Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Reverse (-)

85429244 .. 85431196

Gene Structure 1953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCGAGCCTATCACTGTCCTCCACGTCAGCGCAGACCTTCTCTCTCCCCCGCAGCAGCACAAGCAAGGTCGTCTCCGCCGCGCCTCTGCTTCAGGCCAGGAGGAAGAAGCTCTTTGGCGTTTTCCCCCGCGCCTCCAGCTCACTCCATTACCATCCACTCAGAAACGTTTCGATTAGTGGAAACGATGAGTTGAAGTTGATGAAGAAGAAGACGACGAAGAAGAAGATCAGGAGGGGAATGACTACAGTTTGTTATGCTTTACCTCTCAGAGTCGATACTATCCAGTGGATCGCCACCATCTCATCTGCGATCCTGATTTTTGCGAAAGGAACTGCTGTGCAGAAATCGTTTCTTGTGCCCTTGTTTGCTCTACAAGCACCGGGTCGCGTCATCTCATGGATTAAGGGTGAATATGGCATCTGGGCCGCATTTTTGGCGCTTCTTGTTCGTCTCTTCTTCTTCATTCCTGGGGAACTTGAATTGCCATTAGTAGCATTTCTCCTGGTGATTGTTGCTCCACACCAAGTTATGAGCCTCAGGGGAAGACAGGAAGGTGCTATTATTTCCCTAGTCATTGCAGGATATCTGGCTTTTCAGCATTTCTCACGCATTGGAAGCTTGAACCAATCATTTGACCGAGGTTCAATTGTTGCAACCTTAGCCATCATTTGTCTCACTGTTCTGTCATGCTTGCTCCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

235

Amino Acids

25.78

Weight (kDa)

10.73

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	71 - 226	3.2e-50	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	83, 132, 390
AciI	CCGC	5 cut(s)	52, 78, 81, 130, 429
AclI	AACGTT	1 cut(s)	168
AclWI	GGATC	2 cut(s)	299, 307
AcuI	CTGAAG	1 cut(s)	77
AgsI	TTSAA	4 cut(s)	196, 482, 625, 648
AjiI	CACGTC	1 cut(s)	27
AjnI	CCWGG	3 cut(s)	98, 469, 504
AluBI	AGCT	3 cut(s)	112, 141, 621
AluI	AGCT	3 cut(s)	112, 141, 621
Alw26I	GTCTC	3 cut(s)	79, 458, 680
AlwI	GGATC	2 cut(s)	299, 307
AoxI	GGCC	2 cut(s)	96, 426
ApeKI	GCWGC	2 cut(s)	54, 57
Asp700I	GAANNNNTTC	1 cut(s)	169
AspLEI	GCGC	4 cut(s)	34, 85, 134, 442
AspS9I	GGNCC	1 cut(s)	426
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	2 cut(s)	422, 520
AxyI	CCTNAGG	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	218, 553
BbvI	GCAGC	2 cut(s)	66, 69
BccI	CCATC	3 cut(s)	162, 308, 674
BciT130I	CCWGG	3 cut(s)	100, 471, 506
BcnI	CCSGG	1 cut(s)	384
BcoDI	GTCTC	3 cut(s)	79, 458, 680
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	443
BisI	GCNGC	4 cut(s)	55, 58, 81, 429
BlsI	GCNGC	4 cut(s)	56, 59, 82, 430
Bme1390I	CCNGG	4 cut(s)	100, 384, 471, 506
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	426
BmrFI	CCNGG	4 cut(s)	100, 384, 471, 506
BmsI	GCATC	1 cut(s)	429
BpiI	GAAGAC	2 cut(s)	218, 553
BpmI	CTGGAG	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	661
BpuMI	CCSGG	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	470, 640
Bse1I	ACTGG	1 cut(s)	286
Bse21I	CCTNAGG	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	3 cut(s)	100, 471, 506
BseDI	CCNNGG	2 cut(s)	470, 640
BseGI	GGATG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	3 cut(s)	175, 283, 553
BseNI	ACTGG	1 cut(s)	286
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	66, 69
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	3 cut(s)	83, 132, 390
BshFI	GGCC	2 cut(s)	98, 428
BsiSI	CCGG	1 cut(s)	383
BsmAI	GTCTC	3 cut(s)	79, 458, 680
BsmBI	CGTCTC	2 cut(s)	79, 458
BsnI	GGCC	2 cut(s)	98, 428
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	228, 291, 312
BspACI	CCGC	5 cut(s)	52, 78, 81, 130, 429
BspANI	GGCC	2 cut(s)	98, 428
BspCNI	CTCAG	3 cut(s)	174, 282, 552
BspFNI	CGCG	3 cut(s)	83, 132, 390
BspPI	GGATC	2 cut(s)	299, 307
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	470, 640
BssMI	GATC	3 cut(s)	228, 291, 312
Bst2UI	CCWGG	3 cut(s)	100, 471, 506
Bst4CI	ACNGT	3 cut(s)	18, 250, 682
Bst6I	CTCTTC	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	7, 695
BstDEI	CTNAG	4 cut(s)	161, 269, 539, 661
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	3 cut(s)	83, 132, 390
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	4 cut(s)	34, 85, 134, 442
BstKTI	GATC	3 cut(s)	231, 294, 315
BstMAI	GTCTC	3 cut(s)	79, 458, 680
BstMBI	GATC	3 cut(s)	228, 291, 312
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 138, 377, 437, 618, 662
BstNI	CCWGG	3 cut(s)	100, 471, 506
BstSCI	CCNGG	4 cut(s)	98, 382, 469, 504
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	363
BstUI	CGCG	3 cut(s)	83, 132, 390
BstV1I	GCAGC	2 cut(s)	66, 69
BstV2I	GAAGAC	2 cut(s)	218, 553
Bsu36I	CCTNAGG	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	98, 428
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	3 cut(s)	14, 293, 678
Cac8I	GCNNGC	2 cut(s)	7, 695
CfoI	GCGC	4 cut(s)	34, 85, 134, 442
Cfr13I	GGNCC	1 cut(s)	426
CseI	GACGC	1 cut(s)	379
CviAII	CATG	2 cut(s)	399, 690
CviJI	RGCY	9 cut(s)	9, 98, 112, 141, 428, 537, 593, 621, 665
CviKI_1	RGCY	9 cut(s)	9, 98, 112, 141, 428, 537, 593, 621, 665
DdeI	CTNAG	4 cut(s)	161, 269, 539, 661
DpnI	GATC	3 cut(s)	230, 293, 314
DpnII	GATC	3 cut(s)	228, 291, 312
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EciI	GGCGGA	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	77
Eco81I	CCTNAGG	1 cut(s)	539
EcoRII	CCWGG	3 cut(s)	98, 469, 504
EcoRV	GATATC	1 cut(s)	587
Esp3I	CGTCTC	2 cut(s)	79, 458
FaeI	CATG	2 cut(s)	402, 693
FaiI	YATR	5 cut(s)	258, 400, 417, 533, 691
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	2 cut(s)	398, 689
FauI	CCCGC	2 cut(s)	59, 137
Fnu4HI	GCNGC	4 cut(s)	55, 58, 81, 429
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	4 cut(s)	55, 58, 81, 429
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	4 cut(s)	33, 84, 133, 441
GluI	GCNGC	4 cut(s)	55, 58, 81, 429
GsuI	CTGGAG	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	98, 428
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	4 cut(s)	34, 85, 134, 442
Hin1II	CATG	2 cut(s)	402, 693
Hin6I	GCGC	4 cut(s)	32, 83, 132, 440
HinP1I	GCGC	4 cut(s)	32, 83, 132, 440
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	2 cut(s)	422, 520
Hpy188I	TCNGA	3 cut(s)	164, 272, 707
Hpy188III	TCNNGA	2 cut(s)	232, 316
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	49, 548
HpyCH4III	ACNGT	3 cut(s)	18, 250, 682
HpyCH4IV	ACGT	2 cut(s)	26, 168
HpyCH4V	TGCA	3 cut(s)	343, 581, 656
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 138, 377, 437, 618, 662
HpyF3I	CTNAG	4 cut(s)	161, 269, 539, 661
HpySE526I	ACGT	2 cut(s)	26, 168
Hsp92II	CATG	2 cut(s)	402, 693
HspAI	GCGC	4 cut(s)	32, 83, 132, 440
Kzo9I	GATC	3 cut(s)	228, 291, 312
LmnI	GCTCC	2 cut(s)	523, 702
Lsp1109I	GCAGC	2 cut(s)	66, 69
LweI	GCATC	1 cut(s)	429
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	2 cut(s)	26, 168
MalI	GATC	3 cut(s)	230, 293, 314
MboI	GATC	3 cut(s)	228, 291, 312
MfeI	CAATTG	1 cut(s)	648
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	2 cut(s)	482, 648
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	8 cut(s)	31, 96, 96, 145, 228, 276, 548, 635
MroXI	GAANNNNTTC	1 cut(s)	169
MseI	TTAA	1 cut(s)	405
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	4 cut(s)	100, 384, 471, 506
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	3 cut(s)	100, 471, 506
MvnI	CGCG	3 cut(s)	83, 132, 390
MwoI	GCNNNNNNNGC	6 cut(s)	63, 138, 377, 437, 618, 662
NciI	CCSGG	1 cut(s)	384
NdeII	GATC	3 cut(s)	228, 291, 312
NlaIII	CATG	2 cut(s)	402, 693
PdmI	GAANNNNTTC	1 cut(s)	169
PkrI	GCNGC	4 cut(s)	56, 59, 82, 430
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Psp1406I	AACGTT	1 cut(s)	168
Psp6I	CCWGG	3 cut(s)	98, 469, 504
PspGI	CCWGG	3 cut(s)	98, 469, 504
PspPI	GGNCC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	4 cut(s)	55, 58, 81, 429
Sau3AI	GATC	3 cut(s)	228, 291, 312
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	4 cut(s)	100, 384, 471, 506
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	482, 648
SsiI	CCGC	5 cut(s)	52, 78, 81, 130, 429
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	4 cut(s)	98, 382, 469, 504
TaaI	ACNGT	3 cut(s)	18, 250, 682
TaiI	ACGT	2 cut(s)	29, 171
TaqI	TCGA	2 cut(s)	173, 276
TaqII	GACCGA	1 cut(s)	654
TasI	AATT	2 cut(s)	482, 648
TauI	GCSGC	2 cut(s)	83, 431
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	3 cut(s)	21, 293, 685
TseI	GCWGC	2 cut(s)	54, 57
TspDTI	ATGAA	2 cut(s)	218, 454
TspRI	CASTG	3 cut(s)	21, 293, 685
XmnI	GAANNNNTTC	1 cut(s)	169
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.