Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Forward (+)

8974676 .. 8976569

Gene Structure 1894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG109000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCGAGCCTATCACTGTCCTCCACGCCAGCGCAGACCTTCTCTCTCCACCGCAGCAGCACAAGCAAGGTCGTCTCCACCGCGCCTCTGCTTCAGGCCAGGAAGAAGCTCTTCGGCGTTTTCCCCCGCGCCTCTAGCTCACTCCATTACCATCCACTCAGAGTTTCGATTAGTAGAAACGTTTCGATTCGTGGGAACGATGAGTTGAAGTTGATGAAGAAGACGACGACGAAGAAGATCAGGAGGGGAATGACTACAGTTTGTTATGCTTTACCTCTCAGAGTCGATACTATCCAGTGGATCGCCACCATCTCATCTGCGATCCTGATGTTTGCGAAAGGAACTGCTGTGCAGAAATCGTTTCTTGTGCCCTTGTTTGCTCTACAAGCACCGGGTCACGTCATCTCATGGATGAAGGGTGAATATGGCATCTGGGCCGCATTTTTGGCGCTTCTTGTTCGTCTCTTCTTCTTCATTCCTGGTAGGTCCTCTTTCGATTCCTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

169

Amino Acids

18.72

Weight (kDa)

11.27

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	72 - 160	8.1e-24	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	83, 129
AciI	CCGC	4 cut(s)	52, 81, 127, 438
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	2 cut(s)	308, 316
AcuI	CTGAAG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	2 cut(s)	98, 478
AluBI	AGCT	2 cut(s)	109, 138
AluI	AGCT	2 cut(s)	109, 138
Alw26I	GTCTC	2 cut(s)	79, 467
AlwI	GGATC	2 cut(s)	308, 316
AoxI	GGCC	2 cut(s)	96, 435
ApeKI	GCWGC	2 cut(s)	54, 57
Asp700I	GAANNNNTTC	2 cut(s)	110, 181
AspLEI	GCGC	4 cut(s)	34, 85, 131, 451
AspS9I	GGNCC	2 cut(s)	435, 486
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	66, 69
BccI	CCATC	2 cut(s)	159, 317
BciT130I	CCWGG	2 cut(s)	100, 480
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	79, 467
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	452
BisI	GCNGC	3 cut(s)	55, 58, 438
BlsI	GCNGC	3 cut(s)	56, 59, 439
Bme1390I	CCNGG	3 cut(s)	100, 393, 480
Bme18I	GGWCC	1 cut(s)	486
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	2 cut(s)	435, 486
BmrFI	CCNGG	3 cut(s)	100, 393, 480
BmsI	GCATC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	501
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	100, 480
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	2 cut(s)	151, 417
BseMII	CTCAG	2 cut(s)	172, 292
BseNI	ACTGG	1 cut(s)	295
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	66, 69
BsgI	GTGCAG	1 cut(s)	371
Bsh1236I	CGCG	2 cut(s)	83, 129
BshFI	GGCC	2 cut(s)	98, 437
BsiSI	CCGG	1 cut(s)	392
BsmAI	GTCTC	2 cut(s)	79, 467
BsmBI	CGTCTC	2 cut(s)	79, 467
BsnI	GGCC	2 cut(s)	98, 437
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	237, 300, 321
BspACI	CCGC	4 cut(s)	52, 81, 127, 438
BspANI	GGCC	2 cut(s)	98, 437
BspCNI	CTCAG	2 cut(s)	171, 291
BspFNI	CGCG	2 cut(s)	83, 129
BspPI	GGATC	2 cut(s)	308, 316
BspQI	GCTCTTC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	3 cut(s)	237, 300, 321
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	100, 480
Bst4CI	ACNGT	2 cut(s)	18, 259
Bst6I	CTCTTC	2 cut(s)	116, 470
BstC8I	GCNNGC	2 cut(s)	7, 30
BstDEI	CTNAG	2 cut(s)	158, 278
BstF5I	GGATG	2 cut(s)	151, 417
BstFNI	CGCG	2 cut(s)	83, 129
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	4 cut(s)	34, 85, 131, 451
BstKTI	GATC	3 cut(s)	240, 303, 324
BstMAI	GTCTC	2 cut(s)	79, 467
BstMBI	GATC	3 cut(s)	237, 300, 321
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 135, 386, 446
BstNI	CCWGG	2 cut(s)	100, 480
BstSCI	CCNGG	3 cut(s)	98, 391, 478
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	372
BstUI	CGCG	2 cut(s)	83, 129
BstV1I	GCAGC	2 cut(s)	66, 69
BstV2I	GAAGAC	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	98, 437
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	151, 417
BtsIMutI	CAGTG	2 cut(s)	14, 302
Cac8I	GCNNGC	2 cut(s)	7, 30
CfoI	GCGC	4 cut(s)	34, 85, 131, 451
Cfr13I	GGNCC	2 cut(s)	435, 486
CviAII	CATG	1 cut(s)	408
CviJI	RGCY	5 cut(s)	9, 98, 109, 138, 437
CviKI_1	RGCY	5 cut(s)	9, 98, 109, 138, 437
DdeI	CTNAG	2 cut(s)	158, 278
DpnI	GATC	3 cut(s)	239, 302, 323
DpnII	GATC	3 cut(s)	237, 300, 321
Eam1104I	CTCTTC	2 cut(s)	116, 470
EarI	CTCTTC	2 cut(s)	116, 470
Eco130I	CCWWGG	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	98, 478
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
Esp3I	CGTCTC	2 cut(s)	79, 467
FaeI	CATG	1 cut(s)	411
FaiI	YATR	3 cut(s)	267, 409, 426
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	1 cut(s)	407
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	3 cut(s)	55, 58, 438
FokI	GGATG	2 cut(s)	138, 424
Fsp4HI	GCNGC	3 cut(s)	55, 58, 438
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	4 cut(s)	33, 84, 130, 450
GluI	GCNGC	3 cut(s)	55, 58, 438
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	2 cut(s)	98, 437
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	4 cut(s)	34, 85, 131, 451
Hin1II	CATG	1 cut(s)	411
Hin6I	GCGC	4 cut(s)	32, 83, 129, 449
HinP1I	GCGC	4 cut(s)	32, 83, 129, 449
HinfI	GANTC	3 cut(s)	187, 282, 497
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	431
Hpy188I	TCNGA	2 cut(s)	161, 281
Hpy188III	TCNNGA	2 cut(s)	241, 325
Hpy99I	CGWCG	2 cut(s)	229, 232
HpyAV	CCTTC	2 cut(s)	49, 409
HpyCH4III	ACNGT	2 cut(s)	18, 259
HpyCH4IV	ACGT	2 cut(s)	180, 399
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 135, 386, 446
HpyF3I	CTNAG	2 cut(s)	158, 278
HpySE526I	ACGT	2 cut(s)	180, 399
Hsp92II	CATG	1 cut(s)	411
HspAI	GCGC	4 cut(s)	32, 83, 129, 449
Kzo9I	GATC	3 cut(s)	237, 300, 321
LguI	GCTCTTC	1 cut(s)	116
Lsp1109I	GCAGC	2 cut(s)	66, 69
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	2 cut(s)	180, 399
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	3 cut(s)	239, 302, 323
MboI	GATC	3 cut(s)	237, 300, 321
MboII	GAAGA	9 cut(s)	103, 115, 229, 232, 244, 247, 457, 460, 463
MhlI	GDGCHC	1 cut(s)	372
MlyI	GAGTC	1 cut(s)	291
MnlI	CCTC	6 cut(s)	31, 96, 142, 237, 285, 499
MroXI	GAANNNNTTC	2 cut(s)	110, 181
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	3 cut(s)	100, 393, 480
MvaI	CCWGG	2 cut(s)	100, 480
MvnI	CGCG	2 cut(s)	83, 129
MwoI	GCNNNNNNNGC	4 cut(s)	63, 135, 386, 446
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	237, 300, 321
NlaIII	CATG	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	2 cut(s)	110, 181
PfeI	GAWTC	2 cut(s)	187, 497
PkrI	GCNGC	3 cut(s)	56, 59, 439
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PpuMI	RGGWCCY	1 cut(s)	486
Psp1406I	AACGTT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	98, 478
PspGI	CCWGG	2 cut(s)	98, 478
PspPI	GGNCC	2 cut(s)	435, 486
PspPPI	RGGWCCY	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	116
SatI	GCNGC	3 cut(s)	55, 58, 438
Sau3AI	GATC	3 cut(s)	237, 300, 321
Sau96I	GGNCC	2 cut(s)	435, 486
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	3 cut(s)	100, 393, 480
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	8 cut(s)	41, 72, 111, 140, 183, 277, 402, 488
SfaNI	GCATC	1 cut(s)	438
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	486
SsiI	CCGC	4 cut(s)	52, 81, 127, 438
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	98, 391, 478
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	18, 259
TaiI	ACGT	2 cut(s)	183, 402
TaqI	TCGA	4 cut(s)	167, 185, 285, 495
TauI	GCSGC	1 cut(s)	440
TfiI	GAWTC	2 cut(s)	187, 497
TscAI	CASTG	2 cut(s)	21, 302
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	54, 57
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	3 cut(s)	230, 428, 463
TspRI	CASTG	2 cut(s)	21, 302
VpaK11BI	GGWCC	1 cut(s)	486
XmnI	GAANNNNTTC	2 cut(s)	110, 181
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.