Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Forward (+)

9932045 .. 9933566

Gene Structure 1522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGAGCCTGTCTCTGTCCTCCACGTCAGCGCAGACCTTCTCTCTCCACCGCGGCAGCACCAGCAAGGTCGTCTCCGCGGCGCCTCTGCTTCAGGCCAGGAAGAAGCTCTTTGGCGTTTTCCCCCGCGCCTCCAGCTCACTCCATTACCATCCACTCAGAGTTTCGATCGGTAGAAACGTTTCGATTAGTGGAAACGATGAGTTGAAGTTGATGAAGAAGACGACGAAGAAGATGAGGAGGGGAATGACTACAGTTTGTTATGCTTCACCTCTCAGAGTCGATACTATCCAGTGGATCGCCACCATCTCATCTGCGATCCTGATGTTTGCGAAAGGAACTGCCATGCAGAAATCGTTTCTTGTGCCCTTGTTTGCTCTACAAGCACCGGGTAGCGTCATCTCATGGATTAAGGGTGAATATGGCATCTGGGCCGCATTTTTGGCGGTTCTTGTTCGTCTCTTCTTCTTCATTCCTGGGGAACTTGAATTGCCATTAGTAGCATTTCTCCTGGTAATTGTTGCTCCACACCAAGTTATGAGCGTCAGGGGAAGACAAGAAGGTGCTATTATTTCCCTAGTCATTGCAGGATATTTGGCTTTTCAGCATTTCTCACGCATTGGAAGCTTGAACCAATCATTTGACCGAGGTTCAATTGTTGCAACCTTAGCCATCATTTGTATCACTGTTCTGTCATGCTTGCTCCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

238

Amino Acids

25.83

Weight (kDa)

10.54

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	68 - 228	1.1e-51	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	82
AccII	CGCG	3 cut(s)	54, 80, 129
AciI	CCGC	7 cut(s)	52, 54, 78, 80, 127, 435, 446
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	2 cut(s)	305, 313
AcuI	CTGAAG	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	208, 488, 631, 654
AjiI	CACGTC	1 cut(s)	27
AjnI	CCWGG	3 cut(s)	98, 475, 510
AluBI	AGCT	3 cut(s)	109, 138, 627
AluI	AGCT	3 cut(s)	109, 138, 627
Alw26I	GTCTC	3 cut(s)	18, 79, 464
AlwI	GGATC	2 cut(s)	305, 313
AoxI	GGCC	2 cut(s)	96, 432
ApeKI	GCWGC	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	3 cut(s)	34, 85, 131
AspS9I	GGNCC	1 cut(s)	432
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	261, 428
BaeGI	GKGCMC	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	82
BbsI	GAAGAC	2 cut(s)	227, 559
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	3 cut(s)	159, 314, 680
BciT130I	CCWGG	3 cut(s)	100, 477, 512
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	3 cut(s)	18, 79, 464
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	4 cut(s)	55, 58, 81, 435
BlsI	GCNGC	4 cut(s)	56, 59, 82, 436
Bme1390I	CCNGG	4 cut(s)	100, 390, 477, 512
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	4 cut(s)	100, 390, 477, 512
BmsI	GCATC	1 cut(s)	435
BpiI	GAAGAC	2 cut(s)	227, 559
BplI	GAGNNNNNCTC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	667
BpuMI	CCSGG	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	4 cut(s)	52, 78, 476, 646
Bse1I	ACTGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	3 cut(s)	100, 477, 512
BseDI	CCNNGG	4 cut(s)	52, 78, 476, 646
BseGI	GGATG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	172, 289
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	3 cut(s)	54, 80, 129
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	98, 434
BshNI	GGYRCC	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	389
BsmAI	GTCTC	3 cut(s)	18, 79, 464
BsmBI	CGTCTC	2 cut(s)	79, 464
BsnI	GGCC	2 cut(s)	98, 434
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	168, 297, 318
BspACI	CCGC	7 cut(s)	52, 54, 78, 80, 127, 435, 446
BspANI	GGCC	2 cut(s)	98, 434
BspCNI	CTCAG	2 cut(s)	171, 288
BspFNI	CGCG	3 cut(s)	54, 80, 129
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	305, 313
BspT107I	GGYRCC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	4 cut(s)	52, 78, 476, 646
BssMI	GATC	3 cut(s)	168, 297, 318
BssNI	GRCGYC	1 cut(s)	83
Bst2UI	CCWGG	3 cut(s)	100, 477, 512
Bst4CI	ACNGT	2 cut(s)	256, 688
Bst6I	CTCTTC	1 cut(s)	467
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	7, 701
BstDEI	CTNAG	3 cut(s)	158, 275, 667
BstDSI	CCRYGG	2 cut(s)	52, 78
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	3 cut(s)	54, 80, 129
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	3 cut(s)	34, 85, 131
BstKTI	GATC	3 cut(s)	171, 300, 321
BstMAI	GTCTC	3 cut(s)	18, 79, 464
BstMBI	GATC	3 cut(s)	168, 297, 318
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 135, 383, 443, 624, 668
BstNI	CCWGG	3 cut(s)	100, 477, 512
BstSCI	CCNGG	4 cut(s)	98, 388, 475, 510
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	369
BstUI	CGCG	3 cut(s)	54, 80, 129
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	2 cut(s)	227, 559
BsuRI	GGCC	2 cut(s)	98, 434
BtgI	CCRYGG	2 cut(s)	52, 78
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	299, 684
Cac8I	GCNNGC	2 cut(s)	7, 701
CfoI	GCGC	3 cut(s)	34, 85, 131
Cfr13I	GGNCC	1 cut(s)	432
Cfr42I	CCGCGG	2 cut(s)	55, 81
CseI	GACGC	2 cut(s)	385, 532
CviAII	CATG	3 cut(s)	346, 405, 696
CviJI	RGCY	8 cut(s)	9, 98, 109, 138, 434, 599, 627, 671
CviKI_1	RGCY	8 cut(s)	9, 98, 109, 138, 434, 599, 627, 671
DdeI	CTNAG	3 cut(s)	158, 275, 667
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	3 cut(s)	170, 299, 320
DpnII	GATC	3 cut(s)	168, 297, 318
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	3 cut(s)	98, 475, 510
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
Esp3I	CGTCTC	2 cut(s)	79, 464
FaeI	CATG	3 cut(s)	349, 408, 699
FaiI	YATR	6 cut(s)	264, 347, 406, 423, 539, 697
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	3 cut(s)	345, 404, 695
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	4 cut(s)	55, 58, 81, 435
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	4 cut(s)	55, 58, 81, 435
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	3 cut(s)	33, 84, 130
GluI	GCNGC	4 cut(s)	55, 58, 81, 435
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	98, 434
HapII	CCGG	1 cut(s)	389
HgaI	GACGC	2 cut(s)	385, 532
HhaI	GCGC	3 cut(s)	34, 85, 131
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	3 cut(s)	349, 408, 699
Hin6I	GCGC	3 cut(s)	32, 83, 129
HinP1I	GCGC	3 cut(s)	32, 83, 129
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	1 cut(s)	279
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	2 cut(s)	261, 428
Hpy188I	TCNGA	3 cut(s)	161, 278, 713
Hpy188III	TCNNGA	1 cut(s)	322
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	49, 554
HpyCH4III	ACNGT	2 cut(s)	256, 688
HpyCH4IV	ACGT	2 cut(s)	26, 180
HpyCH4V	TGCA	3 cut(s)	349, 587, 662
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 135, 383, 443, 624, 668
HpyF3I	CTNAG	3 cut(s)	158, 275, 667
HpySE526I	ACGT	2 cut(s)	26, 180
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	349, 408, 699
HspAI	GCGC	3 cut(s)	32, 83, 129
KasI	GGCGCC	1 cut(s)	82
KspI	CCGCGG	2 cut(s)	55, 81
Kzo9I	GATC	3 cut(s)	168, 297, 318
LmnI	GCTCC	2 cut(s)	529, 708
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	2 cut(s)	26, 180
MalI	GATC	3 cut(s)	170, 299, 320
MboI	GATC	3 cut(s)	168, 297, 318
MboII	GAAGA	9 cut(s)	115, 229, 232, 241, 244, 454, 457, 460, 564
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	3 cut(s)	488, 516, 654
Mly113I	GGCGCC	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	7 cut(s)	31, 96, 142, 231, 234, 282, 641
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	2 cut(s)	54, 80
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	4 cut(s)	100, 390, 477, 512
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	3 cut(s)	100, 477, 512
MvnI	CGCG	3 cut(s)	54, 80, 129
MwoI	GCNNNNNNNGC	6 cut(s)	63, 135, 383, 443, 624, 668
NarI	GGCGCC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	168, 297, 318
NlaIII	CATG	3 cut(s)	349, 408, 699
NlaIV	GGNNCC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	56, 59, 82, 436
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	287
PluTI	GGCGCC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	287
Psp1406I	AACGTT	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	98, 475, 510
PspGI	CCWGG	3 cut(s)	98, 475, 510
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	432
PvuI	CGATCG	1 cut(s)	171
SacII	CCGCGG	2 cut(s)	55, 81
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	4 cut(s)	55, 58, 81, 435
Sau3AI	GATC	3 cut(s)	168, 297, 318
Sau96I	GGNCC	1 cut(s)	432
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	4 cut(s)	100, 390, 477, 512
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	1 cut(s)	435
SfcI	CTRYAG	1 cut(s)	252
SfoI	GGCGCC	1 cut(s)	84
Sfr303I	CCGCGG	2 cut(s)	55, 81
SgrBI	CCGCGG	2 cut(s)	55, 81
Sse9I	AATT	3 cut(s)	488, 516, 654
SsiI	CCGC	7 cut(s)	52, 54, 78, 80, 127, 435, 446
SspDI	GGCGCC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	4 cut(s)	98, 388, 475, 510
TaaI	ACNGT	2 cut(s)	256, 688
TaiI	ACGT	2 cut(s)	29, 183
TaqI	TCGA	3 cut(s)	167, 185, 282
TaqII	GACCGA	1 cut(s)	660
TasI	AATT	3 cut(s)	488, 516, 654
TauI	GCSGC	3 cut(s)	57, 83, 437
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	299, 691
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	230, 460
TspRI	CASTG	2 cut(s)	299, 691
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.