AT1G29520

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009983
Physical Location & Seq
Forward (+)
10323636 .. 10324826
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29520.1

Sequence Viewer

Length: 477 bp
ATGGCGGGTGAGCAAATCAAACCTGTTGCCTCTGGACTTCTAGTTTTGAACTTCTGCATGTATGTGATCGTTCTAGGCATTGGAGGATGGGCCATGAACCGAGCCATCGACCATGGATTCGAAGTCGGCCCTAATTTAGAGCTTCCAGCACATTTCTCCCCAATTTATTTCCCGATGGGAAACGCAGCCACAGGATTCTTTGTGATATTCGCGTTGCTAGCGGGAGTAGTTGGAGCAGCTTCCACAATCTCAGGCCTTAGCCACATTCGTTCGTGGACCGTGGGAAGCTTACCAGCAGCAGCCACAGCTGCAACCATTGCCTGGACCCTCACAGTCCTTGCCATGGGTTTCGCTTGGAAAGAAATCGAGCTACAAGGGAGAAATGCAAAACTGAGAACCATGGAGGCGTTCTTGATCATACTCTCAGTCACCCAGCTTATTTACATCGCAGCAGTTCATGGCGTGAGGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

158

Amino Acids

16.81

Weight (kDa)

8.98

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 15 - 154 2.2e-64 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 321
AccII CGCG 1 cut(s) 212
AciI CCGC 2 cut(s) 5, 221
AfiI CCNNNNNNNGG 2 cut(s) 321, 343
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 6 cut(s) 142, 239, 288, 308, 370, 436
AluI AGCT 6 cut(s) 142, 239, 288, 308, 370, 436
Alw26I GTCTC 1 cut(s) 463
AoxI GGCC 3 cut(s) 90, 127, 253
ApeKI GCWGC 6 cut(s) 185, 236, 296, 299, 308, 449
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspS9I GGNCC 4 cut(s) 90, 128, 276, 324
AsuHPI GGTGA 2 cut(s) 20, 421
AsuII TTCGAA 1 cut(s) 120
AsuNHI GCTAGC 1 cut(s) 217
AvaII GGWCC 2 cut(s) 276, 324
BbvI GCAGC 6 cut(s) 197, 248, 295, 308, 311, 461
BccI CCATC 3 cut(s) 81, 113, 169
BciT130I CCWGG 1 cut(s) 322
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 3 cut(s) 41, 74, 218
BisI GCNGC 6 cut(s) 186, 237, 297, 300, 309, 450
BlsI GCNGC 6 cut(s) 187, 238, 298, 301, 310, 451
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 2 cut(s) 276, 324
BmgT120I GGNCC 4 cut(s) 90, 128, 276, 324
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 322
BmtI GCTAGC 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 4 cut(s) 112, 279, 342, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 343
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 4 cut(s) 112, 279, 342, 399
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 321, 343
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 3 cut(s) 264, 383, 438
BseXI GCAGC 6 cut(s) 197, 248, 295, 308, 311, 461
BseYI CCCAGC 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 3 cut(s) 92, 129, 255
BslI CCNNNNNNNGG 2 cut(s) 321, 343
BsmAI GTCTC 1 cut(s) 463
BsnI GGCC 3 cut(s) 92, 129, 255
Bso31I GGTCTC 1 cut(s) 463
Bsp119I TTCGAA 1 cut(s) 120
Bsp143I GATC 2 cut(s) 66, 414
Bsp19I CCATGG 3 cut(s) 112, 342, 399
BspACI CCGC 2 cut(s) 5, 221
BspANI GGCC 3 cut(s) 92, 129, 255
BspCNI CTCAG 3 cut(s) 263, 384, 437
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 326
BspOI GCTAGC 1 cut(s) 221
BspT104I TTCGAA 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 463
BsrDI GCAATG 1 cut(s) 315
BssECI CCNNGG 4 cut(s) 112, 279, 342, 399
BssMI GATC 2 cut(s) 66, 414
BssT1I CCWWGG 3 cut(s) 112, 342, 399
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 280, 334
BstAPI GCANNNNNTGC 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 4 cut(s) 250, 257, 392, 424
BstDSI CCRYGG 4 cut(s) 112, 279, 342, 399
BstF5I GGATG 1 cut(s) 92
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 2 cut(s) 69, 417
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 2 cut(s) 66, 414
BstMWI GCNNNNNNNGC 4 cut(s) 218, 305, 308, 317
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 320
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 6 cut(s) 197, 248, 295, 308, 311, 461
BsuRI GGCC 3 cut(s) 92, 129, 255
BtgI CCRYGG 4 cut(s) 112, 279, 342, 399
BtgZI GCGATG 1 cut(s) 430
BtsCI GGATG 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 219
Cfr13I GGNCC 4 cut(s) 90, 128, 276, 324
CviAII CATG 6 cut(s) 58, 94, 113, 343, 400, 458
DdeI CTNAG 4 cut(s) 250, 257, 392, 424
DpnI GATC 2 cut(s) 68, 416
DpnII GATC 2 cut(s) 66, 414
Eco130I CCWWGG 3 cut(s) 112, 342, 399
Eco147I AGGCCT 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 276, 324
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 3 cut(s) 112, 342, 399
ErhI CCWWGG 3 cut(s) 112, 342, 399
FaeI CATG 6 cut(s) 61, 97, 116, 346, 403, 461
FaiI YATR 8 cut(s) 59, 63, 95, 114, 344, 401, 419, 459
FatI CATG 6 cut(s) 57, 93, 112, 342, 399, 457
FauI CCCGC 1 cut(s) 214
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 6 cut(s) 186, 237, 297, 300, 309, 450
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 6 cut(s) 186, 237, 297, 300, 309, 450
FspBI CTAG 3 cut(s) 41, 74, 218
GluI GCNGC 6 cut(s) 186, 237, 297, 300, 309, 450
GsaI CCCAGC 1 cut(s) 436
HaeIII GGCC 3 cut(s) 92, 129, 255
Hin1II CATG 6 cut(s) 61, 97, 116, 346, 403, 461
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 2 cut(s) 117, 195
HphI GGTGA 2 cut(s) 20, 421
Hpy166II GTNNAC 1 cut(s) 276
Hpy188III TCNNGA 3 cut(s) 33, 172, 412
Hpy8I GTNNAC 1 cut(s) 276
HpyCH4III ACNGT 2 cut(s) 280, 334
HpyCH4V TGCA 3 cut(s) 57, 311, 386
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 305, 308, 317
HpyF3I CTNAG 4 cut(s) 250, 257, 392, 424
Hsp92II CATG 6 cut(s) 61, 97, 116, 346, 403, 461
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 2 cut(s) 66, 414
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 9 cut(s) 18, 36, 159, 177, 237, 306, 307, 334, 446
Lsp1109I GCAGC 6 cut(s) 197, 248, 295, 308, 311, 461
MaeI CTAG 3 cut(s) 41, 74, 218
MaeIII GTNAC 1 cut(s) 427
MalI GATC 2 cut(s) 68, 416
MboI GATC 2 cut(s) 66, 414
MluCI AATT 2 cut(s) 133, 162
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 5 cut(s) 40, 77, 338, 397, 459
MseI TTAA 1 cut(s) 475
MslI CAYNNNNRTG 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 4 cut(s) 218, 305, 308, 317
NcoI CCATGG 3 cut(s) 112, 342, 399
NdeII GATC 2 cut(s) 66, 414
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 6 cut(s) 61, 97, 116, 346, 403, 461
NlaIV GGNNCC 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 1 cut(s) 61
NspV TTCGAA 1 cut(s) 120
PceI AGGCCT 1 cut(s) 255
PfeI GAWTC 2 cut(s) 117, 195
PflMI CCANNNNNTGG 1 cut(s) 321
PkrI GCNGC 6 cut(s) 187, 238, 298, 301, 310, 451
Psp6I CCWGG 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 4 cut(s) 90, 128, 276, 324
PvuII CAGCTG 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 1 cut(s) 475
SatI GCNGC 6 cut(s) 186, 237, 297, 300, 309, 450
Sau3AI GATC 2 cut(s) 66, 414
Sau96I GGNCC 4 cut(s) 90, 128, 276, 324
ScrFI CCNGG 1 cut(s) 322
SetI ASST 8 cut(s) 25, 144, 241, 290, 310, 372, 438, 475
SfuI TTCGAA 1 cut(s) 120
SinI GGWCC 2 cut(s) 276, 324
SmiMI CAYNNNNRTG 1 cut(s) 62
Sse9I AATT 2 cut(s) 133, 162
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 2 cut(s) 5, 221
SspMI CTAG 3 cut(s) 41, 74, 218
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 3 cut(s) 112, 342, 399
TaaI ACNGT 2 cut(s) 280, 334
TaqI TCGA 3 cut(s) 108, 120, 366
TasI AATT 2 cut(s) 133, 162
TfiI GAWTC 2 cut(s) 117, 195
Tru1I TTAA 1 cut(s) 475
Tru9I TTAA 1 cut(s) 475
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 6 cut(s) 185, 236, 296, 299, 308, 449
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 110, 446
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 276, 324
XceI RCATGY 1 cut(s) 61
XspI CTAG 3 cut(s) 41, 74, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.