Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Reverse (-)

10288129 .. 10289666

Gene Structure 1538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29395.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCGAGTCTCTGTCTCTCATCGTCCCGGATCGTTTCTCTTCACCACCAGAAACCATTCCTCTCTCTTAAACTCCGGTCTCGTCCTTCAGATCTCTCCGGTCTAGGTCGCCACACGAGTCCTGTTTGCTTCAATCCGCTTAGGTTATCGGGTGATCGTCAGCGAACCGCTACGGTATCAACGAGGGTGGAGAAGCGGCGAAAGAGAGGATCGAGTGTGGTCTGTTATGCTGCTCCGATTTCTGCCAATAGTCTACAATGGATCTCCACCATTTCTTGCCTTGCATTGATGCTTGCAAGGGGTACTGGTATACATAAGTCAGTTGTTGTTCCACTATTCGCTCTCCACGCACCATCGAGCATCGTCGCCTGGATTAAGGGAGAGTATGGTGTATGGGCAGCATTCTTGGCGCTTATTGCTCGACTTTTCTTCACTTTTCCAGGTGAACTTGAGCTTCCATTCATCGCATTACTCTTGGTGATTGTGGCGCCATATCAAGTCATGAACATAAGAGGGAAGCAAGAAGGGGCAATCATAGCAATAGCAATATCTGGTTTTCTGGCTTTCCAACATTTCTCACGAGCAGGGAGCTTGGAGAAAGCATATGAGAAGGGTTCAGTTCTTGCCACTGTAGCCATTATTGGTGTCACAGTTGTATCGCTCCTTTTGTTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

225

Amino Acids

24.35

Weight (kDa)

10.47

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	49 - 216	1.1e-55	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	487
AccI	GTMKAC	2 cut(s)	253, 310
AciI	CCGC	3 cut(s)	137, 168, 196
AclWI	GGATC	3 cut(s)	38, 217, 269
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	368, 439
AluBI	AGCT	2 cut(s)	454, 591
AluI	AGCT	2 cut(s)	454, 591
Alw26I	GTCTC	3 cut(s)	14, 20, 84
AlwI	GGATC	3 cut(s)	38, 217, 269
ApeKI	GCWGC	2 cut(s)	230, 398
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	412, 490
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	4 cut(s)	35, 164, 455, 490
BaeI	ACNNNNGTAYC	2 cut(s)	639, 672
BanI	GGYRCC	1 cut(s)	487
BauI	CACGAG	2 cut(s)	115, 579
BbvI	GCAGC	2 cut(s)	217, 410
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	2 cut(s)	370, 441
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	14, 20, 84
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	630
BfoI	RGCGCY	2 cut(s)	413, 491
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	3 cut(s)	197, 231, 399
BlsI	GCNGC	3 cut(s)	198, 232, 400
Bme1390I	CCNGG	3 cut(s)	28, 370, 441
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	3 cut(s)	28, 370, 441
BmsI	GCATC	2 cut(s)	279, 369
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	84
BsaWI	WCCGGW	2 cut(s)	75, 98
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	370, 441
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	217, 410
BshNI	GGYRCC	1 cut(s)	487
BsiSI	CCGG	3 cut(s)	28, 76, 99
BslFI	GGGAC	1 cut(s)	10
BsmAI	GTCTC	3 cut(s)	14, 20, 84
BsmFI	GGGAC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	401
Bso31I	GGTCTC	1 cut(s)	84
Bsp143I	GATC	5 cut(s)	30, 91, 154, 209, 261
BspACI	CCGC	3 cut(s)	137, 168, 196
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	489
BspPI	GGATC	3 cut(s)	38, 217, 269
BspT107I	GGYRCC	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	310
BssMI	GATC	5 cut(s)	30, 91, 154, 209, 261
BssNAI	GTATAC	1 cut(s)	311
BssNI	GRCGYC	1 cut(s)	488
BssSI	CACGAG	2 cut(s)	115, 579
Bst1107I	GTATAC	1 cut(s)	311
Bst2BI	CACGAG	2 cut(s)	115, 579
Bst2UI	CCWGG	2 cut(s)	370, 441
Bst4CI	ACNGT	3 cut(s)	175, 631, 652
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	140
BstH2I	RGCGCY	2 cut(s)	413, 491
BstHHI	GCGC	2 cut(s)	412, 490
BstKTI	GATC	5 cut(s)	33, 94, 157, 212, 264
BstMAI	GTCTC	3 cut(s)	14, 20, 84
BstMBI	GATC	5 cut(s)	30, 91, 154, 209, 261
BstMWI	GCNNNNNNNGC	5 cut(s)	347, 407, 416, 536, 632
BstNI	CCWGG	2 cut(s)	370, 441
BstSCI	CCNGG	3 cut(s)	26, 368, 439
BstSFI	CTRYAG	1 cut(s)	630
BstV1I	GCAGC	2 cut(s)	217, 410
BstX2I	RGATCY	2 cut(s)	91, 261
BstYI	RGATCY	2 cut(s)	91, 261
BstZ17I	GTATAC	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	627
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	2 cut(s)	412, 490
Csp6I	GTAC	1 cut(s)	303
CspCI	CAANNNNNGTGG	2 cut(s)	168, 203
CviAII	CATG	1 cut(s)	502
CviJI	RGCY	4 cut(s)	454, 563, 591, 635
CviKI_1	RGCY	4 cut(s)	454, 563, 591, 635
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	1 cut(s)	140
DinI	GGCGCC	1 cut(s)	489
DpnI	GATC	5 cut(s)	32, 93, 156, 211, 263
DpnII	GATC	5 cut(s)	30, 91, 154, 209, 261
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	368, 439
EgeI	GGCGCC	1 cut(s)	489
EheI	GGCGCC	1 cut(s)	489
FaeI	CATG	1 cut(s)	505
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	1 cut(s)	501
FauNDI	CATATG	1 cut(s)	604
FblI	GTMKAC	2 cut(s)	253, 310
Fnu4HI	GCNGC	3 cut(s)	197, 231, 399
Fsp4HI	GCNGC	3 cut(s)	197, 231, 399
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	2 cut(s)	411, 489
GluI	GCNGC	3 cut(s)	197, 231, 399
HaeII	RGCGCY	2 cut(s)	413, 491
HapII	CCGG	3 cut(s)	28, 76, 99
HhaI	GCGC	2 cut(s)	412, 490
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	2 cut(s)	410, 488
HinP1I	GCGC	2 cut(s)	410, 488
HinfI	GANTC	2 cut(s)	7, 118
HpaII	CCGG	3 cut(s)	28, 76, 99
HphI	GGTGA	4 cut(s)	35, 164, 455, 490
Hpy166II	GTNNAC	3 cut(s)	254, 311, 446
Hpy188I	TCNGA	2 cut(s)	91, 237
Hpy188III	TCNNGA	2 cut(s)	502, 579
Hpy8I	GTNNAC	3 cut(s)	254, 311, 446
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	3 cut(s)	96, 518, 604
HpyCH4III	ACNGT	3 cut(s)	175, 631, 652
HpyCH4V	TGCA	2 cut(s)	284, 296
HpyF10VI	GCNNNNNNNGC	5 cut(s)	347, 407, 416, 536, 632
HpyF3I	CTNAG	1 cut(s)	140
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	2 cut(s)	410, 488
KasI	GGCGCC	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	30, 91, 154, 209, 261
LmnI	GCTCC	3 cut(s)	238, 588, 666
Lsp1109I	GCAGC	2 cut(s)	217, 410
LweI	GCATC	2 cut(s)	279, 369
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	5 cut(s)	32, 93, 156, 211, 263
MboI	GATC	5 cut(s)	30, 91, 154, 209, 261
MboII	GAAGA	2 cut(s)	32, 421
MflI	RGATCY	2 cut(s)	91, 261
Mly113I	GGCGCC	1 cut(s)	488
MlyI	GAGTC	2 cut(s)	16, 127
MmeI	TCCRAC	1 cut(s)	592
MnlI	CCTC	4 cut(s)	71, 177, 200, 506
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	2 cut(s)	69, 375
MspI	CCGG	3 cut(s)	28, 76, 99
MspR9I	CCNGG	3 cut(s)	28, 370, 441
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	2 cut(s)	370, 441
MwoI	GCNNNNNNNGC	5 cut(s)	347, 407, 416, 536, 632
NarI	GGCGCC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	5 cut(s)	30, 91, 154, 209, 261
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	646
PagI	TCATGA	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	198, 232, 400
PleI	GAGTC	2 cut(s)	15, 126
PluTI	GGCGCC	1 cut(s)	491
PpsI	GAGTC	2 cut(s)	15, 126
Psp6I	CCWGG	2 cut(s)	368, 439
PspGI	CCWGG	2 cut(s)	368, 439
PspN4I	GGNNCC	1 cut(s)	489
PsuI	RGATCY	2 cut(s)	91, 261
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	69, 375
SatI	GCNGC	3 cut(s)	197, 231, 399
Sau3AI	GATC	5 cut(s)	30, 91, 154, 209, 261
SchI	GAGTC	2 cut(s)	16, 127
ScrFI	CCNGG	3 cut(s)	28, 370, 441
SetI	ASST	5 cut(s)	109, 146, 445, 456, 593
SfaNI	GCATC	2 cut(s)	279, 369
SfcI	CTRYAG	1 cut(s)	630
SfoI	GGCGCC	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SsiI	CCGC	3 cut(s)	137, 168, 196
SspDI	GGCGCC	1 cut(s)	487
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	26, 368, 439
TaaI	ACNGT	3 cut(s)	175, 631, 652
TaqI	TCGA	3 cut(s)	212, 356, 421
TauI	GCSGC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	69, 375
Tru9I	TTAA	2 cut(s)	69, 375
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	2 cut(s)	230, 398
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	2 cut(s)	451, 518
TspRI	CASTG	1 cut(s)	634
XmiI	GTMKAC	2 cut(s)	253, 310
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.