Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Reverse (-)

42283414 .. 42285577

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1291300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGACTCTCTCACTCTCCTCCACTTCACCACCGACTGTCTCTCTCTACAGCGTCGGCAGCAGCGGCGCTACCACCTCCAAATTCTCCGCCTTTCAACATAGGCCGGCCAAGCTCTCTTGTCTTCGTCTGGGCTCACTCCACCGCAACCCTCTCAGAGTTTCGATTGGTGGAAAGAAGGAGTTCGTGGTGATGAAGGGTAAGAGGAGGGGATCGGGTGCGATGTGTTACACTTACGCTGCACCTCTCTCTGTCAACACCCTCCAGTTTATCTCCACCATTTCTACTGCGGTTCTGTTGCTTGCAAAAGGGACTGCTGTTCAGAAATCATTTCTTGTTCCCTTATTTCTTCTACAAGCGCCGGCTGCCGTCATCTCATGGATTAAGGGTGAATATGGTATCTGGGCTGCATTCCTAGCCCTTCTTGTCCGTCTCTTCTTCTTTATTCCCGGGGAACTTGAGTTGCCATTGACAGCAGTACTCCTGGTGATTGTGGCTCCTTACCAAGTTCTGCATATAAGGGGAAGACAAGAAGGTGCTATTATTGCACTGGTTGTTGCAGCATATTTGGCTTTCCAGCACTTCTCACGAATAGGAAGCCTGCAGAGATCATTTGAGCGAGGTTCAATTATTGCTACCATAGCCATCATTTCCATCACTGCTGTGTCATGCTTGTACCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

229

Amino Acids

24.57

Weight (kDa)

10.33

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	65 - 218	1.1e-49	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	66, 90, 145, 290
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	83
AfaI	GTAC	2 cut(s)	480, 677
AgsI	TTSAA	2 cut(s)	98, 627
AjnI	CCWGG	1 cut(s)	483
AleI	CACNNNNGTG	1 cut(s)	662
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	46, 437
AlwI	GGATC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	104, 108
ApeKI	GCWGC	6 cut(s)	60, 63, 239, 365, 407, 560
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	71, 361
AsuC2I	CCSGG	2 cut(s)	450, 451
AsuHPI	GGTGA	4 cut(s)	21, 202, 401, 499
AvaI	CYCGRG	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	116, 532
BbvI	GCAGC	6 cut(s)	72, 75, 226, 352, 394, 572
BccI	CCATC	2 cut(s)	653, 662
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	485
BcnI	CCSGG	2 cut(s)	450, 451
BcoDI	GTCTC	2 cut(s)	46, 437
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	2 cut(s)	49, 602
BfoI	RGCGCY	2 cut(s)	72, 362
BisI	GCNGC	7 cut(s)	61, 64, 67, 240, 366, 408, 561
BlsI	GCNGC	7 cut(s)	62, 65, 68, 241, 367, 409, 562
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	3 cut(s)	450, 451, 485
BmeT110I	CYCGRG	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	3 cut(s)	450, 451, 485
BpiI	GAAGAC	2 cut(s)	116, 532
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	2 cut(s)	450, 451
BsaJI	CCNNGG	2 cut(s)	449, 450
Bse118I	RCCGGY	2 cut(s)	106, 361
Bse1I	ACTGG	2 cut(s)	265, 555
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	449, 450
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	2 cut(s)	265, 555
BseRI	GAGGAG	2 cut(s)	10, 220
BseXI	GCAGC	6 cut(s)	72, 75, 226, 352, 394, 572
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	106, 110
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	3 cut(s)	107, 362, 450
BslFI	GGGAC	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	46, 437
BsmBI	CGTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	106, 110
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	212, 608
BspACI	CCGC	4 cut(s)	66, 90, 145, 290
BspANI	GGCC	2 cut(s)	106, 110
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	498
BspMAI	CTGCAG	1 cut(s)	606
BspPI	GGATC	1 cut(s)	220
BsrFI	RCCGGY	2 cut(s)	106, 361
BsrI	ACTGG	2 cut(s)	265, 555
BssAI	RCCGGY	2 cut(s)	106, 361
BssECI	CCNNGG	2 cut(s)	449, 450
BssMI	GATC	2 cut(s)	212, 608
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	440
BstC8I	GCNNGC	4 cut(s)	108, 303, 363, 602
BstDEI	CTNAG	1 cut(s)	155
BstH2I	RGCGCY	2 cut(s)	72, 362
BstHHI	GCGC	2 cut(s)	71, 361
BstKTI	GATC	2 cut(s)	215, 611
BstMAI	GTCTC	2 cut(s)	46, 437
BstMBI	GATC	2 cut(s)	212, 608
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 66, 112, 365, 416, 545, 569, 641
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	3 cut(s)	448, 449, 483
BstSFI	CTRYAG	2 cut(s)	49, 602
BstV1I	GCAGC	6 cut(s)	72, 75, 226, 352, 394, 572
BstV2I	GAAGAC	2 cut(s)	116, 532
BsuRI	GGCC	2 cut(s)	106, 110
BtgZI	GCGATG	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	2 cut(s)	548, 657
Cac8I	GCNNGC	4 cut(s)	108, 303, 363, 602
CfoI	GCGC	2 cut(s)	71, 361
Cfr10I	RCCGGY	2 cut(s)	106, 361
Cfr9I	CCCGGG	1 cut(s)	449
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	479, 676
CviAII	CATG	2 cut(s)	378, 669
CviQI	GTAC	2 cut(s)	479, 676
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	214, 610
DpnII	GATC	2 cut(s)	212, 608
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	2 cut(s)	381, 672
FaiI	YATR	8 cut(s)	102, 379, 396, 516, 518, 565, 641, 670
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	2 cut(s)	377, 668
Fnu4HI	GCNGC	7 cut(s)	61, 64, 67, 240, 366, 408, 561
FriOI	GRGCYC	1 cut(s)	137
FseI	GGCCGGCC	1 cut(s)	110
Fsp4HI	GCNGC	7 cut(s)	61, 64, 67, 240, 366, 408, 561
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	2 cut(s)	70, 360
GluI	GCNGC	7 cut(s)	61, 64, 67, 240, 366, 408, 561
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	2 cut(s)	72, 362
HaeIII	GGCC	2 cut(s)	106, 110
HapII	CCGG	3 cut(s)	107, 362, 450
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	2 cut(s)	71, 361
Hin1II	CATG	2 cut(s)	381, 672
Hin6I	GCGC	2 cut(s)	69, 359
HinP1I	GCGC	2 cut(s)	69, 359
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	3 cut(s)	107, 362, 450
HphI	GGTGA	4 cut(s)	21, 202, 401, 499
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	158, 324, 686
Hpy188III	TCNNGA	1 cut(s)	588
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	172, 190, 431, 527
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	7 cut(s)	242, 305, 410, 514, 548, 560, 604
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 66, 112, 365, 416, 545, 569, 641
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	381, 672
HspAI	GCGC	2 cut(s)	69, 359
KroI	GCCGGC	2 cut(s)	106, 361
KroNI	GCCGGC	2 cut(s)	108, 363
Kzo9I	GATC	2 cut(s)	212, 608
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	6 cut(s)	72, 75, 226, 352, 394, 572
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	214, 610
MboI	GATC	2 cut(s)	212, 608
MboII	GAAGA	5 cut(s)	116, 341, 427, 430, 537
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	2 cut(s)	83, 627
MnlI	CCTC	8 cut(s)	31, 88, 162, 198, 201, 255, 272, 614
MroNI	GCCGGC	2 cut(s)	106, 361
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	3 cut(s)	107, 362, 450
MspR9I	CCNGG	3 cut(s)	450, 451, 485
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	8 cut(s)	60, 66, 112, 365, 416, 545, 569, 641
NaeI	GCCGGC	2 cut(s)	108, 363
NciI	CCSGG	2 cut(s)	450, 451
NdeII	GATC	2 cut(s)	212, 608
NgoMIV	GCCGGC	2 cut(s)	106, 361
NlaIII	CATG	2 cut(s)	381, 672
NlaIV	GGNNCC	1 cut(s)	498
OliI	CACNNNNGTG	1 cut(s)	662
PctI	GAATGC	1 cut(s)	410
PdiI	GCCGGC	2 cut(s)	108, 363
PdmI	GAANNNNTTC	1 cut(s)	182
PkrI	GCNGC	7 cut(s)	62, 65, 68, 241, 367, 409, 562
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	498
PstI	CTGCAG	1 cut(s)	606
RigI	GGCCGGCC	1 cut(s)	110
RsaI	GTAC	2 cut(s)	480, 677
RsaNI	GTAC	2 cut(s)	479, 676
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	7 cut(s)	61, 64, 67, 240, 366, 408, 561
Sau3AI	GATC	2 cut(s)	212, 608
ScaI	AGTACT	1 cut(s)	480
ScrFI	CCNGG	3 cut(s)	450, 451, 485
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	6 cut(s)	80, 117, 247, 538, 625, 681
SfcI	CTRYAG	2 cut(s)	49, 602
SmaI	CCCGGG	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	83, 627
SsiI	CCGC	4 cut(s)	66, 90, 145, 290
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	3 cut(s)	448, 449, 483
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	83, 627
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	555, 664
TseI	GCWGC	6 cut(s)	60, 63, 239, 365, 407, 560
TspDTI	ATGAA	1 cut(s)	209
TspGWI	ACGGA	1 cut(s)	419
TspMI	CCCGGG	1 cut(s)	449
TspRI	CASTG	2 cut(s)	555, 664
XapI	RAATTY	1 cut(s)	83
XmaI	CCCGGG	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.