Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Reverse (-)

35995324 .. 35997492

Gene Structure 2169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1267000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGACTCTCTCACTCTCCTCCACGTCACAACGGAATTTCTCTCTCTACGGCGTCAGCAGCAGGAGCACAACCACCTCCAAATTCTCCGCCTTTCAACCGAGGCCGGCCAAGCTCTCTTGTCTTCTTCTGAGATCACTCCACCGCAACCCTCTCAGAGTTTCGATTGGCGGAAAGAAGGAATTCATGGCGATGAAGGGTAAGAGGAGGGGATCGGGTGCGATGTGTTACGCTGCACCTCTCTCTGTCAACAGCCTCCAGTGGATCTCCACCATTTCTTCTGCGGTTTTGTTGCTTGCAAAAGGGACTGCTGTTCAGAAATCATTTCTTGTTCCCTTATTTCTCCTACAAGCGCCAGCTACCGTTGTCTCATGGATTAAGGGTGAATATGGTATCTGGGCTGCCTTCCTAGCCCTTCTTGTTCGTCTTTTCTTCTTTATTCCTGGAGAACTTGAGTTGCCATTGACAGCATTCCTCCTCGTGATTGTGGCTCCTTACCAAGTTCTAAAACTCAGGGGAAGACAAGAAGGTGCTATTATTTCACTGGTCATTGTAGCATATTTGGCTTTCCAGCACTTCTCACGAATAGGAAGCTTGGAGAGATCATTTGACCGAGGTTCAATTATTGCTACCTTAGCCATCGTTTCTATCACTGCTTTGTCATGCTTGTTCCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

227

Amino Acids

24.7

Weight (kDa)

10.68

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	63 - 216	4.6e-50	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	90, 145, 171, 284
AclWI	GGATC	2 cut(s)	220, 272
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	3 cut(s)	37, 83, 182
AcyI	GRCGYC	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	98, 621
AjiI	CACGTC	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	3 cut(s)	115, 359, 594
AluI	AGCT	3 cut(s)	115, 359, 594
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	2 cut(s)	220, 272
AoxI	GGCC	2 cut(s)	104, 108
ApeKI	GCWGC	3 cut(s)	60, 233, 401
ApoI	RAATTY	3 cut(s)	37, 83, 182
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	395
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	116, 526
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	72, 220, 388
BccI	CCATC	1 cut(s)	647
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	410
BfoI	RGCGCY	1 cut(s)	356
BisI	GCNGC	3 cut(s)	61, 234, 402
BlsI	GCNGC	3 cut(s)	62, 235, 403
Bme1390I	CCNGG	1 cut(s)	444
BmgBI	CACGTC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	444
BpiI	GAAGAC	2 cut(s)	116, 526
BpmI	CTGGAG	2 cut(s)	242, 465
Bpu10I	CCTNAGC	1 cut(s)	634
BpuEI	CTTGAG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	101, 613
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	259, 549
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	101, 613
BseMII	CTCAG	3 cut(s)	122, 169, 526
BseNI	ACTGG	2 cut(s)	259, 549
BseRI	GAGGAG	3 cut(s)	10, 220, 467
BseXI	GCAGC	3 cut(s)	72, 220, 388
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	106, 110
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	106, 110
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	4 cut(s)	134, 212, 264, 602
BspACI	CCGC	4 cut(s)	90, 145, 171, 284
BspANI	GGCC	2 cut(s)	106, 110
BspCNI	CTCAG	3 cut(s)	123, 168, 525
BspLI	GGNNCC	1 cut(s)	492
BspPI	GGATC	2 cut(s)	220, 272
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	259, 549
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	101, 613
BssMI	GATC	4 cut(s)	134, 212, 264, 602
BssNI	GRCGYC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	108, 297, 357
BstDEI	CTNAG	4 cut(s)	131, 155, 512, 634
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	4 cut(s)	137, 215, 267, 605
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	4 cut(s)	134, 212, 264, 602
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 66, 112, 410, 563, 635
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	442
BstV1I	GCAGC	3 cut(s)	72, 220, 388
BstV2I	GAAGAC	2 cut(s)	116, 526
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	106, 110
BtgZI	GCGATG	2 cut(s)	206, 236
BtrI	CACGTC	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	266, 542, 651
Cac8I	GCNNGC	3 cut(s)	108, 297, 357
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	106
CseI	GACGC	1 cut(s)	43
CviAII	CATG	3 cut(s)	187, 372, 663
DdeI	CTNAG	4 cut(s)	131, 155, 512, 634
DpnI	GATC	4 cut(s)	136, 214, 266, 604
DpnII	GATC	4 cut(s)	134, 212, 264, 602
EaeI	YGGCCR	1 cut(s)	108
EciI	GGCGGA	2 cut(s)	79, 186
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	442
FaeI	CATG	3 cut(s)	190, 375, 666
FaiI	YATR	5 cut(s)	188, 373, 390, 559, 664
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	3 cut(s)	186, 371, 662
Fnu4HI	GCNGC	3 cut(s)	61, 234, 402
FseI	GGCCGGCC	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	61, 234, 402
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	3 cut(s)	61, 234, 402
GsuI	CTGGAG	2 cut(s)	242, 465
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	106, 110
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	190, 375, 666
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	592
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	132, 158, 318, 680
Hpy188III	TCNNGA	2 cut(s)	481, 582
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	5 cut(s)	172, 190, 415, 425, 521
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	236, 299
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 66, 112, 410, 563, 635
HpyF3I	CTNAG	4 cut(s)	131, 155, 512, 634
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	190, 375, 666
HspAI	GCGC	1 cut(s)	353
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	134, 212, 264, 602
LmnI	GCTCC	2 cut(s)	66, 496
Lsp1109I	GCAGC	3 cut(s)	72, 220, 388
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	27, 227
MalI	GATC	4 cut(s)	136, 214, 266, 604
MboI	GATC	4 cut(s)	134, 212, 264, 602
MboII	GAAGA	5 cut(s)	116, 119, 270, 424, 531
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	4 cut(s)	37, 83, 182, 621
MroNI	GCCGGC	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	6 cut(s)	60, 66, 112, 410, 563, 635
NaeI	GCCGGC	1 cut(s)	108
NdeII	GATC	4 cut(s)	134, 212, 264, 602
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	3 cut(s)	190, 375, 666
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	470
PdiI	GCCGGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	3 cut(s)	62, 235, 403
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	264
RigI	GGCCGGCC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	61, 234, 402
Sau3AI	GATC	4 cut(s)	134, 212, 264, 602
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	9 cut(s)	29, 80, 117, 241, 361, 532, 596, 619, 635
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	4 cut(s)	37, 83, 182, 621
SsiI	CCGC	4 cut(s)	90, 145, 171, 284
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	442
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	164
TaqII	GACCGA	1 cut(s)	627
TasI	AATT	4 cut(s)	37, 83, 182, 621
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	3 cut(s)	266, 549, 658
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	3 cut(s)	60, 233, 401
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	2 cut(s)	175, 209
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	3 cut(s)	266, 549, 658
XapI	RAATTY	3 cut(s)	37, 83, 182
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.