Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010837.1

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Reverse (-)

2369 .. 4015

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010837.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggcgagcctatcactgtcctccacgccagcgcagaccttctctctccaccgcggcagcacaagcaaggtcgtctccgccgcgcctctgcttcaggccaggaagaagctcttcggcgtttccccccgcgcctccagctcactccattaccatccactcagagtttcgattcgtggaaacgatgagttgaagttgatgaagaagacgacgacgaagaagaagatcaggaggggaatgactacagtttgttatgctttacctctcagagtcgatactatccagtggatcgccaccatctcatctgcgatcctgatctttgcgaaaggaactgctgtgcagaaatcgtttcttgtgcccttgtttgctctacaagcaccgggtcacgtcatctcatggattaagggtgaatatggcatctggaccgcatttttggcgcttcttgttcgtctcttcttcttcattcctggggaacttgaattgccattagtagcatttctcctggtgattgttgccccacaccaagttatgagactcaggggaagacaagaaggtgctattatttccctagtcattgcaggatatttggcttttcagcatttctcacgcattggaagcttgaaccaatcatttgaccgaggttcaattgttgcaaccttagccatcatttgtctcactgttctgtcatgcttgctcctgttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

233

Amino Acids

25.59

Weight (kDa)

10.71

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	54, 83, 129
AciI	CCGC	6 cut(s)	52, 54, 78, 81, 127, 423
AclWI	GGATC	2 cut(s)	293, 301
AcuI	CTGAAG	1 cut(s)	77
AgsI	TTSAA	4 cut(s)	190, 476, 619, 642
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	3 cut(s)	98, 463, 498
AluBI	AGCT	3 cut(s)	109, 138, 615
AluI	AGCT	3 cut(s)	109, 138, 615
Alw26I	GTCTC	4 cut(s)	79, 452, 523, 674
AlwI	GGATC	2 cut(s)	293, 301
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	57
ArsI	GACNNNNNNTTYG	2 cut(s)	412, 444
Asp700I	GAANNNNTTC	1 cut(s)	110
AspLEI	GCGC	4 cut(s)	34, 85, 131, 436
AspS9I	GGNCC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	416, 514
AvaII	GGWCC	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	209, 547
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	3 cut(s)	159, 302, 668
BciT130I	CCWGG	3 cut(s)	100, 465, 500
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	4 cut(s)	79, 452, 523, 674
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	3 cut(s)	55, 58, 81
BlsI	GCNGC	3 cut(s)	56, 59, 82
Bme1390I	CCNGG	4 cut(s)	100, 378, 465, 500
Bme18I	GGWCC	1 cut(s)	420
BmgBI	CACGTC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	420
BmrFI	CCNGG	4 cut(s)	100, 378, 465, 500
BmsI	GCATC	1 cut(s)	423
BpiI	GAAGAC	2 cut(s)	209, 547
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	655
BpuMI	CCSGG	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	311
BsaJI	CCNNGG	3 cut(s)	52, 464, 634
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	3 cut(s)	100, 465, 500
BseDI	CCNNGG	3 cut(s)	52, 464, 634
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	172, 277, 547
BseNI	ACTGG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	356
Bsh1236I	CGCG	3 cut(s)	54, 83, 129
BshFI	GGCC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	377
BsmAI	GTCTC	4 cut(s)	79, 452, 523, 674
BsmBI	CGTCTC	2 cut(s)	79, 452
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	222, 285, 306, 312
BspACI	CCGC	6 cut(s)	52, 54, 78, 81, 127, 423
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	3 cut(s)	171, 276, 546
BspFNI	CGCG	3 cut(s)	54, 83, 129
BspPI	GGATC	2 cut(s)	293, 301
BspQI	GCTCTTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	3 cut(s)	52, 464, 634
BssMI	GATC	4 cut(s)	222, 285, 306, 312
Bst2UI	CCWGG	3 cut(s)	100, 465, 500
Bst4CI	ACNGT	3 cut(s)	18, 244, 676
Bst6I	CTCTTC	2 cut(s)	116, 455
BstC8I	GCNNGC	3 cut(s)	7, 30, 689
BstDEI	CTNAG	4 cut(s)	158, 263, 533, 655
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	3 cut(s)	54, 83, 129
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	4 cut(s)	34, 85, 131, 436
BstKTI	GATC	4 cut(s)	225, 288, 309, 315
BstMAI	GTCTC	4 cut(s)	79, 452, 523, 674
BstMBI	GATC	4 cut(s)	222, 285, 306, 312
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 135, 371, 431, 612, 656
BstNI	CCWGG	3 cut(s)	100, 465, 500
BstSCI	CCNGG	4 cut(s)	98, 376, 463, 498
BstSFI	CTRYAG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	357
BstUI	CGCG	3 cut(s)	54, 83, 129
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	2 cut(s)	209, 547
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	3 cut(s)	14, 287, 672
Cac8I	GCNNGC	3 cut(s)	7, 30, 689
CfoI	GCGC	4 cut(s)	34, 85, 131, 436
Cfr13I	GGNCC	1 cut(s)	420
Cfr42I	CCGCGG	1 cut(s)	55
CviAII	CATG	2 cut(s)	393, 684
CviJI	RGCY	7 cut(s)	9, 98, 109, 138, 587, 615, 659
CviKI_1	RGCY	7 cut(s)	9, 98, 109, 138, 587, 615, 659
DdeI	CTNAG	4 cut(s)	158, 263, 533, 655
DpnI	GATC	4 cut(s)	224, 287, 308, 314
DpnII	GATC	4 cut(s)	222, 285, 306, 312
Eam1104I	CTCTTC	2 cut(s)	116, 455
EarI	CTCTTC	2 cut(s)	116, 455
EciI	GGCGGA	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	3 cut(s)	98, 463, 498
Esp3I	CGTCTC	2 cut(s)	79, 452
FaeI	CATG	2 cut(s)	396, 687
FaiI	YATR	5 cut(s)	252, 394, 411, 527, 685
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	2 cut(s)	392, 683
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	3 cut(s)	55, 58, 81
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	55, 58, 81
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	4 cut(s)	33, 84, 130, 435
GluI	GCNGC	3 cut(s)	55, 58, 81
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	4 cut(s)	34, 85, 131, 436
Hin1II	CATG	2 cut(s)	396, 687
Hin6I	GCGC	4 cut(s)	32, 83, 129, 434
HinP1I	GCGC	4 cut(s)	32, 83, 129, 434
HindIII	AAGCTT	1 cut(s)	613
HinfI	GANTC	3 cut(s)	169, 267, 531
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	416, 514
Hpy188I	TCNGA	3 cut(s)	161, 266, 701
Hpy188III	TCNNGA	3 cut(s)	226, 310, 418
Hpy99I	CGWCG	2 cut(s)	211, 214
HpyAV	CCTTC	2 cut(s)	49, 542
HpyCH4III	ACNGT	3 cut(s)	18, 244, 676
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	337, 575, 650
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 135, 371, 431, 612, 656
HpyF3I	CTNAG	4 cut(s)	158, 263, 533, 655
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	396, 687
HspAI	GCGC	4 cut(s)	32, 83, 129, 434
KspI	CCGCGG	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	222, 285, 306, 312
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	696
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	4 cut(s)	224, 287, 308, 314
MboI	GATC	4 cut(s)	222, 285, 306, 312
MfeI	CAATTG	1 cut(s)	642
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	2 cut(s)	476, 642
MlyI	GAGTC	2 cut(s)	276, 525
MnlI	CCTC	6 cut(s)	31, 96, 142, 222, 270, 629
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	4 cut(s)	100, 378, 465, 500
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	3 cut(s)	100, 465, 500
MvnI	CGCG	3 cut(s)	54, 83, 129
MwoI	GCNNNNNNNGC	6 cut(s)	63, 135, 371, 431, 612, 656
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	4 cut(s)	222, 285, 306, 312
NlaIII	CATG	2 cut(s)	396, 687
NmuCI	GTSAC	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	56, 59, 82
PleI	GAGTC	2 cut(s)	275, 525
PpsI	GAGTC	2 cut(s)	275, 525
Psp6I	CCWGG	3 cut(s)	98, 463, 498
PspGI	CCWGG	3 cut(s)	98, 463, 498
PspPI	GGNCC	1 cut(s)	420
SacII	CCGCGG	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	3 cut(s)	55, 58, 81
Sau3AI	GATC	4 cut(s)	222, 285, 306, 312
Sau96I	GGNCC	1 cut(s)	420
SchI	GAGTC	2 cut(s)	276, 525
ScrFI	CCNGG	4 cut(s)	100, 378, 465, 500
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	240
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	420
Sse9I	AATT	2 cut(s)	476, 642
SsiI	CCGC	6 cut(s)	52, 54, 78, 81, 127, 423
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	4 cut(s)	98, 376, 463, 498
TaaI	ACNGT	3 cut(s)	18, 244, 676
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	2 cut(s)	167, 270
TaqII	GACCGA	1 cut(s)	648
TasI	AATT	2 cut(s)	476, 642
TauI	GCSGC	2 cut(s)	57, 83
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	21, 287, 679
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	2 cut(s)	212, 448
TspRI	CASTG	3 cut(s)	21, 287, 679
VpaK11BI	GGWCC	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.