Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Reverse (-)

10286067 .. 10288103

Gene Structure 2037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGAGTCTCTGTCTCTCATCGTCCCGGATCGTTTCTCTTCACCACCAGAAACCCTTTCTCGCTCTTAAACTCCGGCCTCGTCCTTCAAATATCTCCGGTCTAGGTCACAGTACTAGTGTTGTTTGCTTCAATCCGTTAAGGTTATCGGCTGATCGTCAGCGAACCGCTACGGTGTCGGCGAGGGCTGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATGCTACTCCAATGTTGTCTGTTCATAATCTACAATGGATCTCGACAATTTCTTGCGTTGCATTGATGTTTGCAAGGGGTACTGGTATCCATAAGTCCTTTGTTGTTCCACTATTCGCACTACAAGCACCAATGGGCATTGTCTCCTGGATGAAGGGTGAATATGGCATCTGGGCAGCATTCTTGGCGCTTCTTACTCGACTGTTCTTCTCTTTTCCAGTTGAACTTGAGCTGCCCTTCATTGCTTTGCTTTTGGTGATTGTGGCGCCATATCAAGTTATGAGCATAAGAGGGAAACAGGAAGGTGCTATCCTTTCTTTAGCAATCTCTTGTTTTCTGGCTTTCCAGCATTTCTCAAGAGCAGGCACCTTGCAGAAAGCATTTGATCAGAATTCAGTTCTTGCCACTGTAGCCATAATTGGTGTCACAGTTGTATCGTTCCTTTTCTTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

226

Amino Acids

24.8

Weight (kDa)

10.56

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	49 - 217	1.4e-57	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	490, 590
AciI	CCGC	2 cut(s)	168, 196
AclWI	GGATC	3 cut(s)	38, 217, 272
AcsI	RAATTY	1 cut(s)	616
AcyI	GRCGYC	1 cut(s)	491
AfaI	GTAC	2 cut(s)	115, 307
AgsI	TTSAA	3 cut(s)	90, 133, 449
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	1 cut(s)	457
AluI	AGCT	1 cut(s)	457
Alw26I	GTCTC	3 cut(s)	14, 20, 373
AlwI	GGATC	3 cut(s)	38, 217, 272
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	401, 457
ApoI	RAATTY	1 cut(s)	616
AspLEI	GCGC	2 cut(s)	415, 493
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	3 cut(s)	35, 395, 493
BaeI	ACNNNNGTAYC	2 cut(s)	642, 675
BanI	GGYRCC	2 cut(s)	490, 590
BbvI	GCAGC	2 cut(s)	413, 444
BciT130I	CCWGG	1 cut(s)	373
BciVI	GTATCC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	14, 20, 373
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	2 cut(s)	104, 117
BfmI	CTRYAG	1 cut(s)	633
BfoI	RGCGCY	2 cut(s)	416, 494
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	3 cut(s)	197, 402, 458
BlsI	GCNGC	3 cut(s)	198, 403, 459
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	28, 373
BmiI	GGNNCC	2 cut(s)	492, 592
BmrFI	CCNGG	2 cut(s)	28, 373
BmsI	GCATC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	473, 565
BpuMI	CCSGG	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	313, 443
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	313, 443
BseXI	GCAGC	2 cut(s)	413, 444
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	2 cut(s)	490, 590
BsiSI	CCGG	3 cut(s)	28, 76, 99
BslFI	GGGAC	1 cut(s)	10
BsmAI	GTCTC	3 cut(s)	14, 20, 373
BsmFI	GGGAC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	79
Bsp143I	GATC	5 cut(s)	30, 154, 209, 264, 610
BspACI	CCGC	2 cut(s)	168, 196
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	492, 592
BspPI	GGATC	3 cut(s)	38, 217, 272
BspT107I	GGYRCC	2 cut(s)	490, 590
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	313, 443
BssMI	GATC	5 cut(s)	30, 154, 209, 264, 610
BssNI	GRCGYC	1 cut(s)	491
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	5 cut(s)	113, 175, 429, 634, 655
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	381
BstH2I	RGCGCY	2 cut(s)	416, 494
BstHHI	GCGC	2 cut(s)	415, 493
BstKTI	GATC	5 cut(s)	33, 157, 212, 267, 613
BstMAI	GTCTC	3 cut(s)	14, 20, 373
BstMBI	GATC	5 cut(s)	30, 154, 209, 264, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 410, 635
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	26, 371
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	2 cut(s)	413, 444
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	589
CfoI	GCGC	2 cut(s)	415, 493
Csp6I	GTAC	2 cut(s)	114, 306
CviJI	RGCY	6 cut(s)	79, 152, 188, 457, 566, 638
CviKI_1	RGCY	6 cut(s)	79, 152, 188, 457, 566, 638
CviQI	GTAC	2 cut(s)	114, 306
DdeI	CTNAG	1 cut(s)	189
DinI	GGCGCC	1 cut(s)	492
DpnI	GATC	5 cut(s)	32, 156, 211, 266, 612
DpnII	GATC	5 cut(s)	30, 154, 209, 264, 610
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	371
EgeI	GGCGCC	1 cut(s)	492
EheI	GGCGCC	1 cut(s)	492
FaiI	YATR	9 cut(s)	228, 252, 318, 390, 496, 506, 512, 641, 679
FaqI	GGGAC	1 cut(s)	10
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	3 cut(s)	197, 402, 458
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	3 cut(s)	197, 402, 458
FspBI	CTAG	2 cut(s)	104, 117
GlaI	GCGC	2 cut(s)	414, 492
GluI	GCNGC	3 cut(s)	197, 402, 458
HaeII	RGCGCY	2 cut(s)	416, 494
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	3 cut(s)	28, 76, 99
HhaI	GCGC	2 cut(s)	415, 493
Hin1I	GRCGYC	1 cut(s)	491
Hin6I	GCGC	2 cut(s)	413, 491
HinP1I	GCGC	2 cut(s)	413, 491
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	3 cut(s)	28, 76, 99
HphI	GGTGA	3 cut(s)	35, 395, 493
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	3 cut(s)	268, 582, 673
HpyAV	CCTTC	4 cut(s)	96, 373, 472, 521
HpyCH4III	ACNGT	5 cut(s)	113, 175, 429, 634, 655
HpyCH4V	TGCA	3 cut(s)	287, 299, 598
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 410, 635
HpyF3I	CTNAG	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	491
HspAI	GCGC	2 cut(s)	413, 491
KasI	GGCGCC	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	5 cut(s)	30, 154, 209, 264, 610
Lsp1109I	GCAGC	2 cut(s)	413, 444
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	2 cut(s)	104, 117
MaeIII	GTNAC	2 cut(s)	107, 649
MalI	GATC	5 cut(s)	32, 156, 211, 266, 612
MboI	GATC	5 cut(s)	30, 154, 209, 264, 610
MboII	GAAGA	2 cut(s)	32, 424
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	3 cut(s)	273, 616, 642
Mly113I	GGCGCC	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	4 cut(s)	90, 177, 200, 509
MseI	TTAA	2 cut(s)	69, 140
MspI	CCGG	3 cut(s)	28, 76, 99
MspR9I	CCNGG	2 cut(s)	28, 373
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	3 cut(s)	350, 410, 635
NarI	GGCGCC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	5 cut(s)	30, 154, 209, 264, 610
NlaIV	GGNNCC	2 cut(s)	492, 592
NmuCI	GTSAC	2 cut(s)	107, 649
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PctI	GAATGC	1 cut(s)	404
PfoI	TCCNGGA	2 cut(s)	26, 371
PkrI	GCNGC	3 cut(s)	198, 403, 459
PleI	GAGTC	1 cut(s)	15
PluTI	GGCGCC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	492, 592
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	2 cut(s)	115, 307
RsaNI	GTAC	2 cut(s)	114, 306
SaqAI	TTAA	2 cut(s)	69, 140
SatI	GCNGC	3 cut(s)	197, 402, 458
Sau3AI	GATC	5 cut(s)	30, 154, 209, 264, 610
ScaI	AGTACT	1 cut(s)	115
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	28, 373
SetI	ASST	5 cut(s)	109, 146, 459, 532, 596
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	633
SfoI	GGCGCC	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	452, 580
SmoI	CTYRAG	2 cut(s)	452, 580
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	3 cut(s)	273, 616, 642
SsiI	CCGC	2 cut(s)	168, 196
SspDI	GGCGCC	1 cut(s)	490
SspMI	CTAG	2 cut(s)	104, 117
StyD4I	CCNGG	2 cut(s)	26, 371
TaaI	ACNGT	5 cut(s)	113, 175, 429, 634, 655
TaqI	TCGA	3 cut(s)	212, 269, 424
TasI	AATT	3 cut(s)	273, 616, 642
TatI	WGTACW	1 cut(s)	113
TauI	GCSGC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	69, 140
Tru9I	TTAA	2 cut(s)	69, 140
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	2 cut(s)	107, 649
TseI	GCWGC	2 cut(s)	401, 457
Tsp45I	GTSAC	2 cut(s)	107, 649
TspDTI	ATGAA	3 cut(s)	239, 392, 454
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	637
XapI	RAATTY	1 cut(s)	616
XspI	CTAG	2 cut(s)	104, 117
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.