Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009983

Physical Location & Seq

Genomic Coordinates Reverse (-)

3585854 .. 3587064

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G073300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCCAACCAGCAGTTAAAGTCTGTTGCTGGCCTGCTTTTGCTTCTCAATTTCTGCATGTATGTCATTGTGTTGGGCATTGGAGGCTGGGCCATGAACAGAGCTATTGACCATGGTTTCATTATTGGTCCTGGTTTTGATCTCCCAGCACATTTCTCACCCATATACTTCCCAATGGGAAATGCTGCAACCGGGTTCTTTGTAACATTCGCTTTGATTGCCGGAGTTGTTGGTGCTGCTTCAGCCATTTCCGGAATCAACCATATTCGATCTTGGACAGCTGATAGCTTGCCATCTGCAGCCGCAGCTGCTACCGTTGCCTGGACCCTCACCCTCCTTGCCATGGGCTTTGCTTGCAAGGAGATAGAGCTTCGTATCAGAAATGCCCGTCTGAGAACACTGGAGGCATTCTTGATCATCCTTTCAGCTACGCAGCTTCTGTATATAGCAGCCATTCATAGTGCTGCATCAAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AWPM-19

Protein Analysis

160

Amino Acids

16.92

Weight (kDa)

9.58

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29520 AT5G46530
fragaria_vesca	FvH4_3g06430 FvH4_3g06430
malus_domestica	MD05G1292100.v1.1 MD10G1267900.v1.1
prunus_persica	Prupe.4G073300_v2.0.a1 Prupe.4G073300_v2.0.a1
pyrus_communis	pycom10g22420
rosa_chinensis	RchiOBHm_Chr5g0012871
rosa_laevigata	RLG00000031963
rosa_multiflora	Rmu_co8239575.1_g000001 Rmu_sc0002365.1_g000029 Rmu_sc0010496.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063730
rosa_rugosa	Rorug05G0004900
rosa_samantha	Rh5AG098800 Rh5BG095500 Rh5CG107700 Rh5DG094300
rosa_wichuraiana	Rw5G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	251
AciI	CCGC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	321, 343
AjnI	CCWGG	2 cut(s)	130, 320
AluBI	AGCT	7 cut(s)	104, 281, 288, 308, 370, 428, 436
AluI	AGCT	7 cut(s)	104, 281, 288, 308, 370, 428, 436
AlwNI	CAGNNNCTG	1 cut(s)	439
Aor13HI	TCCGGA	1 cut(s)	251
AoxI	GGCC	3 cut(s)	3, 31, 90
ApeKI	GCWGC	8 cut(s)	185, 236, 299, 305, 308, 433, 449, 464
AspS9I	GGNCC	3 cut(s)	90, 128, 324
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	150, 322
AvaII	GGWCC	2 cut(s)	128, 324
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	8 cut(s)	172, 223, 295, 311, 317, 445, 451, 461
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	2 cut(s)	132, 322
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	9 cut(s)	186, 237, 300, 303, 306, 309, 434, 450, 465
BlsI	GCNGC	9 cut(s)	187, 238, 301, 304, 307, 310, 435, 451, 466
Bme1390I	CCNGG	3 cut(s)	132, 193, 322
Bme18I	GGWCC	2 cut(s)	128, 324
BmgT120I	GGNCC	3 cut(s)	90, 128, 324
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	3 cut(s)	132, 193, 322
BmsI	GCATC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	112, 342
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 343
Bse1I	ACTGG	1 cut(s)	405
BseAI	TCCGGA	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	132, 322
BseDI	CCNNGG	2 cut(s)	112, 342
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	321, 343
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	405
BseXI	GCAGC	8 cut(s)	172, 223, 295, 311, 317, 445, 451, 461
BseYI	CCCAGC	2 cut(s)	87, 145
BshFI	GGCC	3 cut(s)	5, 33, 92
BsiSI	CCGG	3 cut(s)	192, 222, 252
BslI	CCNNNNNNNGG	2 cut(s)	321, 343
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	3 cut(s)	5, 33, 92
Bsp13I	TCCGGA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	139, 269, 414
Bsp19I	CCATGG	2 cut(s)	112, 342
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	3 cut(s)	5, 33, 92
BspCNI	CTCAG	1 cut(s)	384
BspEI	TCCGGA	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	326
BspMAI	CTGCAG	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	112, 342
BssMI	GATC	3 cut(s)	139, 269, 414
BssT1I	CCWWGG	2 cut(s)	112, 342
Bst2UI	CCWGG	2 cut(s)	132, 322
Bst4CI	ACNGT	1 cut(s)	316
BstC8I	GCNNGC	4 cut(s)	31, 35, 290, 355
BstDEI	CTNAG	1 cut(s)	392
BstDSI	CCRYGG	2 cut(s)	112, 342
BstF5I	GGATG	1 cut(s)	417
BstKTI	GATC	3 cut(s)	142, 272, 417
BstMBI	GATC	3 cut(s)	139, 269, 414
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 218, 242, 305, 308, 317, 354
BstNI	CCWGG	2 cut(s)	132, 322
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	3 cut(s)	130, 191, 320
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	8 cut(s)	172, 223, 295, 311, 317, 445, 451, 461
BsuRI	GGCC	3 cut(s)	5, 33, 92
BtgI	CCRYGG	2 cut(s)	112, 342
BtsCI	GGATG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	398
Cac8I	GCNNGC	4 cut(s)	31, 35, 290, 355
CaiI	CAGNNNCTG	1 cut(s)	439
Cfr13I	GGNCC	3 cut(s)	90, 128, 324
CviAII	CATG	4 cut(s)	58, 94, 113, 343
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	3 cut(s)	141, 271, 416
DpnII	GATC	3 cut(s)	139, 269, 414
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	112, 342
Eco47I	GGWCC	2 cut(s)	128, 324
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	130, 320
EcoT14I	CCWWGG	2 cut(s)	112, 342
ErhI	CCWWGG	2 cut(s)	112, 342
FaeI	CATG	4 cut(s)	61, 97, 116, 346
FatI	CATG	4 cut(s)	57, 93, 112, 342
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	9 cut(s)	186, 237, 300, 303, 306, 309, 434, 450, 465
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	9 cut(s)	186, 237, 300, 303, 306, 309, 434, 450, 465
GluI	GCNGC	9 cut(s)	186, 237, 300, 303, 306, 309, 434, 450, 465
GsaI	CCCAGC	2 cut(s)	91, 149
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	5, 33, 92
HapII	CCGG	3 cut(s)	192, 222, 252
Hin1II	CATG	4 cut(s)	61, 97, 116, 346
HinfI	GANTC	1 cut(s)	255
HpaII	CCGG	3 cut(s)	192, 222, 252
HphI	GGTGA	2 cut(s)	150, 322
Hpy188I	TCNGA	2 cut(s)	380, 393
Hpy188III	TCNNGA	2 cut(s)	252, 412
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	57, 188, 299, 357, 467
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 218, 242, 305, 308, 317, 354
HpyF3I	CTNAG	1 cut(s)	392
Hsp92II	CATG	4 cut(s)	61, 97, 116, 346
Kpn2I	TCCGGA	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	3 cut(s)	139, 269, 414
Lsp1109I	GCAGC	8 cut(s)	172, 223, 295, 311, 317, 445, 451, 461
LweI	GCATC	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	3 cut(s)	141, 271, 416
MboI	GATC	3 cut(s)	139, 269, 414
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	49
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	77, 338, 344, 397
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	281, 308
MspI	CCGG	3 cut(s)	192, 222, 252
MspR9I	CCNGG	3 cut(s)	132, 193, 322
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	2 cut(s)	132, 322
MwoI	GCNNNNNNNGC	7 cut(s)	84, 218, 242, 305, 308, 317, 354
NciI	CCSGG	1 cut(s)	193
NcoI	CCATGG	2 cut(s)	112, 342
NdeII	GATC	3 cut(s)	139, 269, 414
NlaIII	CATG	4 cut(s)	61, 97, 116, 346
NlaIV	GGNNCC	1 cut(s)	326
NspI	RCATGY	1 cut(s)	61
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	255
PkrI	GCNGC	9 cut(s)	187, 238, 301, 304, 307, 310, 435, 451, 466
Psp6I	CCWGG	2 cut(s)	130, 320
PspFI	CCCAGC	2 cut(s)	87, 145
PspGI	CCWGG	2 cut(s)	130, 320
PspN4I	GGNNCC	1 cut(s)	326
PspPI	GGNCC	3 cut(s)	90, 128, 324
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	439
PvuII	CAGCTG	2 cut(s)	281, 308
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	9 cut(s)	186, 237, 300, 303, 306, 309, 434, 450, 465
Sau3AI	GATC	3 cut(s)	139, 269, 414
Sau96I	GGNCC	3 cut(s)	90, 128, 324
ScrFI	CCNGG	3 cut(s)	132, 193, 322
SetI	ASST	7 cut(s)	106, 283, 290, 310, 372, 430, 438
SfaNI	GCATC	1 cut(s)	476
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	2 cut(s)	128, 324
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	130, 191, 320
StyI	CCWWGG	2 cut(s)	112, 342
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	268
TasI	AATT	1 cut(s)	49
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	405
TseI	GCWGC	8 cut(s)	185, 236, 299, 305, 308, 433, 449, 464
TspDTI	ATGAA	3 cut(s)	109, 110, 446
TspRI	CASTG	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	128, 324
XceI	RCATGY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.