Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Reverse (-)

3637018 .. 3638844

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGAGCCTCTCACTCTCCTCCACGTCATCACATGCTTTCTCTCTCCACCGCAGCAAGGTCGTCTCCGCCGTATCTCAGCCGCGGCTGGTCCAGCTTCAGGCCACCAAGATCTCCGCCTCGCTCCGTTACAATCCGCTCAGAGTTTCGATCAGCAGAAACGTTTGGATCAGTGGAAACGACGAGTTGAAGTTGATGAAGAACAAGAAGAAGAGCATCAGGAGGGGAATGAGTGCAGTTTGCTACGCTGCGCCTATCTCGGTCCATAATATCCAGTGGATCGCCACCATTTCTCTTGCGACCTTGATGTTTGCGAAAGGAACAGCTGTGCAGAAATCGTTTCTGGTGCCCTTGTTTGCTCTACAAGCACCGGGTAGCTTCATCACATGGATTAAGGGTGAATATGGACTCTGGGCCGCATTTCTAGCGCTTCTTGTTCGGCTCTTCTTCTACTATCCTGGGGAACTTGAATTGCCGTTAATAGCGTTACTTGTGGTGATTGTTGCTCCTTACCAAGTTATGAGCCTAAGGGGAAAACAAGAAGGTGCTATTGTTTCCCTAGTCATTGCAGGATATTTGGCTTTTCAGCATTTCTCACGCACTGGAAGCTTGAACCAATCATTTGACCGAGGTTCAATTGTTGCAACTTTAGCCATCATTTGTATCACTGTTCTGTCATGCTTGTTCCTGTTCTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

234

Amino Acids

25.69

Weight (kDa)

10.2

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	64 - 222	8.9e-50	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	85
AciI	CCGC	7 cut(s)	52, 69, 83, 85, 117, 137, 417
AclI	AACGTT	1 cut(s)	162
AclWI	GGATC	2 cut(s)	176, 287
AcuI	CTGAAG	1 cut(s)	83
AfeI	AGCGCT	1 cut(s)	429
AfiI	CCNNNNNNNGG	2 cut(s)	58, 100
AgsI	TTSAA	4 cut(s)	190, 470, 613, 636
AjiI	CACGTC	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	4 cut(s)	97, 326, 378, 609
AluI	AGCT	4 cut(s)	97, 326, 378, 609
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	176, 287
Aor51HI	AGCGCT	1 cut(s)	429
AoxI	GGCC	2 cut(s)	102, 414
ApeKI	GCWGC	2 cut(s)	54, 248
AspLEI	GCGC	2 cut(s)	253, 430
AspS9I	GGNCC	3 cut(s)	91, 262, 414
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	410, 508
AvaII	GGWCC	2 cut(s)	91, 262
AxyI	CCTNAGG	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	346
BbvI	GCAGC	2 cut(s)	66, 235
BccI	CCATC	1 cut(s)	662
BceAI	ACGGC	2 cut(s)	56, 460
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	425, 560
BfoI	RGCGCY	1 cut(s)	431
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	5 cut(s)	55, 83, 86, 249, 417
BlsI	GCNGC	5 cut(s)	56, 84, 87, 250, 418
Bme1390I	CCNGG	2 cut(s)	372, 459
Bme18I	GGWCC	2 cut(s)	91, 262
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	3 cut(s)	91, 262, 414
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	2 cut(s)	372, 459
BmsI	GCATC	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	83, 458, 628
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 100
Bse1I	ACTGG	2 cut(s)	274, 607
Bse21I	CCTNAGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	83, 458, 628
BseLI	CCNNNNNNNGG	2 cut(s)	58, 100
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	2 cut(s)	92, 154
BseNI	ACTGG	2 cut(s)	274, 607
BseRI	GAGGAG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	66, 235
BsgI	GTGCAG	2 cut(s)	255, 350
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	104, 416
BshNI	GGYRCC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	58, 100
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	104, 416
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	111, 150, 168, 279
BspACI	CCGC	7 cut(s)	52, 69, 83, 85, 117, 137, 417
BspANI	GGCC	2 cut(s)	104, 416
BspCNI	CTCAG	2 cut(s)	91, 153
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	2 cut(s)	176, 287
BspQI	GCTCTTC	2 cut(s)	206, 449
BspT107I	GGYRCC	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	274, 607
BssECI	CCNNGG	3 cut(s)	83, 458, 628
BssMI	GATC	4 cut(s)	111, 150, 168, 279
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	670
Bst6I	CTCTTC	2 cut(s)	206, 449
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	78, 140, 527
BstDSI	CCRYGG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	2 cut(s)	253, 430
BstKTI	GATC	4 cut(s)	114, 153, 171, 282
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	4 cut(s)	111, 150, 168, 279
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 365, 425, 606, 650
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	370, 457
BstSLI	GKGCMC	1 cut(s)	351
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	66, 235
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
Bsu36I	CCTNAGG	1 cut(s)	527
BsuRI	GGCC	2 cut(s)	104, 416
BtgI	CCRYGG	1 cut(s)	83
BtrI	CACGTC	1 cut(s)	27
BtsIMutI	CAGTG	4 cut(s)	178, 281, 600, 666
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	253, 430
Cfr13I	GGNCC	3 cut(s)	91, 262, 414
Cfr42I	CCGCGG	1 cut(s)	86
CviAII	CATG	3 cut(s)	35, 387, 678
DdeI	CTNAG	3 cut(s)	78, 140, 527
DpnI	GATC	4 cut(s)	113, 152, 170, 281
DpnII	GATC	4 cut(s)	111, 150, 168, 279
Eam1104I	CTCTTC	2 cut(s)	206, 449
EarI	CTCTTC	2 cut(s)	206, 449
EciI	GGCGGA	2 cut(s)	58, 106
Eco47I	GGWCC	2 cut(s)	91, 262
Eco47III	AGCGCT	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	3 cut(s)	38, 390, 681
FaiI	YATR	6 cut(s)	36, 267, 388, 405, 521, 679
FatI	CATG	3 cut(s)	34, 386, 677
Fnu4HI	GCNGC	5 cut(s)	55, 83, 86, 249, 417
Fsp4HI	GCNGC	5 cut(s)	55, 83, 86, 249, 417
FspBI	CTAG	2 cut(s)	425, 560
GlaI	GCGC	2 cut(s)	252, 429
GluI	GCNGC	5 cut(s)	55, 83, 86, 249, 417
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	104, 416
HapII	CCGG	1 cut(s)	371
HhaI	GCGC	2 cut(s)	253, 430
Hin1II	CATG	3 cut(s)	38, 390, 681
Hin6I	GCGC	2 cut(s)	251, 428
HinP1I	GCGC	2 cut(s)	251, 428
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	1 cut(s)	408
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	2 cut(s)	410, 508
Hpy188I	TCNGA	2 cut(s)	143, 701
Hpy188III	TCNNGA	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4IV	ACGT	2 cut(s)	26, 162
HpyCH4V	TGCA	4 cut(s)	236, 331, 569, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 365, 425, 606, 650
HpyF3I	CTNAG	3 cut(s)	78, 140, 527
HpySE526I	ACGT	2 cut(s)	26, 162
Hsp92II	CATG	3 cut(s)	38, 390, 681
HspAI	GCGC	2 cut(s)	251, 428
KspI	CCGCGG	1 cut(s)	86
Kzo9I	GATC	4 cut(s)	111, 150, 168, 279
LguI	GCTCTTC	2 cut(s)	206, 449
LmnI	GCTCC	2 cut(s)	129, 511
Lsp1109I	GCAGC	2 cut(s)	66, 235
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	425, 560
MaeII	ACGT	2 cut(s)	26, 162
MaeIII	GTNAC	2 cut(s)	128, 486
MalI	GATC	4 cut(s)	113, 152, 170, 281
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	4 cut(s)	111, 150, 168, 279
MboII	GAAGA	5 cut(s)	211, 220, 223, 436, 439
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	2 cut(s)	470, 636
MlyI	GAGTC	1 cut(s)	402
MnlI	CCTC	5 cut(s)	20, 31, 130, 216, 623
MseI	TTAA	2 cut(s)	393, 479
MspA1I	CMGCKG	2 cut(s)	85, 326
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	372, 459
MunI	CAATTG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	5 cut(s)	94, 365, 425, 606, 650
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	4 cut(s)	111, 150, 168, 279
NlaIII	CATG	3 cut(s)	38, 390, 681
NlaIV	GGNNCC	1 cut(s)	348
NspI	RCATGY	1 cut(s)	38
PciSI	GCTCTTC	2 cut(s)	206, 449
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PkrI	GCNGC	5 cut(s)	56, 84, 87, 250, 418
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Psp1406I	AACGTT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	3 cut(s)	91, 262, 414
PsuI	RGATCY	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	326
SacII	CCGCGG	1 cut(s)	86
SapI	GCTCTTC	2 cut(s)	206, 449
SaqAI	TTAA	2 cut(s)	393, 479
SatI	GCNGC	5 cut(s)	55, 83, 86, 249, 417
Sau3AI	GATC	4 cut(s)	111, 150, 168, 279
Sau96I	GGNCC	3 cut(s)	91, 262, 414
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	2 cut(s)	372, 459
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	225
Sfr303I	CCGCGG	1 cut(s)	86
SgrBI	CCGCGG	1 cut(s)	86
SinI	GGWCC	2 cut(s)	91, 262
Sse9I	AATT	2 cut(s)	470, 636
SsiI	CCGC	7 cut(s)	52, 69, 83, 85, 117, 137, 417
SspMI	CTAG	2 cut(s)	425, 560
StyD4I	CCNGG	2 cut(s)	370, 457
TaaI	ACNGT	1 cut(s)	670
TaiI	ACGT	2 cut(s)	29, 165
TaqI	TCGA	1 cut(s)	149
TaqII	GACCGA	2 cut(s)	250, 642
TasI	AATT	2 cut(s)	470, 636
TauI	GCSGC	3 cut(s)	85, 88, 419
Tru1I	TTAA	2 cut(s)	393, 479
Tru9I	TTAA	2 cut(s)	393, 479
TscAI	CASTG	4 cut(s)	178, 281, 607, 673
TseI	GCWGC	2 cut(s)	54, 248
TspDTI	ATGAA	2 cut(s)	212, 370
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	4 cut(s)	178, 281, 607, 673
VpaK11BI	GGWCC	2 cut(s)	91, 262
XceI	RCATGY	1 cut(s)	38
XspI	CTAG	2 cut(s)	425, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.