Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Reverse (-)

355747 .. 362405

Gene Structure 6659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0005600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCAGAGTACTTGTAGTATGAGGCTGGCGGGGATGGAGGACACGGCGGAGCTGCTGGAGAAGAAGCAAGCGTCGGAAATTTTGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGCTTTCAGCCATTACCTCAAATTGATGGGCATTGCTGAAGTTCATCACAGGTCACTGAACGACTTGGGAAAAAAAAATAGGGTTAAATTTCATATATCTCTTAGTGACATATTTTACAACCAATCGACTCTTGCTTGCTTCATCATCAGTAGTAGCAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

94

Amino Acids

10.58

Weight (kDa)

7.83

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 47
AcsI	RAATTY	2 cut(s)	78, 206
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	2 cut(s)	52, 93
AluI	AGCT	2 cut(s)	52, 93
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	2 cut(s)	78, 206
BauI	CACGAG	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	2 cut(s)	28, 139
BceAI	ACGGC	1 cut(s)	60
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmcAI	AGTACT	1 cut(s)	10
BpmI	CTGGAG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	29, 47
BsrDI	GCAATG	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	27, 69, 256
BstDEI	CTNAG	2 cut(s)	94, 221
BstF5I	GGATG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	3 cut(s)	27, 69, 256
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	9
CviJI	RGCY	4 cut(s)	25, 52, 93, 129
CviKI_1	RGCY	4 cut(s)	25, 52, 93, 129
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	2 cut(s)	94, 221
EciI	GGCGGA	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	177
FaiI	YATR	4 cut(s)	20, 213, 215, 230
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	94, 221
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	3 cut(s)	11, 41, 154
Lsp1109I	GCAGC	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	171, 224
MboII	GAAGA	2 cut(s)	73, 97
MluCI	AATT	3 cut(s)	78, 140, 206
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	15, 31, 91, 94, 146
MseI	TTAA	2 cut(s)	204, 283
NmuCI	GTSAC	2 cut(s)	171, 224
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	204, 283
SatI	GCNGC	1 cut(s)	53
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	1 cut(s)	241
SetI	ASST	4 cut(s)	54, 95, 138, 173
Sse9I	AATT	3 cut(s)	78, 140, 206
SsiI	CCGC	2 cut(s)	29, 47
TaqI	TCGA	1 cut(s)	245
TasI	AATT	3 cut(s)	78, 140, 206
TatI	WGTACW	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	204, 283
Tru9I	TTAA	2 cut(s)	204, 283
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	2 cut(s)	171, 224
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	2 cut(s)	171, 224
TspDTI	ATGAA	3 cut(s)	152, 200, 250
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	2 cut(s)	78, 206
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.