FvH4_3g06430

AWPM-19-like membrane family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009983
Physical Location & Seq
Forward (+)
3693900 .. 3694990
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06430.t2

Sequence Viewer

Length: 498 bp
ATGGCCGGTCAGCAGTTAAAATCTGTCGCTGGTTTGCTTTTGGTTCTGAATTTCTGCATGTATGTCATTGTGCTAGGCATCGGCGGCTGGGCCATGAATAGAGCAATCGACCATGGTTTCATTATCGGTGCTGATTATAATCTTCCTGCGCACTTCTCACCCATATACTTCCCAATGGGGAATGCTGCCACTGGATTCTTCGTAACATTTGCTTTGATCGCCGGAGTTGTTGGTGTTGCTTCAGCCATTTCTGGACTCAACCATCTTCGTTCTTGGACATATGATAGCTTGCCATCTGCAGCCGCAGCTGCTACAATTGCCTGGACTCTCACTCTCCTCGCCATGGGCTTTGCTTGGAAGGAGATAGAGCTTGAAATCAGGAATGCTCGTCTGAGGACAATGGAGGCGTTCCTAATCATCCTTTCAGTTACTCAGCTTCTGTATATAGCAGCCATCCATGGCTCTGTATCAGCCATCCATGGCCCTGTATCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

166

Amino Acids

17.65

Weight (kDa)

7.97

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 15 - 116 8.5e-46 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
Acc16I TGCGCA 1 cut(s) 150
AciI CCGC 2 cut(s) 84, 303
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 1 cut(s) 374
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 4 cut(s) 288, 308, 370, 436
AluI AGCT 4 cut(s) 288, 308, 370, 436
AlwNI CAGNNNCTG 1 cut(s) 439
AoxI GGCC 3 cut(s) 3, 90, 481
ApeKI GCWGC 5 cut(s) 185, 299, 305, 308, 449
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 90, 482
AsuHPI GGTGA 1 cut(s) 150
BbvI GCAGC 5 cut(s) 172, 295, 311, 317, 461
BccI CCATC 4 cut(s) 270, 301, 461, 482
BciT130I CCWGG 1 cut(s) 322
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 297
BisI GCNGC 7 cut(s) 85, 186, 300, 303, 306, 309, 450
BlsI GCNGC 7 cut(s) 86, 187, 301, 304, 307, 310, 451
Bme1390I CCNGG 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 90, 482
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 4 cut(s) 112, 342, 457, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 4 cut(s) 112, 342, 457, 478
BseGI GGATG 3 cut(s) 417, 453, 474
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 383, 446
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 5 cut(s) 172, 295, 311, 317, 461
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 3 cut(s) 5, 92, 483
BsiSI CCGG 2 cut(s) 6, 222
BslI CCNNNNNNNGG 1 cut(s) 343
BsmI GAATGC 2 cut(s) 187, 388
BsnI GGCC 3 cut(s) 5, 92, 483
Bsp143I GATC 1 cut(s) 216
Bsp19I CCATGG 4 cut(s) 112, 342, 457, 478
BspACI CCGC 2 cut(s) 84, 303
BspANI GGCC 3 cut(s) 5, 92, 483
BspCNI CTCAG 2 cut(s) 384, 445
BspMAI CTGCAG 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 4 cut(s) 112, 342, 457, 478
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 4 cut(s) 112, 342, 457, 478
Bst2UI CCWGG 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 2 cut(s) 392, 432
BstDSI CCRYGG 4 cut(s) 112, 342, 457, 478
BstF5I GGATG 3 cut(s) 417, 453, 474
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 5 cut(s) 84, 218, 305, 308, 317
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 5 cut(s) 172, 295, 311, 317, 461
BsuRI GGCC 3 cut(s) 5, 92, 483
BtgI CCRYGG 4 cut(s) 112, 342, 457, 478
BtsCI GGATG 3 cut(s) 417, 453, 474
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 290
CaiI CAGNNNCTG 1 cut(s) 439
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 2 cut(s) 90, 482
CviAII CATG 6 cut(s) 58, 94, 113, 343, 458, 479
DdeI CTNAG 2 cut(s) 392, 432
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 4 cut(s) 112, 342, 457, 478
Eco57I CTGAAG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 4 cut(s) 112, 342, 457, 478
ErhI CCWWGG 4 cut(s) 112, 342, 457, 478
FaeI CATG 6 cut(s) 61, 97, 116, 346, 461, 482
FatI CATG 6 cut(s) 57, 93, 112, 342, 457, 478
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 7 cut(s) 85, 186, 300, 303, 306, 309, 450
FokI GGATG 3 cut(s) 404, 440, 461
Fsp4HI GCNGC 7 cut(s) 85, 186, 300, 303, 306, 309, 450
FspBI CTAG 1 cut(s) 74
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 1 cut(s) 150
GluI GCNGC 7 cut(s) 85, 186, 300, 303, 306, 309, 450
GsaI CCCAGC 1 cut(s) 91
HaeIII GGCC 3 cut(s) 5, 92, 483
HapII CCGG 2 cut(s) 6, 222
HhaI GCGC 1 cut(s) 151
Hin1II CATG 6 cut(s) 61, 97, 116, 346, 461, 482
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 3 cut(s) 195, 255, 325
HpaII CCGG 2 cut(s) 6, 222
HphI GGTGA 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 48, 393
Hpy188III TCNNGA 3 cut(s) 252, 379, 492
HpyAV CCTTC 1 cut(s) 352
HpyCH4V TGCA 2 cut(s) 57, 299
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 218, 305, 308, 317
HpyF3I CTNAG 2 cut(s) 392, 432
Hsp92II CATG 6 cut(s) 61, 97, 116, 346, 461, 482
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 216
Lsp1109I GCAGC 5 cut(s) 172, 295, 311, 317, 461
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 202, 427
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 3 cut(s) 134, 190, 257
MfeI CAATTG 1 cut(s) 315
MluCI AATT 2 cut(s) 49, 315
MlyI GAGTC 2 cut(s) 249, 319
MnlI CCTC 3 cut(s) 347, 387, 397
MseI TTAA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 2 cut(s) 6, 222
MspR9I CCNGG 1 cut(s) 322
MunI CAATTG 1 cut(s) 315
Mva1269I GAATGC 2 cut(s) 187, 388
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 5 cut(s) 84, 218, 305, 308, 317
NcoI CCATGG 4 cut(s) 112, 342, 457, 478
NdeI CATATG 1 cut(s) 280
NdeII GATC 1 cut(s) 216
NlaIII CATG 6 cut(s) 61, 97, 116, 346, 461, 482
NsbI TGCGCA 1 cut(s) 150
NspI RCATGY 1 cut(s) 61
PctI GAATGC 2 cut(s) 187, 388
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 7 cut(s) 86, 187, 301, 304, 307, 310, 451
PleI GAGTC 2 cut(s) 249, 319
PpsI GAGTC 2 cut(s) 249, 319
PsiI TTATAA 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 1 cut(s) 320
PspPI GGNCC 2 cut(s) 90, 482
PstI CTGCAG 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 7 cut(s) 85, 186, 300, 303, 306, 309, 450
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 2 cut(s) 90, 482
SchI GAGTC 2 cut(s) 249, 319
ScrFI CCNGG 1 cut(s) 322
SetI ASST 4 cut(s) 290, 310, 372, 438
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 297
Sse9I AATT 2 cut(s) 49, 315
SsiI CCGC 2 cut(s) 84, 303
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 4 cut(s) 112, 342, 457, 478
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 49, 315
TauI GCSGC 2 cut(s) 87, 305
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 196
TseI GCWGC 5 cut(s) 185, 299, 305, 308, 449
TspDTI ATGAA 2 cut(s) 109, 110
TspRI CASTG 1 cut(s) 196
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 61
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.