Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8239575.1

Orthogroup ID

OG0009983

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 539

Gene Structure 539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8239575.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 347 bp

atggccggtcagcagttgaaatctgtcgctggtttgcttttggttctgaacttctgcatgtatgtcattgtgctaggcatcggcggctgggccatgaatagagcaatcgaccatggtttcattattggtgctgattttaatcttcctgcgcacttctcacccatatacttcccaatggggaatgctgccactggattctttgtgacatttgctttgatcgccggagttgttggtgttgcttcagccatttctggactcaaccatcttcgttcttggacatctgatagcttgccatctgcggccgcagctgctaccattgcctggagtctcactctcctcgccatggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AWPM-19

Protein Analysis

116

Amino Acids

12.03

Weight (kDa)

6.8

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29520 AT5G46530
fragaria_vesca	FvH4_3g06430 FvH4_3g06430
malus_domestica	MD05G1292100.v1.1 MD10G1267900.v1.1
prunus_persica	Prupe.4G073300_v2.0.a1 Prupe.4G073300_v2.0.a1
pyrus_communis	pycom10g22420
rosa_chinensis	RchiOBHm_Chr5g0012871
rosa_laevigata	RLG00000031963
rosa_multiflora	Rmu_co8239575.1_g000001 Rmu_sc0002365.1_g000029 Rmu_sc0010496.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063730
rosa_rugosa	Rorug05G0004900
rosa_samantha	Rh5AG098800 Rh5BG095500 Rh5CG107700 Rh5DG094300
rosa_wichuraiana	Rw5G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	321
AciI	CCGC	3 cut(s)	84, 299, 303
AcoI	YGGCCR	2 cut(s)	3, 300
AcuI	CTGAAG	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	321, 343
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	288, 308
AluI	AGCT	2 cut(s)	288, 308
Alw26I	GTCTC	1 cut(s)	332
AoxI	GGCC	3 cut(s)	3, 90, 300
ApeKI	GCWGC	3 cut(s)	185, 305, 308
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	172, 295, 317
BccI	CCATC	2 cut(s)	270, 301
BciT130I	CCWGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	6 cut(s)	85, 186, 300, 303, 306, 309
BlsI	GCNGC	6 cut(s)	86, 187, 301, 304, 307, 310
Bme1390I	CCNGG	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	87
BplI	GAGNNNNNCTC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	343
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	112, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 343
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	315
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	112, 342
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	321, 343
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	326
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	172, 295, 317
BseYI	CCCAGC	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	5, 92, 302
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	6, 222
BslI	CCNNNNNNNGG	2 cut(s)	321, 343
BsmAI	GTCTC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	3 cut(s)	5, 92, 302
Bsp143I	GATC	1 cut(s)	216
Bsp19I	CCATGG	2 cut(s)	112, 342
BspACI	CCGC	3 cut(s)	84, 299, 303
BspANI	GGCC	3 cut(s)	5, 92, 302
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	112, 342
BssMI	GATC	1 cut(s)	216
BssT1I	CCWWGG	2 cut(s)	112, 342
Bst2UI	CCWGG	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	290
BstDSI	CCRYGG	2 cut(s)	112, 342
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	216
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 218, 305, 308, 317
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	320
BstV1I	GCAGC	3 cut(s)	172, 295, 317
BstZI	CGGCCG	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	5, 92, 302
BtgI	CCRYGG	2 cut(s)	112, 342
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	290
CciNI	GCGGCCGC	1 cut(s)	300
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	90
CviAII	CATG	4 cut(s)	58, 94, 113, 343
CviJI	RGCY	7 cut(s)	5, 87, 92, 245, 288, 302, 308
CviKI_1	RGCY	7 cut(s)	5, 87, 92, 245, 288, 302, 308
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
EaeI	YGGCCR	2 cut(s)	3, 300
EagI	CGGCCG	1 cut(s)	300
EclXI	CGGCCG	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	112, 342
Eco52I	CGGCCG	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	112, 342
ErhI	CCWWGG	2 cut(s)	112, 342
FaeI	CATG	4 cut(s)	61, 97, 116, 346
FaiI	YATR	7 cut(s)	59, 63, 95, 114, 164, 166, 344
FatI	CATG	4 cut(s)	57, 93, 112, 342
Fnu4HI	GCNGC	6 cut(s)	85, 186, 300, 303, 306, 309
Fsp4HI	GCNGC	6 cut(s)	85, 186, 300, 303, 306, 309
FspBI	CTAG	1 cut(s)	74
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	6 cut(s)	85, 186, 300, 303, 306, 309
GsaI	CCCAGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	343
HaeIII	GGCC	3 cut(s)	5, 92, 302
HapII	CCGG	2 cut(s)	6, 222
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	4 cut(s)	61, 97, 116, 346
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	195, 255, 325
HpaII	CCGG	2 cut(s)	6, 222
HphI	GGTGA	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	48, 283
Hpy188III	TCNNGA	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 218, 305, 308, 317
Hsp92II	CATG	4 cut(s)	61, 97, 116, 346
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	216
LpnPI	CCDG	9 cut(s)	15, 19, 73, 159, 177, 235, 237, 307, 334
Lsp1109I	GCAGC	3 cut(s)	172, 295, 317
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	2 cut(s)	134, 257
MlyI	GAGTC	2 cut(s)	249, 334
MnlI	CCTC	1 cut(s)	347
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	2 cut(s)	6, 222
MspR9I	CCNGG	1 cut(s)	322
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	5 cut(s)	84, 218, 305, 308, 317
NcoI	CCATGG	2 cut(s)	112, 342
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	4 cut(s)	61, 97, 116, 346
NmuCI	GTSAC	1 cut(s)	202
NotI	GCGGCCGC	1 cut(s)	300
NsbI	TGCGCA	1 cut(s)	150
NspI	RCATGY	1 cut(s)	61
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	321
PkrI	GCNGC	6 cut(s)	86, 187, 301, 304, 307, 310
PleI	GAGTC	2 cut(s)	249, 333
PpsI	GAGTC	2 cut(s)	249, 333
Psp6I	CCWGG	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	6 cut(s)	85, 186, 300, 303, 306, 309
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	2 cut(s)	249, 334
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	2 cut(s)	290, 310
SfaNI	GCATC	1 cut(s)	87
SsiI	CCGC	3 cut(s)	84, 299, 303
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	320
StyI	CCWWGG	2 cut(s)	112, 342
TaqI	TCGA	1 cut(s)	108
TauI	GCSGC	3 cut(s)	87, 302, 305
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	3 cut(s)	185, 305, 308
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	109, 110
TspRI	CASTG	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	321
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.