Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009983

Physical Location & Seq

Genomic Coordinates Forward (+)

24780883 .. 24781682

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCCAACCAGCAGTTAAAACCCGTTGCCGGACTGCTTTTGGCTCTCAATTTCTGTATGTATGTCATCGTTTTGGGCATTGGAGGTTGGGCAATGAACCGAGCAATCGACCACGGTTTTGTTATTGGTCCTGGTTTTGATCTCCCGGCACATTTTTCGCCAATATATTTCCCCATGGGCAATGCTGCTACCGGGTTCTTTGTGACATTCGCTCTGCTCGCTGGAGTTGTTGGCGTAGCTTCAGCTATTTCCGGTATCAACCATCTTCGATCTTGGACCCATGAGAGCTTGCCGTCTGCAGCCACAGCTGCCACCATTGCCTGGACCCTCACCCTACTTGCCATGAGCTTCGGTTGCAAGGAGATCGAGCTTCGGATCAGAAATTCCCGATTGAGAACAATGGAGGCCTTCTTGATCATCCTTTCGGTGACGCAGCTTCTGTATTTAGCAGTCATTCATACCGTTGTATCGAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AWPM-19

Protein Analysis

160

Amino Acids

17.2

Weight (kDa)

9.58

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29520 AT5G46530
fragaria_vesca	FvH4_3g06430 FvH4_3g06430
malus_domestica	MD05G1292100.v1.1 MD10G1267900.v1.1
prunus_persica	Prupe.4G073300_v2.0.a1 Prupe.4G073300_v2.0.a1
pyrus_communis	pycom10g22420
rosa_chinensis	RchiOBHm_Chr5g0012871
rosa_laevigata	RLG00000031963
rosa_multiflora	Rmu_co8239575.1_g000001 Rmu_sc0002365.1_g000029 Rmu_sc0010496.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063730
rosa_rugosa	Rorug05G0004900
rosa_samantha	Rh5AG098800 Rh5BG095500 Rh5CG107700 Rh5DG094300
rosa_wichuraiana	Rw5G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	321
AclWI	GGATC	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	29, 321
AjnI	CCWGG	2 cut(s)	130, 320
AluBI	AGCT	7 cut(s)	239, 245, 288, 308, 348, 370, 436
AluI	AGCT	7 cut(s)	239, 245, 288, 308, 348, 370, 436
AlwI	GGATC	1 cut(s)	383
AlwNI	CAGNNNCTG	1 cut(s)	439
AoxI	GGCC	2 cut(s)	3, 405
ApeKI	GCWGC	4 cut(s)	185, 299, 308, 433
ApoI	RAATTY	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspS9I	GGNCC	3 cut(s)	128, 276, 324
AsuC2I	CCSGG	2 cut(s)	146, 193
AsuHPI	GGTGA	2 cut(s)	322, 439
AvaII	GGWCC	3 cut(s)	128, 276, 324
BaeI	ACNNNNGTAYC	1 cut(s)	450
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	172, 295, 311, 445
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	1 cut(s)	277
BcgI	CGANNNNNNTGC	4 cut(s)	138, 172, 346, 380
BciT130I	CCWGG	2 cut(s)	132, 322
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	2 cut(s)	146, 193
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	4 cut(s)	186, 300, 309, 434
BlsI	GCNGC	4 cut(s)	187, 301, 310, 435
Bme1390I	CCNGG	4 cut(s)	132, 146, 193, 322
Bme18I	GGWCC	3 cut(s)	128, 276, 324
BmgT120I	GGNCC	3 cut(s)	128, 276, 324
BmiI	GGNNCC	2 cut(s)	278, 326
BmrFI	CCNGG	4 cut(s)	132, 146, 193, 322
BpmI	CTGGAG	1 cut(s)	243
BpuMI	CCSGG	2 cut(s)	146, 193
BsaJI	CCNNGG	2 cut(s)	112, 174
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 321
Bse3DI	GCAATG	3 cut(s)	99, 187, 315
BseBI	CCWGG	2 cut(s)	132, 322
BseDI	CCNNGG	2 cut(s)	112, 174
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	29, 321
BseMI	GCAATG	3 cut(s)	99, 187, 315
BseXI	GCAGC	4 cut(s)	172, 295, 311, 445
BshFI	GGCC	2 cut(s)	5, 407
BsiSI	CCGG	4 cut(s)	30, 146, 192, 252
BslI	CCNNNNNNNGG	2 cut(s)	29, 321
BsnI	GGCC	2 cut(s)	5, 407
Bsp143I	GATC	5 cut(s)	139, 269, 363, 375, 414
Bsp19I	CCATGG	1 cut(s)	174
BspANI	GGCC	2 cut(s)	5, 407
BspLI	GGNNCC	2 cut(s)	278, 326
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	383
BsrDI	GCAATG	3 cut(s)	99, 187, 315
BssECI	CCNNGG	2 cut(s)	112, 174
BssMI	GATC	5 cut(s)	139, 269, 363, 375, 414
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	132, 322
Bst4CI	ACNGT	2 cut(s)	116, 463
BstC8I	GCNNGC	2 cut(s)	219, 290
BstDSI	CCRYGG	2 cut(s)	112, 174
BstF5I	GGATG	1 cut(s)	417
BstKTI	GATC	5 cut(s)	142, 272, 366, 378, 417
BstMBI	GATC	5 cut(s)	139, 269, 363, 375, 414
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 305, 308, 317, 354
BstNI	CCWGG	2 cut(s)	132, 322
BstSCI	CCNGG	4 cut(s)	130, 144, 191, 320
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	4 cut(s)	172, 295, 311, 445
BsuRI	GGCC	2 cut(s)	5, 407
BtgI	CCRYGG	2 cut(s)	112, 174
BtsCI	GGATG	1 cut(s)	417
Cac8I	GCNNGC	2 cut(s)	219, 290
CaiI	CAGNNNCTG	1 cut(s)	439
Cfr13I	GGNCC	3 cut(s)	128, 276, 324
CseI	GACGC	1 cut(s)	439
CviAII	CATG	3 cut(s)	175, 281, 343
DpnI	GATC	5 cut(s)	141, 271, 365, 377, 416
DpnII	GATC	5 cut(s)	139, 269, 363, 375, 414
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	407
Eco47I	GGWCC	3 cut(s)	128, 276, 324
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	130, 320
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	178, 284, 346
FaiI	YATR	7 cut(s)	59, 63, 166, 176, 282, 344, 459
FatI	CATG	3 cut(s)	174, 280, 342
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	4 cut(s)	186, 300, 309, 434
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	4 cut(s)	186, 300, 309, 434
GluI	GCNGC	4 cut(s)	186, 300, 309, 434
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	5, 407
HapII	CCGG	4 cut(s)	30, 146, 192, 252
HgaI	GACGC	1 cut(s)	439
Hin1II	CATG	3 cut(s)	178, 284, 346
HpaII	CCGG	4 cut(s)	30, 146, 192, 252
HphI	GGTGA	2 cut(s)	322, 439
Hpy188I	TCNGA	2 cut(s)	375, 380
Hpy188III	TCNNGA	2 cut(s)	387, 412
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	2 cut(s)	116, 463
HpyCH4V	TGCA	2 cut(s)	299, 357
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 305, 308, 317, 354
Hsp92II	CATG	3 cut(s)	178, 284, 346
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	5 cut(s)	139, 269, 363, 375, 414
Lsp1109I	GCAGC	4 cut(s)	172, 295, 311, 445
MaeIII	GTNAC	2 cut(s)	202, 427
MalI	GATC	5 cut(s)	141, 271, 365, 377, 416
MboI	GATC	5 cut(s)	139, 269, 363, 375, 414
MboII	GAAGA	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	49, 382
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	77, 338, 397, 465
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	4 cut(s)	30, 146, 192, 252
MspR9I	CCNGG	4 cut(s)	132, 146, 193, 322
MvaI	CCWGG	2 cut(s)	132, 322
MwoI	GCNNNNNNNGC	5 cut(s)	218, 305, 308, 317, 354
NciI	CCSGG	2 cut(s)	146, 193
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	139, 269, 363, 375, 414
NlaIII	CATG	3 cut(s)	178, 284, 346
NlaIV	GGNNCC	2 cut(s)	278, 326
NmuCI	GTSAC	2 cut(s)	202, 427
PceI	AGGCCT	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	321
PkrI	GCNGC	4 cut(s)	187, 301, 310, 435
Psp6I	CCWGG	2 cut(s)	130, 320
PspGI	CCWGG	2 cut(s)	130, 320
PspN4I	GGNNCC	2 cut(s)	278, 326
PspPI	GGNCC	3 cut(s)	128, 276, 324
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	4 cut(s)	186, 300, 309, 434
Sau3AI	GATC	5 cut(s)	139, 269, 363, 375, 414
Sau96I	GGNCC	3 cut(s)	128, 276, 324
ScrFI	CCNGG	4 cut(s)	132, 146, 193, 322
SetI	ASST	8 cut(s)	88, 241, 247, 290, 310, 350, 372, 438
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	3 cut(s)	128, 276, 324
Sse9I	AATT	2 cut(s)	49, 382
SseBI	AGGCCT	1 cut(s)	407
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	4 cut(s)	130, 144, 191, 320
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	116, 463
TaqI	TCGA	4 cut(s)	108, 268, 366, 470
TasI	AATT	2 cut(s)	49, 382
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseFI	GTSAC	2 cut(s)	202, 427
TseI	GCWGC	4 cut(s)	185, 299, 308, 433
Tsp45I	GTSAC	2 cut(s)	202, 427
TspDTI	ATGAA	2 cut(s)	110, 446
Van91I	CCANNNNNTGG	1 cut(s)	321
VpaK11BI	GGWCC	3 cut(s)	128, 276, 324
XapI	RAATTY	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.