Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004470

Physical Location & Seq

Genomic Coordinates Forward (+)

25551026 .. 25558017

Gene Structure 6992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23370.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3537 bp

ATGCCGCTGGTGAGGTTTCAGGTGCGGAACGAGTACAGCTTGGGGCAGCCTCAGCTGTACAAGGAGGTGAACAGAGAAGATCCCAAAGCTGTGCTCGACGGCGTCGCCGTCTCCGGCCTCGTCGGGATCTTGCGCCAGTTGGGTGATCTTGCCGAGTTTGCAGCAGAGGTCTTTCATGGCTTGCAAGAGCAAGTGATGACTACAGCTTCTAGAAGCCATAAACTGATGGTTCGTGTGCAACACATTGAAGCTGCAGTTCCTCCCCTCGAGAAGGCTGTACTTGCTCAAACAAGCCACATACATTTTGCTTACACCAGTGGTATACAGTGGCATCCTCGTATTCGAAATGAGAAAAATCATTTCATCTACAATGACTTGCCTCGTTTTATCATGGATTCATATGAAGGATGTCGCGATCGTCCATGTTTGGATTTACTGGACAAATTTGATACTGGTGGCCCAGGATCTTGTTTGAAGAGATATTCAGATCCAACCTTTTTCAAAAAAGCATCTGCTATCCCTGATGAAGAAAATGTTGAAAAAATCCGAAGATCTAGGAAGGCTCAAAGAAGCAAGAAGAAAAGAGGATCACAACGTAAAGGAGATGTATTGCGTGGTGCATCAGCATCTAATCGCAGTAGCAGAATGCGATATATTTCTCCTATTGTAAATGGGCAAAGCTCGTCTTCTCAAACTGCCTCCACAGCCGACGTGGCATTGAAATCTGACCTGGGGGACAATTCCACTTCTTTTGATTCAAGAACTGAGTCGGGATATATTGAGTATGCTGCCCATCCAAGTTCCTCCATGCAAGGCGAAGAACATGAATCCAAGGAATCACCTACTTCTAAATTGGTGCAACATGTTGATACTATTGATTCTGTCTCACCTGCTGATCCAACTGGATTTGTAGATGATAACTCTCCTGGAAGTTCATTACAGGACCAAGTTACCTCTGGTTCATCTTGTGTTAACTGGGATGAGAAAACAGAGATAGTGGATCCGAAATGTCAACAGAATGGTATAGATGAAACTACAGAGACGCATCCAACAAAAGATAACTTGGATGCACATGAAGCAGGAGCTGGTAACTTTAGAATTATTGAGCGAATGGATGCCCTCTTTGATGATGAAAACATTGTGGAATCAATCTCGAGCGGGAACCAGACTGATGAAATTGAAAGTGAACCAGACAATTTCATGGATGCGCTTAACATCATTGAATCAGAATCTGAAACCGATCTTGATTGTCAAACAAAACGAGAAGTGGAACATATTGCCTCTGTTGTCAACAATGAAGGACCATACTGTGTGCATGAGACTACACGCGATTGTTCGGACGATCAAACTCCAATTTTTGAATCTCATACTTCAACGTCTTACATTTCCTCCGAAGTAGAAATGCTGACAGATCTGCCAAACTCAGCCTCGTTAGAGAGTCCCATACATAAGCAGGTGCCTCAGATAGACAGGGAACCTTCTAATCCAAACCACGCTGTAGGCACCAATAGAGCTGACATTTTTTATGGTTCAAGGTTAGAATCTGTTAGTGGTGATTCAGTATCCTCTGGCTCCGGAACTACTAACTTGCAGGATAAGACCATAAGCAGTATATATATTCCTCAAGAATCTCCTGCTGACGTTTCCAGGAGCAGTTCAACATCTCCTTCCTCTGGAACCGCTAACGATCAGGACAAGACCATAAGCAGTTTATGTGAGGCTCAAGAATCTCCTGCTGACGATTCCAGGAATAACTCAACACCCTCTGTCTCTGGCTCTGGAACTACTAGTGTGAAGGATAAGATCACAAGCAGTTTATGTGAGTCTCAAGAATCCCCTGCCGACATTTACAGGAATAATTCAATAAATTTCTGGACAAATGGTGGCCTATTAGGACTTCAGCCATCAAAACCTCCTGATTTCAGCATGTCAAGTCCTATAAGTCAAGATTCTGCTAACAGAAATCACACTGAGACAGTTGATCTCTCAAATCATGCTTACAAGCATATAGTCGATGAGCTTGAAAGCAAAGATAGTCCGTTGGTTGAGAATGCTGGCAGTAATGATAAGGATTTGAGTTCTAAATGCTCCATATCATGCTCTGAGAATCAAGATGATGGCATCTCTTTCAAGAAAATACCTAACGGATTTTCACCCACTGAGTTGTATCCAAAACTTCGTAATATTGGTGATTCTCATACGATAGAACCTGGGACTGTGTTGCCAGTTGCTCCGTCCACTTCCAATGAAGCGAATCAGGAGAAAGAGGAAAACTCTTCTTGGGTTTTTGGGCTTGGCCGTAGGTTACTTGTGAATGATTTTGGTCGAAAAATTGCACATGTCCATGATGACGGATCTGAGCCTACTAGTTATTCAGATGCTGGTGTACTGGACCAGAGAAATGAGCAGCAGAGAGTAGAGTACCAAGCATTTCCTGAGACATCCGTCAGAGAGCCATTTGAGGATGGAATTGGTGTTGATTCATCTCCTTCTTCACCACCACTTGAATATATGAAAATATCTTTCCATCCCGTAGATGGCATTGAAACTTCCATACTCAAACTGAAATTATCTGATGGAAATCAAAGCCATGAAAGTGCAAGAGACATGTTTCAGTCATTTCAGTTGATCCCAGAACCTGCTGTTCCTCTGCATGAATTTGTTTCTGATTCTGACGATGATACATTCTGTAGATCATCTGCATATATATCAGATGATTGTCATAGCCATCTCTCTGAATCGAATTCTGAACAATGGGAATCTGGTGAAACTCTAGAAAGAAATAACCATGAACTATATGATGGTTTATGTGGAATCTCATCAGAGGAACTATACGATGGTTTTTGTGGAATCTCATCAGAGGAACATATATCCACCTCCCCAGTACTAGACGGAATATCCCATAATGCCACTTATGGTGATGGTGGAAGTAAAAGTGTGCACACTGAGAATGGTCTGGAACATTCTCTCTCTGATCCTCTACTTGATCTTCCAAGTTTCGATGCTTTAGAACCTGTACTTCAGCAAGAAGCAAAAGATGATTCAGGTCCAAAGGATCTCCCTAGTTTGAGATGTTCAGAGGATTATACACCAGGATCACCACCTCTCCCTCCAGTGGAATGGCGTGCTTCAAAACCATCCTTGAATGTTACAGAAGAAAAATGTGTATTCAAAGGTTTTAGACATGCATTAAATGCAGAACTTTTGGGGTCTGTCACCCTCCAGCAACCTAAGCCAGCACCAATACAGCAACAACAAATGAATGAGGATTCCATTAAACCGCAAGACAAGCAGGACCACCACGTGAATGGACAGAAAGATGCTGATCAGGATCTAAATGGCAAAGGGATAGACGAAAAAGAAGATTTCCTGCAACAAATTAGAACAAAGTCATTCAACCTGAGACGCACAGTGCCAGCAAAGGCAGCCGCCACACCAGCACCTGCCGCCAATGTCAAAGTCACCGCAATTTTGGAGAAAGCAAACGCCATTCGCCAGGCTGTTGGGAGCGATGACGATACCTGGAGTGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0016020 GO:0016043 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1179

Amino Acids

129.12

Weight (kDa)

4.71

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29170 AT1G29170 AT1G29170 AT2G34150 AT2G34150 AT2G34150 AT2G34150 AT2G34150
fragaria_vesca	FvH4_3g07780 FvH4_3g07780 FvH4_3g07780 FvH4_3g07780
malus_domestica	MD00G1207000.v1.1 MD05G1300900.v1.1 MD05G1301000.v1.1 MD10G1279900.v1.1
prunus_persica	Prupe.4G061600_v2.0.a1 Prupe.4G061600_v2.0.a1
pyrus_communis	pycom05g27880 pycom10g23370
rosa_chinensis	RchiOBHm_Chr5g0010801
rosa_laevigata	RLG00000031781
rosa_multiflora	Rmu_sc0000109.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065580
rosa_rugosa	Rorug04G0452600 Rorug04G0452700
rosa_samantha	Rh5AG084800 Rh5BG079600 Rh5CG092300 Rh5DG079700
rosa_wichuraiana	Rw0G000540 Rw0G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	898, 1444, 3451
Acc36I	ACCTGC	4 cut(s)	898, 1444, 2647, 3451
AccB1I	GGYRCC	2 cut(s)	1456, 1502
AccBSI	CCGCTC	1 cut(s)	1158
AccI	GTMKAC	1 cut(s)	322
AccII	CGCG	2 cut(s)	414, 1329
AccIII	TCCGGA	1 cut(s)	1574
AciI	CCGC	8 cut(s)	5, 25, 1158, 1680, 3281, 3429, 3447, 3465
AcoI	YGGCCR	1 cut(s)	2296
AcsI	RAATTY	4 cut(s)	443, 1867, 2657, 2743
AcuI	CTGAAG	2 cut(s)	1883, 3005
AcvI	CACGTG	1 cut(s)	3304
AcyI	GRCGYC	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	3304
AfaI	GTAC	7 cut(s)	35, 59, 279, 2388, 2423, 2886, 3018
AfiI	CCNNNNNNNGG	4 cut(s)	271, 1673, 2537, 3115
AflIII	ACRYGT	3 cut(s)	862, 2338, 2607
AhlI	ACTAGT	2 cut(s)	1787, 2366
AjiI	CACGTC	1 cut(s)	712
AjnI	CCWGG	9 cut(s)	460, 729, 925, 1646, 1745, 2209, 3091, 3495, 3521
AluBI	AGCT	9 cut(s)	39, 55, 89, 206, 251, 681, 1085, 1514, 2020
AluI	AGCT	9 cut(s)	39, 55, 89, 206, 251, 681, 1085, 1514, 2020
Alw21I	GWGCWC	2 cut(s)	96, 2943
Alw44I	GTGCAC	1 cut(s)	2939
AlwNI	CAGNNNCTG	5 cut(s)	1085, 1232, 2381, 2639, 3443
Ama87I	CYCGRG	2 cut(s)	266, 1153
Aor13HI	TCCGGA	1 cut(s)	1574
AoxI	GGCC	4 cut(s)	115, 457, 1885, 2296
ApaLI	GTGCAC	1 cut(s)	2939
ApeKI	GCWGC	6 cut(s)	46, 161, 251, 788, 2407, 3425
ApoI	RAATTY	4 cut(s)	443, 1867, 2657, 2743
AspLEI	GCGC	2 cut(s)	135, 1210
AspS9I	GGNCC	6 cut(s)	458, 943, 1301, 2392, 3047, 3295
AsuII	TTCGAA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	266, 1153
AvaII	GGWCC	5 cut(s)	943, 1301, 2392, 3047, 3295
BaeGI	GKGCMC	1 cut(s)	2943
BamHI	GGATCC	1 cut(s)	1000
BanI	GGYRCC	2 cut(s)	1456, 1502
BbrPI	CACGTG	1 cut(s)	3304
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	2 cut(s)	96, 2943
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	6 cut(s)	58, 173, 238, 775, 2419, 3437
BceAI	ACGGC	3 cut(s)	92, 115, 2283
BciT130I	CCWGG	9 cut(s)	462, 731, 927, 1648, 1747, 2211, 3093, 3497, 3523
BciVI	GTATCC	2 cut(s)	1573, 2178
BclI	TGATCA	1 cut(s)	3325
BcuI	ACTAGT	2 cut(s)	1787, 2366
BfaI	CTAG	7 cut(s)	210, 555, 1788, 2367, 2774, 2888, 3063
BfmI	CTRYAG	5 cut(s)	201, 252, 1035, 1497, 2689
BfuAI	ACCTGC	4 cut(s)	898, 1444, 2647, 3451
BfuI	GTATCC	2 cut(s)	1573, 2178
BglI	GCCNNNNNGGC	1 cut(s)	713
BglII	AGATCT	2 cut(s)	551, 1411
BisI	GCNGC	9 cut(s)	5, 47, 162, 252, 789, 2408, 3426, 3429, 3447
BlsI	GCNGC	9 cut(s)	6, 48, 163, 253, 790, 2409, 3427, 3430, 3448
BmcAI	AGTACT	1 cut(s)	2886
Bme1390I	CCNGG	9 cut(s)	462, 731, 927, 1648, 1747, 2211, 3093, 3497, 3523
Bme18I	GGWCC	5 cut(s)	943, 1301, 2392, 3047, 3295
BmeT110I	CYCGRG	2 cut(s)	266, 1153
BmgBI	CACGTC	1 cut(s)	712
BmgT120I	GGNCC	6 cut(s)	458, 943, 1301, 2392, 3047, 3295
BmiI	GGNNCC	7 cut(s)	1002, 1163, 1458, 1476, 1504, 1573, 1678
BmrFI	CCNGG	9 cut(s)	462, 731, 927, 1648, 1747, 2211, 3093, 3497, 3523
BmrI	ACTGGG	2 cut(s)	985, 2876
BmuI	ACTGGG	2 cut(s)	985, 2876
BoxI	GACNNNNGTC	1 cut(s)	2444
BpiI	GAAGAC	1 cut(s)	678
BplI	GAGNNNNNCTC	2 cut(s)	2258, 2290
BpmI	CTGGAG	2 cut(s)	3096, 3206
Bpu10I	CCTNAGC	2 cut(s)	51, 3231
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	3 cut(s)	1608, 1707, 1812
BsaAI	YACGTR	1 cut(s)	3304
BsaBI	GATNNNNATC	3 cut(s)	2580, 3324, 3330
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	460, 730, 831, 2210
BsaWI	WCCGGW	1 cut(s)	1574
BsaXI	ACNNNNNCTCC	4 cut(s)	1373, 1403, 3090, 3120
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 1673, 2537, 3115
Bse8I	GATNNNNATC	3 cut(s)	2580, 3324, 3330
BseAI	TCCGGA	1 cut(s)	1574
BseBI	CCWGG	9 cut(s)	462, 731, 927, 1648, 1747, 2211, 3093, 3497, 3523
BseDI	CCNNGG	4 cut(s)	460, 730, 831, 2210
BseJI	GATNNNNATC	3 cut(s)	2580, 3324, 3330
BseLI	CCNNNNNNNGG	4 cut(s)	271, 1673, 2537, 3115
BseSI	GKGCMC	1 cut(s)	2943
BseXI	GCAGC	6 cut(s)	58, 173, 238, 775, 2419, 3437
Bsh1236I	CGCG	2 cut(s)	414, 1329
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	4 cut(s)	117, 459, 1887, 2298
BshNI	GGYRCC	2 cut(s)	1456, 1502
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	2 cut(s)	96, 2943
BsiHKCI	CYCGRG	2 cut(s)	266, 1153
BsiSI	CCGG	2 cut(s)	114, 1575
BslFI	GGGAC	3 cut(s)	749, 1425, 2227
BslI	CCNNNNNNNGG	4 cut(s)	271, 1673, 2537, 3115
BsmBI	CGTCTC	3 cut(s)	115, 1034, 3397
BsmFI	GGGAC	3 cut(s)	749, 1425, 2227
BsmI	GAATGC	2 cut(s)	651, 2056
BsnI	GGCC	4 cut(s)	117, 459, 1887, 2298
BsoBI	CYCGRG	2 cut(s)	266, 1153
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	96, 2943
Bsp13I	TCCGGA	1 cut(s)	1574
Bsp1407I	TGTACA	1 cut(s)	57
Bsp68I	TCGCGA	1 cut(s)	414
BspACI	CCGC	8 cut(s)	5, 25, 1158, 1680, 3281, 3429, 3447, 3465
BspANI	GGCC	4 cut(s)	117, 459, 1887, 2298
BspEI	TCCGGA	1 cut(s)	1574
BspFNI	CGCG	2 cut(s)	414, 1329
BspLI	GGNNCC	7 cut(s)	1002, 1163, 1458, 1476, 1504, 1573, 1678
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	4 cut(s)	898, 1444, 2647, 3451
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	2 cut(s)	1456, 1502
BsrBI	CCGCTC	1 cut(s)	1158
BsrGI	TGTACA	1 cut(s)	57
BssECI	CCNNGG	4 cut(s)	460, 730, 831, 2210
BssNAI	GTATAC	1 cut(s)	323
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	831
Bst1107I	GTATAC	1 cut(s)	323
Bst2UI	CCWGG	9 cut(s)	462, 731, 927, 1648, 1747, 2211, 3093, 3497, 3523
Bst4CI	ACNGT	5 cut(s)	327, 1310, 1978, 2218, 3412
Bst6I	CTCTTC	2 cut(s)	470, 2281
BstACI	GRCGYC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	3194
BstAUI	TGTACA	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	3304
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	5 cut(s)	182, 2056, 3126, 3237, 3417
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstFNI	CGCG	2 cut(s)	414, 1329
BstHHI	GCGC	2 cut(s)	135, 1210
BstMCI	CGRYCG	1 cut(s)	418
BstNI	CCWGG	9 cut(s)	462, 731, 927, 1648, 1747, 2211, 3093, 3497, 3523
BstNSI	RCATGY	5 cut(s)	866, 1930, 2342, 2611, 3188
BstPAI	GACNNNNGTC	1 cut(s)	2444
BstSCI	CCNGG	9 cut(s)	460, 729, 925, 1646, 1745, 2209, 3091, 3495, 3521
BstSFI	CTRYAG	5 cut(s)	201, 252, 1035, 1497, 2689
BstSLI	GKGCMC	1 cut(s)	2943
BstUI	CGCG	2 cut(s)	414, 1329
BstV1I	GCAGC	6 cut(s)	58, 173, 238, 775, 2419, 3437
BstV2I	GAAGAC	1 cut(s)	678
BstXI	CCANNNNNNTGG	3 cut(s)	3120, 3308, 3503
BstZ17I	GTATAC	1 cut(s)	323
BsuI	GTATCC	2 cut(s)	1573, 2178
BsuRI	GGCC	4 cut(s)	117, 459, 1887, 2298
BtgZI	GCGATG	1 cut(s)	3525
BtrI	CACGTC	1 cut(s)	712
BtsIMutI	CAGTG	7 cut(s)	322, 332, 1968, 2157, 2943, 3120, 3417
BtuMI	TCGCGA	1 cut(s)	414
BveI	ACCTGC	4 cut(s)	898, 1444, 2647, 3451
Cac8I	GCNNGC	5 cut(s)	182, 2056, 3126, 3237, 3417
CaiI	CAGNNNCTG	5 cut(s)	1085, 1232, 2381, 2639, 3443
CfoI	GCGC	2 cut(s)	135, 1210
Cfr13I	GGNCC	6 cut(s)	458, 943, 1301, 2392, 3047, 3295
CseI	GACGC	3 cut(s)	91, 1051, 3414
Csp6I	GTAC	7 cut(s)	34, 58, 278, 2387, 2422, 2885, 3017
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviQI	GTAC	7 cut(s)	34, 58, 278, 2387, 2422, 2885, 3017
DraIII	CACNNNGTG	1 cut(s)	3304
EaeI	YGGCCR	1 cut(s)	2296
Eam1104I	CTCTTC	2 cut(s)	470, 2281
EarI	CTCTTC	2 cut(s)	470, 2281
Eco130I	CCWWGG	1 cut(s)	831
Eco47I	GGWCC	5 cut(s)	943, 1301, 2392, 3047, 3295
Eco57I	CTGAAG	2 cut(s)	1883, 3005
Eco72I	CACGTG	1 cut(s)	3304
Eco88I	CYCGRG	2 cut(s)	266, 1153
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	2743
EcoRII	CCWGG	9 cut(s)	460, 729, 925, 1646, 1745, 2209, 3091, 3495, 3521
EcoT14I	CCWWGG	1 cut(s)	831
EcoT22I	ATGCAT	1 cut(s)	3190
ErhI	CCWWGG	1 cut(s)	831
Esp3I	CGTCTC	3 cut(s)	115, 1034, 3397
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	3 cut(s)	749, 1425, 2227
FauI	CCCGC	1 cut(s)	1151
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	3325
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	9 cut(s)	5, 47, 162, 252, 789, 2408, 3426, 3429, 3447
Fsp4HI	GCNGC	9 cut(s)	5, 47, 162, 252, 789, 2408, 3426, 3429, 3447
FspBI	CTAG	7 cut(s)	210, 555, 1788, 2367, 2774, 2888, 3063
GlaI	GCGC	2 cut(s)	134, 1209
GluI	GCNGC	9 cut(s)	5, 47, 162, 252, 789, 2408, 3426, 3429, 3447
GsuI	CTGGAG	2 cut(s)	3096, 3206
HaeIII	GGCC	4 cut(s)	117, 459, 1887, 2298
HapII	CCGG	2 cut(s)	114, 1575
HgaI	GACGC	3 cut(s)	91, 1051, 3414
HhaI	GCGC	2 cut(s)	135, 1210
Hin1I	GRCGYC	1 cut(s)	102
Hin6I	GCGC	2 cut(s)	133, 1208
HinP1I	GCGC	2 cut(s)	133, 1208
HincII	GTYRAC	3 cut(s)	973, 1013, 1291
HindII	GTYRAC	3 cut(s)	973, 1013, 1291
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	2 cut(s)	114, 1575
Hpy166II	GTNNAC	9 cut(s)	70, 323, 973, 1013, 1187, 1291, 2238, 2387, 2941
Hpy8I	GTNNAC	9 cut(s)	70, 323, 973, 1013, 1187, 1291, 2238, 2387, 2941
Hpy99I	CGWCG	4 cut(s)	101, 107, 125, 713
HpyAV	CCTTC	8 cut(s)	265, 398, 553, 1292, 1488, 1677, 1789, 2499
HpyCH4III	ACNGT	5 cut(s)	327, 1310, 1978, 2218, 3412
HpyCH4IV	ACGT	5 cut(s)	595, 711, 1376, 1641, 3303
HpySE526I	ACGT	5 cut(s)	595, 711, 1376, 1641, 3303
Hsp92I	GRCGYC	1 cut(s)	102
HspAI	GCGC	2 cut(s)	133, 1208
Kpn2I	TCCGGA	1 cut(s)	1574
Ksp22I	TGATCA	1 cut(s)	3325
KspAI	GTTAAC	1 cut(s)	973
LmnI	GCTCC	6 cut(s)	1082, 1577, 1650, 2093, 2236, 3507
Lsp1109I	GCAGC	6 cut(s)	58, 173, 238, 775, 2419, 3437
MaeI	CTAG	7 cut(s)	210, 555, 1788, 2367, 2774, 2888, 3063
MaeII	ACGT	5 cut(s)	595, 711, 1376, 1641, 3303
MaeIII	GTNAC	7 cut(s)	949, 1088, 2304, 3148, 3214, 3460, 3527
MbiI	CCGCTC	1 cut(s)	1158
MhlI	GDGCHC	2 cut(s)	96, 2943
MlyI	GAGTC	3 cut(s)	776, 1447, 1832
MmeI	TCCRAC	3 cut(s)	515, 923, 1073
Mph1103I	ATGCAT	1 cut(s)	3190
MroI	TCCGGA	1 cut(s)	1574
MseI	TTAA	4 cut(s)	972, 1212, 3191, 3276
MslI	CAYNNNNRTG	3 cut(s)	2343, 2595, 3306
MspA1I	CMGCKG	2 cut(s)	7, 55
MspI	CCGG	2 cut(s)	114, 1575
MspR9I	CCNGG	9 cut(s)	462, 731, 927, 1648, 1747, 2211, 3093, 3497, 3523
Mva1269I	GAATGC	2 cut(s)	651, 2056
MvaI	CCWGG	9 cut(s)	462, 731, 927, 1648, 1747, 2211, 3093, 3497, 3523
MvnI	CGCG	2 cut(s)	414, 1329
NdeI	CATATG	1 cut(s)	400
NlaIV	GGNNCC	7 cut(s)	1002, 1163, 1458, 1476, 1504, 1573, 1678
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	3 cut(s)	3214, 3460, 3527
NruI	TCGCGA	1 cut(s)	414
NsiI	ATGCAT	1 cut(s)	3190
NspI	RCATGY	5 cut(s)	866, 1930, 2342, 2611, 3188
NspV	TTCGAA	1 cut(s)	343
PaeR7I	CTCGAG	2 cut(s)	266, 1153
PaqCI	CACCTGC	3 cut(s)	898, 1444, 3451
PciI	ACATGT	3 cut(s)	862, 2338, 2607
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	2 cut(s)	651, 2056
PflFI	GACNNNGTC	1 cut(s)	101
PfoI	TCCNGGA	3 cut(s)	925, 1646, 1745
PkrI	GCNGC	9 cut(s)	6, 48, 163, 253, 790, 2409, 3427, 3430, 3448
Ple19I	CGATCG	1 cut(s)	418
PleI	GAGTC	3 cut(s)	775, 1446, 1831
PmaCI	CACGTG	1 cut(s)	3304
PmlI	CACGTG	1 cut(s)	3304
PpsI	GAGTC	3 cut(s)	775, 1446, 1831
Ppu21I	YACGTR	1 cut(s)	3304
PscI	ACATGT	3 cut(s)	862, 2338, 2607
PshAI	GACNNNNGTC	1 cut(s)	2444
Psp6I	CCWGG	9 cut(s)	460, 729, 925, 1646, 1745, 2209, 3091, 3495, 3521
PspCI	CACGTG	1 cut(s)	3304
PspGI	CCWGG	9 cut(s)	460, 729, 925, 1646, 1745, 2209, 3091, 3495, 3521
PspN4I	GGNNCC	7 cut(s)	1002, 1163, 1458, 1476, 1504, 1573, 1678
PspPI	GGNCC	6 cut(s)	458, 943, 1301, 2392, 3047, 3295
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	5 cut(s)	1085, 1232, 2381, 2639, 3443
PsyI	GACNNNGTC	1 cut(s)	101
PvuI	CGATCG	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	55
RruI	TCGCGA	1 cut(s)	414
RsaI	GTAC	7 cut(s)	35, 59, 279, 2388, 2423, 2886, 3018
RsaNI	GTAC	7 cut(s)	34, 58, 278, 2387, 2422, 2885, 3017
RseI	CAYNNNNRTG	3 cut(s)	2343, 2595, 3306
SaqAI	TTAA	4 cut(s)	972, 1212, 3191, 3276
SatI	GCNGC	9 cut(s)	5, 47, 162, 252, 789, 2408, 3426, 3429, 3447
Sau96I	GGNCC	6 cut(s)	458, 943, 1301, 2392, 3047, 3295
ScaI	AGTACT	1 cut(s)	2886
SchI	GAGTC	3 cut(s)	776, 1447, 1832
ScrFI	CCNGG	9 cut(s)	462, 731, 927, 1648, 1747, 2211, 3093, 3497, 3523
SduI	GDGCHC	2 cut(s)	96, 2943
SfcI	CTRYAG	5 cut(s)	201, 252, 1035, 1497, 2689
Sfr274I	CTCGAG	2 cut(s)	266, 1153
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	5 cut(s)	943, 1301, 2392, 3047, 3295
SlaI	CTCGAG	2 cut(s)	266, 1153
SmiMI	CAYNNNNRTG	3 cut(s)	2343, 2595, 3306
SmlI	CTYRAG	5 cut(s)	266, 1153, 1623, 1722, 1827
SmoI	CTYRAG	5 cut(s)	266, 1153, 1623, 1722, 1827
SpeI	ACTAGT	2 cut(s)	1787, 2366
SsiI	CCGC	8 cut(s)	5, 25, 1158, 1680, 3281, 3429, 3447, 3465
SspI	AATATT	1 cut(s)	2185
SspMI	CTAG	7 cut(s)	210, 555, 1788, 2367, 2774, 2888, 3063
StyD4I	CCNGG	9 cut(s)	460, 729, 925, 1646, 1745, 2209, 3091, 3495, 3521
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	5 cut(s)	327, 1310, 1978, 2218, 3412
TaiI	ACGT	5 cut(s)	598, 714, 1379, 1644, 3306
TaqI	TCGA	8 cut(s)	96, 267, 343, 1154, 2013, 2326, 2741, 3000
TatI	WGTACW	6 cut(s)	33, 57, 277, 2386, 2884, 3016
TauI	GCSGC	3 cut(s)	7, 3431, 3449
Tru1I	TTAA	4 cut(s)	972, 1212, 3191, 3276
Tru9I	TTAA	4 cut(s)	972, 1212, 3191, 3276
TscAI	CASTG	7 cut(s)	322, 332, 1975, 2164, 2950, 3120, 3417
TseFI	GTSAC	3 cut(s)	3214, 3460, 3527
TseI	GCWGC	6 cut(s)	46, 161, 251, 788, 2407, 3425
Tsp45I	GTSAC	3 cut(s)	3214, 3460, 3527
TspGWI	ACGGA	6 cut(s)	2028, 2160, 2223, 2367, 2434, 2907
TspRI	CASTG	7 cut(s)	322, 332, 1975, 2164, 2950, 3120, 3417
Tth111I	GACNNNGTC	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	2939
VpaK11BI	GGWCC	5 cut(s)	943, 1301, 2392, 3047, 3295
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	4 cut(s)	443, 1867, 2657, 2743
XbaI	TCTAGA	2 cut(s)	209, 2773
XceI	RCATGY	5 cut(s)	866, 1930, 2342, 2611, 3188
XcmI	CCANNNNNNNNNTGG	4 cut(s)	709, 953, 2534, 3305
XhoI	CTCGAG	2 cut(s)	266, 1153
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	7 cut(s)	210, 555, 1788, 2367, 2774, 2888, 3063
ZrmI	AGTACT	1 cut(s)	2886
Zsp2I	ATGCAT	1 cut(s)	3190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.