Rw5G008640

AWPM-19-like membrane family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0009983
Physical Location & Seq
Reverse (-)
9394425 .. 9395193
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G008640.1

Sequence Viewer

Length: 477 bp
ATGGCCGGTCAGCAGTTGAAATCTGTCGCTGGTTTGCTTTTGGTTCTGAACTTCTGCATGTATGTCATTGTGCTAGGCATCGGCGGCTGGGCCATGAATAGAGCAATCGACCATGGTTTCATTATTGGTGCTGATTTTAATCTTCCTGCGCACTTCTCACCCATATACTTCCCAATGGGGAATGCTGCCACTGGATTCTTTGTGACATTTGCTTTGATCGCCGGAGTTGTTGGTGTTGCTTCAGCCATTTCTGGACTCAACCATCTTCGTTCTTGGACATCTGATAGCTTGCCATCTGCGGCCGCAGCTGCTACCATTGCCTGGAGTCTCACTCTCCTCGCCATGGGCTTTGCTTGGAAGGAGATAGAGCTTGAAATCAGGAATGCCCGCCTGAGGACAATGGAGGCATTCTTAATCATCCTTTCAGTTACTCAGCTTCTGTATATAGCAGCCATCCATGGCATTGTATCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

158

Amino Acids

16.91

Weight (kDa)

7.98

Isoelectric Point (pI)

29.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 15 - 154 3.7e-66 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 321
AciI CCGC 4 cut(s) 84, 299, 303, 388
AcoI YGGCCR 2 cut(s) 3, 300
AcuI CTGAAG 1 cut(s) 225
AfiI CCNNNNNNNGG 3 cut(s) 321, 343, 393
AgsI TTSAA 2 cut(s) 19, 374
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 4 cut(s) 288, 308, 370, 436
AluI AGCT 4 cut(s) 288, 308, 370, 436
Alw26I GTCTC 1 cut(s) 332
AlwNI CAGNNNCTG 1 cut(s) 439
AoxI GGCC 3 cut(s) 3, 90, 300
ApeKI GCWGC 4 cut(s) 185, 305, 308, 449
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 150
AxyI CCTNAGG 1 cut(s) 392
BbvI GCAGC 4 cut(s) 172, 295, 317, 461
BccI CCATC 3 cut(s) 270, 301, 461
BciT130I CCWGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 74
BisI GCNGC 7 cut(s) 85, 186, 300, 303, 306, 309, 450
BlsI GCNGC 7 cut(s) 86, 187, 301, 304, 307, 310, 451
Bme1390I CCNGG 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 112, 342, 457
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 343, 393
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 196
Bse21I CCTNAGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 3 cut(s) 112, 342, 457
BseGI GGATG 2 cut(s) 417, 453
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 3 cut(s) 321, 343, 393
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 2 cut(s) 383, 446
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 326
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 4 cut(s) 172, 295, 317, 461
BseYI CCCAGC 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 3 cut(s) 5, 92, 302
BsiEI CGRYCG 1 cut(s) 303
BsiSI CCGG 2 cut(s) 6, 222
BslI CCNNNNNNNGG 3 cut(s) 321, 343, 393
BsmAI GTCTC 1 cut(s) 332
BsmI GAATGC 3 cut(s) 187, 388, 407
BsnI GGCC 3 cut(s) 5, 92, 302
Bsp143I GATC 1 cut(s) 216
Bsp19I CCATGG 3 cut(s) 112, 342, 457
BspACI CCGC 4 cut(s) 84, 299, 303, 388
BspANI GGCC 3 cut(s) 5, 92, 302
BspCNI CTCAG 2 cut(s) 384, 445
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 3 cut(s) 112, 342, 457
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 3 cut(s) 112, 342, 457
Bst2UI CCWGG 1 cut(s) 322
BstC8I GCNNGC 2 cut(s) 290, 388
BstDEI CTNAG 2 cut(s) 392, 432
BstDSI CCRYGG 3 cut(s) 112, 342, 457
BstF5I GGATG 2 cut(s) 417, 453
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 216
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 5 cut(s) 84, 218, 305, 308, 317
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 320
BstV1I GCAGC 4 cut(s) 172, 295, 317, 461
BstZI CGGCCG 1 cut(s) 300
Bsu36I CCTNAGG 1 cut(s) 392
BsuRI GGCC 3 cut(s) 5, 92, 302
BtgI CCRYGG 3 cut(s) 112, 342, 457
BtsCI GGATG 2 cut(s) 417, 453
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 290, 388
CaiI CAGNNNCTG 1 cut(s) 439
CciNI GCGGCCGC 1 cut(s) 300
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 90
CviAII CATG 5 cut(s) 58, 94, 113, 343, 458
DdeI CTNAG 2 cut(s) 392, 432
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EaeI YGGCCR 2 cut(s) 3, 300
EagI CGGCCG 1 cut(s) 300
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 3 cut(s) 112, 342, 457
Eco52I CGGCCG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 225
Eco81I CCTNAGG 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 3 cut(s) 112, 342, 457
ErhI CCWWGG 3 cut(s) 112, 342, 457
FaeI CATG 5 cut(s) 61, 97, 116, 346, 461
FatI CATG 5 cut(s) 57, 93, 112, 342, 457
FauI CCCGC 1 cut(s) 395
Fnu4HI GCNGC 7 cut(s) 85, 186, 300, 303, 306, 309, 450
FokI GGATG 2 cut(s) 404, 440
Fsp4HI GCNGC 7 cut(s) 85, 186, 300, 303, 306, 309, 450
FspBI CTAG 1 cut(s) 74
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 1 cut(s) 150
GluI GCNGC 7 cut(s) 85, 186, 300, 303, 306, 309, 450
GsaI CCCAGC 1 cut(s) 91
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 3 cut(s) 5, 92, 302
HapII CCGG 2 cut(s) 6, 222
HhaI GCGC 1 cut(s) 151
Hin1II CATG 5 cut(s) 61, 97, 116, 346, 461
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 3 cut(s) 195, 255, 325
HpaII CCGG 2 cut(s) 6, 222
HphI GGTGA 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 48, 283
Hpy188III TCNNGA 3 cut(s) 252, 379, 471
HpyAV CCTTC 1 cut(s) 352
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 218, 305, 308, 317
HpyF3I CTNAG 2 cut(s) 392, 432
Hsp92II CATG 5 cut(s) 61, 97, 116, 346, 461
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 216
Lsp1109I GCAGC 4 cut(s) 172, 295, 317, 461
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 202, 427
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 2 cut(s) 134, 257
MlyI GAGTC 2 cut(s) 249, 334
MnlI CCTC 3 cut(s) 347, 387, 397
MseI TTAA 2 cut(s) 138, 413
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 2 cut(s) 6, 222
MspR9I CCNGG 1 cut(s) 322
Mva1269I GAATGC 3 cut(s) 187, 388, 407
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 5 cut(s) 84, 218, 305, 308, 317
NcoI CCATGG 3 cut(s) 112, 342, 457
NdeII GATC 1 cut(s) 216
NlaIII CATG 5 cut(s) 61, 97, 116, 346, 461
NmuCI GTSAC 1 cut(s) 202
NotI GCGGCCGC 1 cut(s) 300
NsbI TGCGCA 1 cut(s) 150
NspI RCATGY 1 cut(s) 61
PctI GAATGC 3 cut(s) 187, 388, 407
PfeI GAWTC 1 cut(s) 195
PflMI CCANNNNNTGG 1 cut(s) 321
PkrI GCNGC 7 cut(s) 86, 187, 301, 304, 307, 310, 451
PleI GAGTC 2 cut(s) 249, 333
PpsI GAGTC 2 cut(s) 249, 333
Psp6I CCWGG 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 1 cut(s) 320
PspPI GGNCC 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 308
SaqAI TTAA 2 cut(s) 138, 413
SatI GCNGC 7 cut(s) 85, 186, 300, 303, 306, 309, 450
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 2 cut(s) 249, 334
ScrFI CCNGG 1 cut(s) 322
SetI ASST 4 cut(s) 290, 310, 372, 438
SfaNI GCATC 1 cut(s) 87
SsiI CCGC 4 cut(s) 84, 299, 303, 388
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 3 cut(s) 112, 342, 457
TaqI TCGA 1 cut(s) 108
TauI GCSGC 3 cut(s) 87, 302, 305
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 138, 413
Tru9I TTAA 2 cut(s) 138, 413
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 4 cut(s) 185, 305, 308, 449
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 109, 110
TspRI CASTG 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 321
XceI RCATGY 1 cut(s) 61
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.