Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009568

Physical Location & Seq

Genomic Coordinates Forward (+)

3642570 .. 3645468

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G074300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAAAATGGCGAGCCTCTCACTCTCCTCCACGTCACCACAGACTTTCTCTCTTTACAGCATCAGGAGCAGCACCAAGTTCTCCGTCTCTCAACCAAGGCCGGCCAAGCTCTCTAGTCTTCTTCTTGCTCGCACCTCCAGCTCACTCCACTATAACCCTCTCAGAGTTTCGATTGGTGGAAATAATGATCTCGGGGTGCTGAAGAAGAAGAAGAAGAGCATGGGATCGGGTGCGGTATGTTACGCTGCACCTCTCACTGTTCATACCCTCCAGTGGATCTCCACCATTTCTTCTGCGGTTCTACTGCTTGCAAAAGGCACTGCTGTTCAAAAATCATTTCTTGTTCCATTGTTTGTTCTACAAGCACCATCCGCTGTAATCTCATGGTTTAAGGGCGAATATGGTATCTGGACTGCATTCTTAGCACTTCTTGTTCGTCTCTTCTTCTTTATTCCTGCCGAACTTGAGTTGCCATTGGTAGCATTACTCCTGGTGATTGTGGCTCCTTACCAAGTTACGAACATAAGGGGAAGACAAGAAGGTGCTATTATTTCACTGGTTATTGCAGCGTATTTGGCTTTCCAGCATTTCTCACGAATAGGAACCTTGCAGAAATCATTTGACCGAGGTTCACTTGTTGCTACCTTAGCCATAATTTCTATCACTGCTGTGTCAGGCCTTCTCCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009631 GO:0009706 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0016021 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031668 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0033554 GO:0033993 GO:0034357 GO:0042170 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

231

Amino Acids

24.82

Weight (kDa)

10.39

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29390 AT1G29390 AT1G29395
fragaria_vesca	FvH4_3g06340 FvH4_3g06340
malus_domestica	MD05G1291300.v1.1 MD10G1267000.v1.1 MD13G1187800.v1.1
prunus_persica	Prupe.4G074300_v2.0.a1 Prupe.4G074300_v2.0.a1
pyrus_communis	pycom05g26780 pycom10g22320
rosa_chinensis	RchiOBHm_Chr5g0012971
rosa_laevigata	RLG00000031973
rosa_multiflora	Rmu_sc0010837.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063610
rosa_rugosa	Rorug05G0005600
rosa_samantha	Rh5AG100000 Rh5BG096700 Rh5CG109000 Rh5DG095500
rosa_wichuraiana	Rw5G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	233, 296, 372
AclWI	GGATC	2 cut(s)	232, 284
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	329
AjiI	CACGTC	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	489
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	2 cut(s)	109, 141
AluI	AGCT	2 cut(s)	109, 141
Alw26I	GTCTC	2 cut(s)	91, 443
AlwI	GGATC	2 cut(s)	232, 284
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	98, 102, 676
ApeKI	GCWGC	3 cut(s)	69, 245, 566
AsuHPI	GGTGA	2 cut(s)	27, 505
AvaI	CYCGRG	1 cut(s)	191
BbsI	GAAGAC	2 cut(s)	110, 538
BbvI	GCAGC	3 cut(s)	81, 232, 578
BccI	CCATC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	491
BcoDI	GTCTC	2 cut(s)	91, 443
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	3 cut(s)	70, 246, 567
BlsI	GCNGC	3 cut(s)	71, 247, 568
Bme1390I	CCNGG	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	504, 604
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	2 cut(s)	110, 538
BpmI	CTGGAG	2 cut(s)	121, 254
Bpu10I	CCTNAGC	1 cut(s)	646
BpuEI	CTTGAG	1 cut(s)	485
BsaJI	CCNNGG	2 cut(s)	95, 625
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	271, 561
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	95, 625
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	2 cut(s)	271, 561
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	3 cut(s)	81, 232, 578
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	100, 104, 678
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	2 cut(s)	91, 443
BsmBI	CGTCTC	2 cut(s)	91, 443
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	100, 104, 678
BsoBI	CYCGRG	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	187, 224, 276
BspACI	CCGC	3 cut(s)	233, 296, 372
BspANI	GGCC	3 cut(s)	100, 104, 678
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	504, 604
BspPI	GGATC	2 cut(s)	232, 284
BspQI	GCTCTTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	271, 561
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	95, 625
BssMI	GATC	3 cut(s)	187, 224, 276
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	209, 446
BstC8I	GCNNGC	4 cut(s)	13, 102, 130, 309
BstDEI	CTNAG	3 cut(s)	161, 421, 646
BstF5I	GGATG	1 cut(s)	368
BstKTI	GATC	3 cut(s)	190, 227, 279
BstMAI	GTCTC	2 cut(s)	91, 443
BstMBI	GATC	3 cut(s)	187, 224, 276
BstMWI	GCNNNNNNNGC	7 cut(s)	66, 106, 138, 371, 422, 575, 647
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstV1I	GCAGC	3 cut(s)	81, 232, 578
BstV2I	GAAGAC	2 cut(s)	110, 538
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	100, 104, 678
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	368
BtsI	GCAGTG	2 cut(s)	318, 663
BtsIMutI	CAGTG	5 cut(s)	255, 278, 318, 554, 663
Cac8I	GCNNGC	4 cut(s)	13, 102, 130, 309
Cfr10I	RCCGGY	1 cut(s)	100
CviAII	CATG	2 cut(s)	220, 384
CviJI	RGCY	9 cut(s)	15, 100, 104, 109, 141, 503, 578, 650, 678
CviKI_1	RGCY	9 cut(s)	15, 100, 104, 109, 141, 503, 578, 650, 678
DdeI	CTNAG	3 cut(s)	161, 421, 646
DpnI	GATC	3 cut(s)	189, 226, 278
DpnII	GATC	3 cut(s)	187, 224, 276
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	209, 446
EarI	CTCTTC	2 cut(s)	209, 446
Eco130I	CCWWGG	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	678
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
Esp3I	CGTCTC	2 cut(s)	91, 443
FaeI	CATG	2 cut(s)	223, 387
FaiI	YATR	8 cut(s)	153, 221, 238, 264, 385, 402, 524, 653
FatI	CATG	2 cut(s)	219, 383
Fnu4HI	GCNGC	3 cut(s)	70, 246, 567
FokI	GGATG	1 cut(s)	355
FseI	GGCCGGCC	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	70, 246, 567
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	3 cut(s)	70, 246, 567
GsuI	CTGGAG	2 cut(s)	121, 254
HaeIII	GGCC	3 cut(s)	100, 104, 678
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	2 cut(s)	223, 387
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	27, 505
Hpy166II	GTNNAC	1 cut(s)	632
Hpy188I	TCNGA	2 cut(s)	164, 692
Hpy188III	TCNNGA	3 cut(s)	64, 409, 594
Hpy8I	GTNNAC	1 cut(s)	632
HpyAV	CCTTC	2 cut(s)	533, 689
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	5 cut(s)	248, 311, 416, 566, 610
HpyF10VI	GCNNNNNNNGC	7 cut(s)	66, 106, 138, 371, 422, 575, 647
HpyF3I	CTNAG	3 cut(s)	161, 421, 646
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	223, 387
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	187, 224, 276
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	66, 508
Lsp1109I	GCAGC	3 cut(s)	81, 232, 578
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	3 cut(s)	33, 239, 514
MalI	GATC	3 cut(s)	189, 226, 278
MboI	GATC	3 cut(s)	187, 224, 276
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	1 cut(s)	654
MnlI	CCTC	7 cut(s)	26, 37, 145, 168, 261, 278, 620
MroNI	GCCGGC	1 cut(s)	100
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	7 cut(s)	66, 106, 138, 371, 422, 575, 647
NaeI	GCCGGC	1 cut(s)	102
NdeII	GATC	3 cut(s)	187, 224, 276
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	223, 387
NlaIV	GGNNCC	2 cut(s)	504, 604
NmuCI	GTSAC	1 cut(s)	33
OliI	CACNNNNGTG	1 cut(s)	668
PceI	AGGCCT	1 cut(s)	678
PciSI	GCTCTTC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	416
PdiI	GCCGGC	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	71, 247, 568
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	504, 604
PsuI	RGATCY	1 cut(s)	276
RigI	GGCCGGCC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	668
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	3 cut(s)	70, 246, 567
Sau3AI	GATC	3 cut(s)	187, 224, 276
ScrFI	CCNGG	1 cut(s)	491
SetI	ASST	9 cut(s)	35, 111, 137, 143, 253, 544, 608, 631, 647
SfaNI	GCATC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	1 cut(s)	654
SseBI	AGGCCT	1 cut(s)	678
SsiI	CCGC	3 cut(s)	233, 296, 372
SspMI	CTAG	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	678
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	170
TaqII	GACCGA	1 cut(s)	639
TasI	AATT	1 cut(s)	654
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	5 cut(s)	262, 278, 325, 561, 670
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	3 cut(s)	69, 245, 566
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	2 cut(s)	17, 251
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	5 cut(s)	262, 278, 325, 561, 670
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.