Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Forward (+)

15983712 .. 15984032

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1187800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAAGGGTAAGAGGAGGGGATCGAGTGCGATGTGTTACACTTACGCTGCACTTTTCTCTGTCAACACCCTCCAGTTTATCTCCACCATTTCTACTACGGTTCTGTTGCTTGCAAAAAGGACTGCTGTTCAGAAATCATTTCTTGTTCCCTTATTTCTTCTACAAGCGCCGACTGCCGTCATCTCATGGATTAAGGGTGAATATGGTATCTGGGCTGCATTCCTAGCCCTTCTTGTCCGTCCCTTCTTCTTTATTCCTAGTTTTATTCAATTTACCAGTAGGGATCAACCAATTTCTCGTAATCCACCATTTTTCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

107

Amino Acids

11.95

Weight (kDa)

10.72

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	10 - 87	1.4e-21	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	28, 291
AgsI	TTSAA	1 cut(s)	269
AlwI	GGATC	2 cut(s)	28, 291
ApeKI	GCWGC	2 cut(s)	47, 215
AspLEI	GCGC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	34, 202
BceAI	ACGGC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	224, 258
BfoI	RGCGCY	1 cut(s)	170
BisI	GCNGC	2 cut(s)	48, 216
BlsI	GCNGC	2 cut(s)	49, 217
BoxI	GACNNNNGTC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	73, 276
BseNI	ACTGG	2 cut(s)	73, 276
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	34, 202
BsgI	GTGCAG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	218
Bsp143I	GATC	2 cut(s)	20, 283
BspPI	GGATC	2 cut(s)	28, 291
BsrI	ACTGG	2 cut(s)	73, 276
BssMI	GATC	2 cut(s)	20, 283
Bst4CI	ACNGT	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	23, 286
BstMBI	GATC	2 cut(s)	20, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 224
BstPAI	GACNNNNGTC	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	34, 202
BtgZI	GCGATG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	169
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	2 cut(s)	215, 227
CviKI_1	RGCY	2 cut(s)	215, 227
DpnI	GATC	2 cut(s)	22, 285
DpnII	GATC	2 cut(s)	20, 283
FaeI	CATG	1 cut(s)	189
FaiI	YATR	2 cut(s)	187, 204
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	48, 216
Fsp4HI	GCNGC	2 cut(s)	48, 216
FspBI	CTAG	2 cut(s)	224, 258
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	2 cut(s)	48, 216
GsuI	CTGGAG	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	170
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	189
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	239, 253
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	50, 113, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 224
Hsp92II	CATG	1 cut(s)	189
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	20, 283
LpnPI	CCDG	3 cut(s)	86, 196, 289
Lsp1109I	GCAGC	2 cut(s)	34, 202
MaeI	CTAG	2 cut(s)	224, 258
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	2 cut(s)	22, 285
MboI	GATC	2 cut(s)	20, 283
MboII	GAAGA	2 cut(s)	149, 238
MluCI	AATT	2 cut(s)	269, 291
MnlI	CCTC	3 cut(s)	6, 9, 80
MseI	TTAA	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	173, 224
NdeII	GATC	2 cut(s)	20, 283
NlaIII	CATG	1 cut(s)	189
PctI	GAATGC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	49, 217
PshAI	GACNNNNGTC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	48, 216
Sau3AI	GATC	2 cut(s)	20, 283
Sse9I	AATT	2 cut(s)	269, 291
SspMI	CTAG	2 cut(s)	224, 258
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	269, 291
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	2 cut(s)	47, 215
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	227
XspI	CTAG	2 cut(s)	224, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.