Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004470

Physical Location & Seq

Genomic Coordinates Forward (+)

60701954 .. 60703335

Gene Structure 1382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0452600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCATATAATTCTTTCACTGTAATTGATGTTAATGGAAAAGACGATCCATGGATGGATGTAGATATGACGAGCATTATTTCAAGCCACCATTGTAATTGGTCATTTGGGATTCAAGAGAACGCTAACACAGGATTCAACAAAGTTCTGCTTCCTGGATATACTTCACATTTTCCTTCAAGAGGATTCGTTTTTTCCAATGGTAACTATCACATTCGTTGTCAAACTGATCGGAGATGTAGGCCTATTTTCTCCAGTACGGTAGATGACATAAATCCAGATGACTCTGAAGATGAAAAGGATGCGAAGGAAAATTCCAAAGCTGAAGCTGGAGGGGGGAATAATGAAATGGTCAGAGAGAATCTTGAAAGACTTGTTGGTACAGATGACTCCAGCTTTAGTGGGATAGACCTGGCAACTCTTATTAGGAACAAGTATGGGAGGTCCTATGATGTTCAACTGATAAAGAAGGAGTTCCTGGGAAGAAACCTCTTGGCTATGAATGTGATGTGGAAGTACAGGGAGCAGAGATCCTTTCCACTGACTGAAGAAGAGTATCTATTGAGGCTTGATGATGTTGCAAACAACTTGAAGTGCTGGGGAGCTGTGTCACATATCAGAAACAGCCTAGCAACGGTGAAAGAGAGGCCTCGGATAGGAAAGGCTGTTAGCATTTTTATAGATATGGACGGGTCTGGAGGCCGTGCAAATGAATGGATTTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

27.56

Weight (kDa)

5.61

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3067	PF11267	137 - 240	3.6e-34	Domain of unknown function (DUF3067)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29170 AT1G29170 AT1G29170 AT2G34150 AT2G34150 AT2G34150 AT2G34150 AT2G34150
fragaria_vesca	FvH4_3g07780 FvH4_3g07780 FvH4_3g07780 FvH4_3g07780
malus_domestica	MD00G1207000.v1.1 MD05G1300900.v1.1 MD05G1301000.v1.1 MD10G1279900.v1.1
prunus_persica	Prupe.4G061600_v2.0.a1 Prupe.4G061600_v2.0.a1
pyrus_communis	pycom05g27880 pycom10g23370
rosa_chinensis	RchiOBHm_Chr5g0010801
rosa_laevigata	RLG00000031781
rosa_multiflora	Rmu_sc0000109.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065580
rosa_rugosa	Rorug04G0452600 Rorug04G0452700
rosa_samantha	Rh5AG084800 Rh5BG079600 Rh5CG092300 Rh5DG079700
rosa_wichuraiana	Rw0G000540 Rw0G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	41, 525
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	3 cut(s)	309, 345, 567
AfaI	GTAC	3 cut(s)	259, 382, 518
AfiI	CCNNNNNNNGG	3 cut(s)	182, 634, 656
AgsI	TTSAA	7 cut(s)	84, 116, 139, 180, 368, 458, 592
AjnI	CCWGG	3 cut(s)	154, 411, 477
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	4 cut(s)	323, 329, 396, 605
AluI	AGCT	4 cut(s)	323, 329, 396, 605
AlwI	GGATC	2 cut(s)	41, 525
AoxI	GGCC	3 cut(s)	242, 647, 700
ApoI	RAATTY	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	649
AvaII	GGWCC	1 cut(s)	444
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	687
BciT130I	CCWGG	3 cut(s)	156, 413, 479
BfaI	CTAG	1 cut(s)	629
Bme1390I	CCNGG	3 cut(s)	156, 413, 479
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	444
BmrFI	CCNGG	3 cut(s)	156, 413, 479
BmsI	GCATC	1 cut(s)	292
BpmI	CTGGAG	4 cut(s)	238, 351, 376, 717
BsaJI	CCNNGG	3 cut(s)	50, 478, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 634, 656
Bse1I	ACTGG	1 cut(s)	255
BseBI	CCWGG	3 cut(s)	156, 413, 479
BseDI	CCNNGG	3 cut(s)	50, 478, 650
BseGI	GGATG	3 cut(s)	60, 64, 307
BseLI	CCNNNNNNNGG	3 cut(s)	182, 634, 656
BseNI	ACTGG	1 cut(s)	255
BseYI	CCCAGC	1 cut(s)	597
BshFI	GGCC	3 cut(s)	244, 649, 702
BslI	CCNNNNNNNGG	3 cut(s)	182, 634, 656
BsnI	GGCC	3 cut(s)	244, 649, 702
Bsp143I	GATC	3 cut(s)	46, 229, 530
Bsp19I	CCATGG	1 cut(s)	50
BspANI	GGCC	3 cut(s)	244, 649, 702
BspPI	GGATC	2 cut(s)	41, 525
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	3 cut(s)	50, 478, 650
BssMI	GATC	3 cut(s)	46, 229, 530
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	3 cut(s)	156, 413, 479
Bst4CI	ACNGT	3 cut(s)	22, 262, 637
Bst6I	CTCTTC	1 cut(s)	546
BstDSI	CCRYGG	1 cut(s)	50
BstENI	CCTNNNNNAGG	2 cut(s)	180, 654
BstF5I	GGATG	3 cut(s)	60, 64, 307
BstKTI	GATC	3 cut(s)	49, 232, 533
BstMBI	GATC	3 cut(s)	46, 229, 530
BstNI	CCWGG	3 cut(s)	156, 413, 479
BstSCI	CCNGG	3 cut(s)	154, 411, 477
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	244, 649, 702
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	3 cut(s)	60, 64, 307
BtsIMutI	CAGTG	2 cut(s)	18, 539
Cfr13I	GGNCC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	258, 381, 517
CviAII	CATG	1 cut(s)	51
CviQI	GTAC	3 cut(s)	258, 381, 517
DpnI	GATC	3 cut(s)	48, 231, 532
DpnII	GATC	3 cut(s)	46, 229, 530
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	50
Eco147I	AGGCCT	2 cut(s)	244, 649
Eco47I	GGWCC	1 cut(s)	444
Eco57I	CTGAAG	3 cut(s)	309, 345, 567
EcoNI	CCTNNNNNAGG	2 cut(s)	180, 654
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRII	CCWGG	3 cut(s)	154, 411, 477
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	1 cut(s)	54
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	1 cut(s)	50
FokI	GGATG	3 cut(s)	67, 71, 314
FspBI	CTAG	1 cut(s)	629
GsaI	CCCAGC	1 cut(s)	601
GsuI	CTGGAG	4 cut(s)	238, 351, 376, 717
HaeIII	GGCC	3 cut(s)	244, 649, 702
Hin1II	CATG	1 cut(s)	54
HinfI	GANTC	6 cut(s)	112, 135, 186, 284, 361, 389
HphI	GGTGA	1 cut(s)	649
Hpy188I	TCNGA	5 cut(s)	234, 289, 356, 620, 654
Hpy188III	TCNNGA	5 cut(s)	116, 180, 278, 365, 696
HpyAV	CCTTC	3 cut(s)	186, 301, 463
HpyCH4III	ACNGT	3 cut(s)	22, 262, 637
HpyCH4V	TGCA	2 cut(s)	581, 707
Hsp92II	CATG	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	46, 229, 530
LmnI	GCTCC	2 cut(s)	523, 602
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	629
MaeIII	GTNAC	2 cut(s)	203, 609
MalI	GATC	3 cut(s)	48, 231, 532
MboI	GATC	3 cut(s)	46, 229, 530
MboII	GAAGA	4 cut(s)	302, 495, 560, 563
MflI	RGATCY	1 cut(s)	530
MluCI	AATT	4 cut(s)	10, 24, 97, 313
MlyI	GAGTC	2 cut(s)	278, 383
MnlI	CCTC	8 cut(s)	176, 326, 435, 500, 558, 639, 660, 692
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	1 cut(s)	33
MspR9I	CCNGG	3 cut(s)	156, 413, 479
MvaI	CCWGG	3 cut(s)	156, 413, 479
NcoI	CCATGG	1 cut(s)	50
NdeII	GATC	3 cut(s)	46, 229, 530
NlaIII	CATG	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	609
PceI	AGGCCT	2 cut(s)	244, 649
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	4 cut(s)	112, 135, 186, 361
PfoI	TCCNGGA	1 cut(s)	154
PleI	GAGTC	2 cut(s)	278, 383
PpsI	GAGTC	2 cut(s)	278, 383
PpuMI	RGGWCCY	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	444
Psp6I	CCWGG	3 cut(s)	154, 411, 477
PspFI	CCCAGC	1 cut(s)	597
PspGI	CCWGG	3 cut(s)	154, 411, 477
PspPI	GGNCC	1 cut(s)	444
PspPPI	RGGWCCY	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	3 cut(s)	259, 382, 518
RsaNI	GTAC	3 cut(s)	258, 381, 517
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	46, 229, 530
Sau96I	GGNCC	1 cut(s)	444
SchI	GAGTC	2 cut(s)	278, 383
ScrFI	CCNGG	3 cut(s)	156, 413, 479
SetI	ASST	7 cut(s)	325, 331, 398, 414, 446, 492, 607
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	444
Sse9I	AATT	4 cut(s)	10, 24, 97, 313
SseBI	AGGCCT	2 cut(s)	244, 649
SspMI	CTAG	1 cut(s)	629
StuI	AGGCCT	2 cut(s)	244, 649
StyD4I	CCNGG	3 cut(s)	154, 411, 477
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	3 cut(s)	22, 262, 637
TasI	AATT	4 cut(s)	10, 24, 97, 313
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	4 cut(s)	112, 135, 186, 361
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	2 cut(s)	25, 546
TseFI	GTSAC	1 cut(s)	609
Tsp45I	GTSAC	1 cut(s)	609
TspDTI	ATGAA	4 cut(s)	309, 360, 515, 726
TspRI	CASTG	2 cut(s)	25, 546
VpaK11BI	GGWCC	1 cut(s)	444
XagI	CCTNNNNNAGG	2 cut(s)	180, 654
XapI	RAATTY	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.