGATCTATCTGAAGGTTTTAAACATGTACTTGATACAGACCTCTTGGGGTCTATCACCTTCCAGCAACCACCATTGAAGCAACAAGAAGTGAATGAAGAGCCTCTTTCTATTAAACCAAAAATCAAGCAGAACCAGCAGGTGAATGAACACAAAGAAGCTGATCAGGCTCTAAACAGCAAAGAGATAGACGAAAAGGACGATTTCTTACAACAAATCAGAACACAGTCATTCAACCTGAGACGCACAGTGACAGCAAAGGCAACAACTACGACACCAGGACCCGCTACCCATGTCAAAGTCACTGCAATTTTGGAGAAAGCAAATGCCATCCGTCAGGCTGTTGGGAGCGATGATGGGGATGATGATGATGACGATACCTGGAGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

No domains found.

Protein Analysis

980

Amino Acids

107.18

Weight (kDa)

4.52

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29170 AT1G29170 AT1G29170 AT2G34150 AT2G34150 AT2G34150 AT2G34150 AT2G34150
fragaria_vesca	FvH4_3g07780 FvH4_3g07780 FvH4_3g07780 FvH4_3g07780
malus_domestica	MD00G1207000.v1.1 MD05G1300900.v1.1 MD05G1301000.v1.1 MD10G1279900.v1.1
prunus_persica	Prupe.4G061600_v2.0.a1 Prupe.4G061600_v2.0.a1
pyrus_communis	pycom05g27880 pycom10g23370
rosa_chinensis	RchiOBHm_Chr5g0010801
rosa_laevigata	RLG00000031781
rosa_multiflora	Rmu_sc0000109.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065580
rosa_rugosa	Rorug04G0452600 Rorug04G0452700
rosa_samantha	Rh5AG084800 Rh5BG079600 Rh5CG092300 Rh5DG079700
rosa_wichuraiana	Rw0G000540 Rw0G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2680
Acc16I	TGCGCA	1 cut(s)	471
Acc36I	ACCTGC	1 cut(s)	2680
AccB1I	GGYRCC	1 cut(s)	2511
AccB7I	CCANNNNNTGG	1 cut(s)	1597
AccI	GTMKAC	1 cut(s)	1541
AccII	CGCG	1 cut(s)	34
AccIII	TCCGGA	1 cut(s)	2197
AciI	CCGC	4 cut(s)	32, 326, 2249, 2835
AclWI	GGATC	9 cut(s)	20, 82, 92, 205, 605, 1038, 1069, 2047, 2357
AcoI	YGGCCR	1 cut(s)	1588
AcsI	RAATTY	4 cut(s)	53, 1282, 1778, 2081
AcuI	CTGAAG	1 cut(s)	2583
AfaI	GTAC	6 cut(s)	1375, 1847, 2349, 2406, 2580, 2938
AfiI	CCNNNNNNNGG	7 cut(s)	664, 768, 1266, 1597, 1961, 2276, 2503
AflIII	ACRYGT	3 cut(s)	892, 2031, 2575
AgeI	ACCGGT	1 cut(s)	1024
AhdI	GACNNNNNGTC	1 cut(s)	1389
AjnI	CCWGG	7 cut(s)	70, 342, 1265, 1633, 2464, 2827, 2930
AjuI	GAANNNNNNNTTGG	2 cut(s)	2413, 2445
AleI	CACNNNNGTG	2 cut(s)	1836, 2019
AloI	GAACNNNNNNTCC	2 cut(s)	1884, 1916
Alw21I	GWGCWC	2 cut(s)	1833, 1935
Alw26I	GTCTC	6 cut(s)	313, 1376, 1397, 2022, 2199, 2785
AlwI	GGATC	9 cut(s)	20, 82, 92, 205, 605, 1038, 1069, 2047, 2357
AlwNI	CAGNNNCTG	1 cut(s)	2063
Ama87I	CYCGRG	1 cut(s)	1192
Aor13HI	TCCGGA	1 cut(s)	2197
AoxI	GGCC	1 cut(s)	1588
ApeKI	GCWGC	2 cut(s)	1256, 2289
ApoI	RAATTY	4 cut(s)	53, 1282, 1778, 2081
AsiGI	ACCGGT	1 cut(s)	1024
Asp700I	GAANNNNTTC	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	3 cut(s)	68, 553, 2831
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	7 cut(s)	518, 1330, 1820, 1911, 2201, 2599, 2704
AsuNHI	GCTAGC	1 cut(s)	1364
AvaI	CYCGRG	1 cut(s)	1192
AvaII	GGWCC	3 cut(s)	68, 553, 2831
BalI	TGGCCA	1 cut(s)	1590
BanI	GGYRCC	1 cut(s)	2511
Bbv12I	GWGCWC	2 cut(s)	1833, 1935
BbvI	GCAGC	2 cut(s)	1243, 2301
BciT130I	CCWGG	7 cut(s)	72, 344, 1267, 1635, 2466, 2829, 2932
BclI	TGATCA	1 cut(s)	2713
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	6 cut(s)	313, 1376, 1397, 2022, 2199, 2785
BfaI	CTAG	3 cut(s)	1365, 1791, 2276
BfmI	CTRYAG	4 cut(s)	615, 645, 1116, 2538
BfuAI	ACCTGC	1 cut(s)	2680
BisI	GCNGC	3 cut(s)	327, 1257, 2290
BlsI	GCNGC	3 cut(s)	328, 1258, 2291
BmcAI	AGTACT	1 cut(s)	2938
Bme1390I	CCNGG	8 cut(s)	72, 344, 537, 1267, 1635, 2466, 2829, 2932
Bme18I	GGWCC	3 cut(s)	68, 553, 2831
BmeRI	GACNNNNNGTC	1 cut(s)	1389
BmeT110I	CYCGRG	1 cut(s)	1192
BmgT120I	GGNCC	3 cut(s)	68, 553, 2831
BmiI	GGNNCC	8 cut(s)	69, 756, 773, 1095, 1440, 1632, 2513, 2833
BmrFI	CCNGG	8 cut(s)	72, 344, 537, 1267, 1635, 2466, 2829, 2932
BmrI	ACTGGG	1 cut(s)	72
BmtI	GCTAGC	1 cut(s)	1368
BmuI	ACTGGG	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	2484
Bpu10I	CCTNAGC	1 cut(s)	1068
BpuEI	CTTGAG	6 cut(s)	784, 1065, 1227, 1334, 1763, 1949
BpuMI	CCSGG	1 cut(s)	537
Bsa29I	ATCGAT	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	1235
BsaBI	GATNNNNATC	1 cut(s)	2004
BsaI	GGTCTC	1 cut(s)	1397
BsaJI	CCNNGG	8 cut(s)	343, 945, 971, 1341, 1596, 2014, 2449, 2465
BsaWI	WCCGGW	2 cut(s)	1024, 2197
BsaXI	ACNNNNNCTCC	4 cut(s)	2391, 2421, 2478, 2508
Bsc4I	CCNNNNNNNGG	7 cut(s)	664, 768, 1266, 1597, 1961, 2276, 2503
Bse118I	RCCGGY	1 cut(s)	1024
Bse1I	ACTGG	4 cut(s)	67, 927, 1649, 2501
Bse3DI	GCAATG	3 cut(s)	1585, 1632, 2299
Bse8I	GATNNNNATC	1 cut(s)	2004
BseAI	TCCGGA	1 cut(s)	2197
BseBI	CCWGG	7 cut(s)	72, 344, 1267, 1635, 2466, 2829, 2932
BseCI	ATCGAT	1 cut(s)	233
BseDI	CCNNGG	8 cut(s)	343, 945, 971, 1341, 1596, 2014, 2449, 2465
BseJI	GATNNNNATC	1 cut(s)	2004
BseLI	CCNNNNNNNGG	7 cut(s)	664, 768, 1266, 1597, 1961, 2276, 2503
BseMI	GCAATG	3 cut(s)	1585, 1632, 2299
BseMII	CTCAG	9 cut(s)	369, 1056, 1059, 1371, 1875, 2151, 2325, 2540, 2780
BseNI	ACTGG	4 cut(s)	67, 927, 1649, 2501
BseXI	GCAGC	2 cut(s)	1243, 2301
BsgI	GTGCAG	1 cut(s)	1229
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	1590
BshNI	GGYRCC	1 cut(s)	2511
BshTI	ACCGGT	1 cut(s)	1024
BshVI	ATCGAT	1 cut(s)	233
BsiHKAI	GWGCWC	2 cut(s)	1833, 1935
BsiHKCI	CYCGRG	1 cut(s)	1192
BsiSI	CCGG	3 cut(s)	537, 1025, 2198
BslFI	GGGAC	3 cut(s)	436, 881, 1049
BslI	CCNNNNNNNGG	7 cut(s)	664, 768, 1266, 1597, 1961, 2276, 2503
BsmAI	GTCTC	6 cut(s)	313, 1376, 1397, 2022, 2199, 2785
BsmBI	CGTCTC	1 cut(s)	2785
BsmFI	GGGAC	3 cut(s)	436, 881, 1049
BsmI	GAATGC	1 cut(s)	1807
BsnI	GGCC	1 cut(s)	1590
Bso31I	GGTCTC	1 cut(s)	1397
BsoBI	CYCGRG	1 cut(s)	1192
Bsp1286I	GDGCHC	2 cut(s)	1833, 1935
Bsp13I	TCCGGA	1 cut(s)	2197
Bsp19I	CCATGG	4 cut(s)	945, 1341, 1596, 2449
BspACI	CCGC	4 cut(s)	32, 326, 2249, 2835
BspANI	GGCC	1 cut(s)	1590
BspCNI	CTCAG	9 cut(s)	370, 1055, 1060, 1372, 1876, 2152, 2326, 2539, 2781
BspDI	ATCGAT	1 cut(s)	233
BspEI	TCCGGA	1 cut(s)	2197
BspFNI	CGCG	1 cut(s)	34
BspHI	TCATGA	1 cut(s)	475
BspLI	GGNNCC	8 cut(s)	69, 756, 773, 1095, 1440, 1632, 2513, 2833
BspMI	ACCTGC	1 cut(s)	2680
BspOI	GCTAGC	1 cut(s)	1368
BspPI	GGATC	9 cut(s)	20, 82, 92, 205, 605, 1038, 1069, 2047, 2357
BspQI	GCTCTTC	1 cut(s)	2643
BspT107I	GGYRCC	1 cut(s)	2511
BspTNI	GGTCTC	1 cut(s)	1397
BsrDI	GCAATG	3 cut(s)	1585, 1632, 2299
BsrFI	RCCGGY	1 cut(s)	1024
BsrI	ACTGG	4 cut(s)	67, 927, 1649, 2501
BssAI	RCCGGY	1 cut(s)	1024
BssECI	CCNNGG	8 cut(s)	343, 945, 971, 1341, 1596, 2014, 2449, 2465
BssNAI	GTATAC	1 cut(s)	1542
BssT1I	CCWWGG	5 cut(s)	945, 971, 1341, 1596, 2449
Bst1107I	GTATAC	1 cut(s)	1542
Bst2UI	CCWGG	7 cut(s)	72, 344, 1267, 1635, 2466, 2829, 2932
Bst4CI	ACNGT	7 cut(s)	307, 514, 1004, 1165, 2352, 2778, 2800
Bst6I	CTCTTC	2 cut(s)	1714, 2643
BstAPI	GCANNNNNTGC	1 cut(s)	1403
BstBAI	YACGTR	1 cut(s)	1235
BstC8I	GCNNGC	5 cut(s)	293, 426, 1366, 1788, 1829
BstDSI	CCRYGG	5 cut(s)	945, 1341, 1596, 2014, 2449
BstENI	CCTNNNNNAGG	1 cut(s)	766
BstFNI	CGCG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	472
BstMAI	GTCTC	6 cut(s)	313, 1376, 1397, 2022, 2199, 2785
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 1403, 2686, 2717
BstNI	CCWGG	7 cut(s)	72, 344, 1267, 1635, 2466, 2829, 2932
BstNSI	RCATGY	4 cut(s)	896, 1306, 1450, 2579
BstSCI	CCNGG	8 cut(s)	70, 342, 535, 1265, 1633, 2464, 2827, 2930
BstSFI	CTRYAG	4 cut(s)	615, 645, 1116, 2538
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	1243, 2301
BstX2I	RGATCY	5 cut(s)	74, 97, 610, 1030, 1074
BstXI	CCANNNNNNTGG	2 cut(s)	1627, 2508
BstYI	RGATCY	5 cut(s)	74, 97, 610, 1030, 1074
BstZ17I	GTATAC	1 cut(s)	1542
Bsu15I	ATCGAT	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	1590
BsuTUI	ATCGAT	1 cut(s)	233
BtgI	CCRYGG	5 cut(s)	945, 1341, 1596, 2014, 2449
BtgZI	GCGATG	1 cut(s)	2916
BtsI	GCAGTG	2 cut(s)	936, 2853
BtsIMutI	CAGTG	4 cut(s)	936, 2508, 2805, 2853
BveI	ACCTGC	1 cut(s)	2680
Cac8I	GCNNGC	5 cut(s)	293, 426, 1366, 1788, 1829
CaiI	CAGNNNCTG	1 cut(s)	2063
CciI	TCATGA	1 cut(s)	475
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	1024
Cfr13I	GGNCC	3 cut(s)	68, 553, 2831
ClaI	ATCGAT	1 cut(s)	233
CseI	GACGC	1 cut(s)	2802
Csp6I	GTAC	6 cut(s)	1374, 1846, 2348, 2405, 2579, 2937
CspAI	ACCGGT	1 cut(s)	1024
CviQI	GTAC	6 cut(s)	1374, 1846, 2348, 2405, 2579, 2937
DraI	TTTAAA	3 cut(s)	84, 2398, 2572
DriI	GACNNNNNGTC	1 cut(s)	1389
EaeI	YGGCCR	1 cut(s)	1588
Eam1104I	CTCTTC	2 cut(s)	1714, 2643
Eam1105I	GACNNNNNGTC	1 cut(s)	1389
EarI	CTCTTC	2 cut(s)	1714, 2643
Eco130I	CCWWGG	5 cut(s)	945, 971, 1341, 1596, 2449
Eco31I	GGTCTC	1 cut(s)	1397
Eco32I	GATATC	2 cut(s)	237, 1944
Eco47I	GGWCC	3 cut(s)	68, 553, 2831
Eco57I	CTGAAG	1 cut(s)	2583
Eco88I	CYCGRG	1 cut(s)	1192
EcoNI	CCTNNNNNAGG	1 cut(s)	766
EcoO109I	RGGNCCY	1 cut(s)	2831
EcoRII	CCWGG	7 cut(s)	70, 342, 1265, 1633, 2464, 2827, 2930
EcoRV	GATATC	2 cut(s)	237, 1944
EcoT14I	CCWWGG	5 cut(s)	945, 971, 1341, 1596, 2449
ErhI	CCWWGG	5 cut(s)	945, 971, 1341, 1596, 2449
Esp3I	CGTCTC	1 cut(s)	2785
FalI	AAGNNNNNCTT	4 cut(s)	280, 312, 2640, 2672
FaqI	GGGAC	3 cut(s)	436, 881, 1049
FauI	CCCGC	1 cut(s)	2842
FbaI	TGATCA	1 cut(s)	2713
FblI	GTMKAC	1 cut(s)	1541
Fnu4HI	GCNGC	3 cut(s)	327, 1257, 2290
Fsp4HI	GCNGC	3 cut(s)	327, 1257, 2290
FspBI	CTAG	3 cut(s)	1365, 1791, 2276
FspI	TGCGCA	1 cut(s)	471
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	3 cut(s)	327, 1257, 2290
GsuI	CTGGAG	1 cut(s)	2484
HaeIII	GGCC	1 cut(s)	1590
HapII	CCGG	3 cut(s)	537, 1025, 2198
HgaI	GACGC	1 cut(s)	2802
HhaI	GCGC	1 cut(s)	472
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HincII	GTYRAC	3 cut(s)	623, 910, 1452
HindII	GTYRAC	3 cut(s)	623, 910, 1452
HindIII	AAGCTT	2 cut(s)	1547, 2383
HpaII	CCGG	3 cut(s)	537, 1025, 2198
HphI	GGTGA	7 cut(s)	518, 1330, 1820, 1911, 2201, 2599, 2704
Hpy166II	GTNNAC	8 cut(s)	623, 797, 910, 1232, 1452, 1542, 1846, 2329
Hpy8I	GTNNAC	8 cut(s)	623, 797, 910, 1232, 1452, 1542, 1846, 2329
HpyCH4III	ACNGT	7 cut(s)	307, 514, 1004, 1165, 2352, 2778, 2800
HpyCH4IV	ACGT	3 cut(s)	223, 1234, 2033
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 1403, 2686, 2717
HpySE526I	ACGT	3 cut(s)	223, 1234, 2033
HspAI	GCGC	1 cut(s)	470
Kpn2I	TCCGGA	1 cut(s)	2197
Ksp22I	TGATCA	1 cut(s)	2713
LguI	GCTCTTC	1 cut(s)	2643
LmnI	GCTCC	7 cut(s)	660, 692, 754, 1660, 1816, 2270, 2898
Lsp1109I	GCAGC	2 cut(s)	1243, 2301
MaeI	CTAG	3 cut(s)	1365, 1791, 2276
MaeII	ACGT	3 cut(s)	223, 1234, 2033
MaeIII	GTNAC	7 cut(s)	527, 559, 698, 1644, 1737, 2800, 2851
MboII	GAAGA	8 cut(s)	26, 261, 1701, 1908, 1951, 2369, 2555, 2660
MfeI	CAATTG	1 cut(s)	1386
MflI	RGATCY	5 cut(s)	74, 97, 610, 1030, 1074
MhlI	GDGCHC	2 cut(s)	1833, 1935
MlsI	TGGCCA	1 cut(s)	1590
MluNI	TGGCCA	1 cut(s)	1590
MlyI	GAGTC	7 cut(s)	389, 458, 665, 1106, 1241, 2171, 2192
MmeI	TCCRAC	2 cut(s)	1589, 1975
Mox20I	TGGCCA	1 cut(s)	1590
MroI	TCCGGA	1 cut(s)	2197
MroXI	GAANNNNTTC	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	1590
MslI	CAYNNNNRTG	3 cut(s)	504, 1836, 2019
Msp20I	TGGCCA	1 cut(s)	1590
MspA1I	CMGCKG	3 cut(s)	1379, 2050, 2249
MspI	CCGG	3 cut(s)	537, 1025, 2198
MspR9I	CCNGG	8 cut(s)	72, 344, 537, 1267, 1635, 2466, 2829, 2932
MunI	CAATTG	1 cut(s)	1386
Mva1269I	GAATGC	1 cut(s)	1807
MvaI	CCWGG	7 cut(s)	72, 344, 1267, 1635, 2466, 2829, 2932
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	4 cut(s)	292, 1403, 2686, 2717
NciI	CCSGG	1 cut(s)	537
NcoI	CCATGG	4 cut(s)	945, 1341, 1596, 2449
NheI	GCTAGC	1 cut(s)	1364
NlaIV	GGNNCC	8 cut(s)	69, 756, 773, 1095, 1440, 1632, 2513, 2833
NmuCI	GTSAC	3 cut(s)	698, 2800, 2851
NsbI	TGCGCA	1 cut(s)	471
NspI	RCATGY	4 cut(s)	896, 1306, 1450, 2579
OliI	CACNNNNGTG	2 cut(s)	1836, 2019
PagI	TCATGA	1 cut(s)	475
PaqCI	CACCTGC	1 cut(s)	2680
PciI	ACATGT	2 cut(s)	892, 2575
PciSI	GCTCTTC	1 cut(s)	2643
PcsI	WCGNNNNNNNCGW	1 cut(s)	2748
PctI	GAATGC	1 cut(s)	1807
PdmI	GAANNNNTTC	1 cut(s)	352
PflFI	GACNNNGTC	1 cut(s)	1728
PflMI	CCANNNNNTGG	1 cut(s)	1597
PfoI	TCCNGGA	3 cut(s)	70, 535, 1265
PinAI	ACCGGT	1 cut(s)	1024
PkrI	GCNGC	3 cut(s)	328, 1258, 2291
PleI	GAGTC	7 cut(s)	388, 457, 665, 1106, 1241, 2170, 2191
PpsI	GAGTC	7 cut(s)	388, 457, 665, 1106, 1241, 2170, 2191
Ppu21I	YACGTR	1 cut(s)	1235
PpuMI	RGGWCCY	1 cut(s)	2831
PscI	ACATGT	2 cut(s)	892, 2575
Psp5II	RGGWCCY	1 cut(s)	2831
Psp6I	CCWGG	7 cut(s)	70, 342, 1265, 1633, 2464, 2827, 2930
PspGI	CCWGG	7 cut(s)	70, 342, 1265, 1633, 2464, 2827, 2930
PspN4I	GGNNCC	8 cut(s)	69, 756, 773, 1095, 1440, 1632, 2513, 2833
PspPI	GGNCC	3 cut(s)	68, 553, 2831
PspPPI	RGGWCCY	1 cut(s)	2831
PstNI	CAGNNNCTG	1 cut(s)	2063
PsuI	RGATCY	5 cut(s)	74, 97, 610, 1030, 1074
PsyI	GACNNNGTC	1 cut(s)	1728
PvuII	CAGCTG	2 cut(s)	1379, 2050
RsaI	GTAC	6 cut(s)	1375, 1847, 2349, 2406, 2580, 2938
RsaNI	GTAC	6 cut(s)	1374, 1846, 2348, 2405, 2579, 2937
RseI	CAYNNNNRTG	3 cut(s)	504, 1836, 2019
SapI	GCTCTTC	1 cut(s)	2643
SatI	GCNGC	3 cut(s)	327, 1257, 2290
Sau96I	GGNCC	3 cut(s)	68, 553, 2831
ScaI	AGTACT	1 cut(s)	2938
SchI	GAGTC	7 cut(s)	389, 458, 665, 1106, 1241, 2171, 2192
ScrFI	CCNGG	8 cut(s)	72, 344, 537, 1267, 1635, 2466, 2829, 2932
SduI	GDGCHC	2 cut(s)	1833, 1935
SfcI	CTRYAG	4 cut(s)	615, 645, 1116, 2538
SgrAI	CRCCGGYG	1 cut(s)	1024
SinI	GGWCC	3 cut(s)	68, 553, 2831
SmiMI	CAYNNNNRTG	3 cut(s)	504, 1836, 2019
SmlI	CTYRAG	6 cut(s)	763, 1080, 1242, 1313, 1742, 1928
SmoI	CTYRAG	6 cut(s)	763, 1080, 1242, 1313, 1742, 1928
SsiI	CCGC	4 cut(s)	32, 326, 2249, 2835
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	3 cut(s)	1365, 1791, 2276
StyD4I	CCNGG	8 cut(s)	70, 342, 535, 1265, 1633, 2464, 2827, 2930
StyI	CCWWGG	5 cut(s)	945, 971, 1341, 1596, 2449
TaaI	ACNGT	7 cut(s)	307, 514, 1004, 1165, 2352, 2778, 2800
TaiI	ACGT	3 cut(s)	226, 1237, 2036
TaqI	TCGA	3 cut(s)	233, 1422, 2116
TatI	WGTACW	4 cut(s)	1373, 2404, 2578, 2936
TauI	GCSGC	1 cut(s)	329
TscAI	CASTG	4 cut(s)	936, 2508, 2805, 2860
TseFI	GTSAC	3 cut(s)	698, 2800, 2851
TseI	GCWGC	2 cut(s)	1256, 2289
Tsp45I	GTSAC	3 cut(s)	698, 2800, 2851
TspGWI	ACGGA	3 cut(s)	1547, 2031, 2873
TspRI	CASTG	4 cut(s)	936, 2508, 2805, 2860
Tth111I	GACNNNGTC	1 cut(s)	1728
Van91I	CCANNNNNTGG	1 cut(s)	1597
VpaK11BI	GGWCC	3 cut(s)	68, 553, 2831
XagI	CCTNNNNNAGG	1 cut(s)	766
XapI	RAATTY	4 cut(s)	53, 1282, 1778, 2081
XceI	RCATGY	4 cut(s)	896, 1306, 1450, 2579
XcmI	CCANNNNNNNNNTGG	3 cut(s)	319, 563, 1958
XmiI	GTMKAC	1 cut(s)	1541
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	3 cut(s)	1365, 1791, 2276
ZrmI	AGTACT	1 cut(s)	2938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.