Rh5CG107700

AWPM-19-like membrane family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0009983
Physical Location & Seq
Reverse (-)
8884591 .. 8890798
6208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG107700.1

Sequence Viewer

Length: 432 bp
ATGGCCGGTCAGCAGTTGAAATCTGTCGCTGGTTTGCTTTTGGTTCTGAACTTCTGCATGTATGTCATTGTGCTAGGCATCGGCGGCTGGGCCATGAATAGAGCAATCGACCATGGTTTCATTATTGGTGCTGATTTTAATCTTCCTGCGCACTTCTCACCCATATACTTCCCAATGGGGAATGCTGCCACTGGATTCTTTGTGACATTTGCTTTGATCGCCGGAGTTGTTGGTGTTGCTTCAGCCATTTCTGGACTCAACCATCTTCGTTCTTGGACATCTGATAGCTTGCCATCTGCGGCCGCAGCTGCTACCATTGCCTGGACTCTCACTCTCCTCGCCATGGGGTACCTTACTCATTTCATTTCCTTTGTTTTCCTTGATAACCTTCAAGATCACATAATATCTTCTTTTATGTTAACAAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

143

Amino Acids

15.28

Weight (kDa)

6.47

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 15 - 120 3e-46 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 150
Acc65I GGTACC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 321
AciI CCGC 3 cut(s) 84, 299, 303
AcoI YGGCCR 2 cut(s) 3, 300
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 321, 343
AgsI TTSAA 2 cut(s) 19, 392
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 2 cut(s) 288, 308
AluI AGCT 2 cut(s) 288, 308
AoxI GGCC 3 cut(s) 3, 90, 300
ApeKI GCWGC 3 cut(s) 185, 305, 308
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
Asp718I GGTACC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 150
BanI GGYRCC 1 cut(s) 348
BbvI GCAGC 3 cut(s) 172, 295, 317
BccI CCATC 2 cut(s) 270, 301
BciT130I CCWGG 1 cut(s) 322
BfaI CTAG 1 cut(s) 74
BisI GCNGC 6 cut(s) 85, 186, 300, 303, 306, 309
BlsI GCNGC 6 cut(s) 86, 187, 301, 304, 307, 310
Bme1390I CCNGG 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 112, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 343
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 112, 342
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 321, 343
BseMI GCAATG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 326
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 3 cut(s) 172, 295, 317
BseYI CCCAGC 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 3 cut(s) 5, 92, 302
BshNI GGYRCC 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 303
BsiSI CCGG 2 cut(s) 6, 222
BslI CCNNNNNNNGG 2 cut(s) 321, 343
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 3 cut(s) 5, 92, 302
Bsp143I GATC 2 cut(s) 216, 394
Bsp19I CCATGG 2 cut(s) 112, 342
BspACI CCGC 3 cut(s) 84, 299, 303
BspANI GGCC 3 cut(s) 5, 92, 302
BspLI GGNNCC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 112, 342
BssMI GATC 2 cut(s) 216, 394
BssT1I CCWWGG 2 cut(s) 112, 342
Bst2UI CCWGG 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 290
BstDSI CCRYGG 2 cut(s) 112, 342
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 2 cut(s) 219, 397
BstMBI GATC 2 cut(s) 216, 394
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 5 cut(s) 84, 218, 305, 308, 317
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 320
BstV1I GCAGC 3 cut(s) 172, 295, 317
BstZI CGGCCG 1 cut(s) 300
BsuRI GGCC 3 cut(s) 5, 92, 302
BtgI CCRYGG 2 cut(s) 112, 342
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 290
CciNI GCGGCCGC 1 cut(s) 300
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 349
CviAII CATG 4 cut(s) 58, 94, 113, 343
CviJI RGCY 7 cut(s) 5, 87, 92, 245, 288, 302, 308
CviKI_1 RGCY 7 cut(s) 5, 87, 92, 245, 288, 302, 308
CviQI GTAC 1 cut(s) 349
DpnI GATC 2 cut(s) 218, 396
DpnII GATC 2 cut(s) 216, 394
EaeI YGGCCR 2 cut(s) 3, 300
EagI CGGCCG 1 cut(s) 300
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 2 cut(s) 112, 342
Eco52I CGGCCG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 112, 342
ErhI CCWWGG 2 cut(s) 112, 342
FaeI CATG 4 cut(s) 61, 97, 116, 346
FatI CATG 4 cut(s) 57, 93, 112, 342
Fnu4HI GCNGC 6 cut(s) 85, 186, 300, 303, 306, 309
Fsp4HI GCNGC 6 cut(s) 85, 186, 300, 303, 306, 309
FspBI CTAG 1 cut(s) 74
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 1 cut(s) 150
GluI GCNGC 6 cut(s) 85, 186, 300, 303, 306, 309
GsaI CCCAGC 1 cut(s) 91
HaeIII GGCC 3 cut(s) 5, 92, 302
HapII CCGG 2 cut(s) 6, 222
HhaI GCGC 1 cut(s) 151
Hin1II CATG 4 cut(s) 61, 97, 116, 346
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HinfI GANTC 3 cut(s) 195, 255, 325
HpaI GTTAAC 1 cut(s) 420
HpaII CCGG 2 cut(s) 6, 222
HphI GGTGA 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 2 cut(s) 48, 283
Hpy188III TCNNGA 2 cut(s) 252, 392
Hpy8I GTNNAC 1 cut(s) 420
HpyAV CCTTC 1 cut(s) 398
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 218, 305, 308, 317
Hsp92II CATG 4 cut(s) 61, 97, 116, 346
HspAI GCGC 1 cut(s) 149
KpnI GGTACC 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 420
Kzo9I GATC 2 cut(s) 216, 394
LpnPI CCDG 9 cut(s) 15, 19, 73, 159, 177, 235, 237, 307, 334
Lsp1109I GCAGC 3 cut(s) 172, 295, 317
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 202
MalI GATC 2 cut(s) 218, 396
MboI GATC 2 cut(s) 216, 394
MboII GAAGA 3 cut(s) 134, 257, 399
MlyI GAGTC 2 cut(s) 249, 319
MnlI CCTC 1 cut(s) 347
MseI TTAA 2 cut(s) 138, 419
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 2 cut(s) 6, 222
MspR9I CCNGG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 5 cut(s) 84, 218, 305, 308, 317
NcoI CCATGG 2 cut(s) 112, 342
NdeII GATC 2 cut(s) 216, 394
NlaIII CATG 4 cut(s) 61, 97, 116, 346
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 202
NotI GCGGCCGC 1 cut(s) 300
NsbI TGCGCA 1 cut(s) 150
NspI RCATGY 1 cut(s) 61
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 195
PflMI CCANNNNNTGG 1 cut(s) 321
PkrI GCNGC 6 cut(s) 86, 187, 301, 304, 307, 310
PleI GAGTC 2 cut(s) 249, 319
PpsI GAGTC 2 cut(s) 249, 319
Psp6I CCWGG 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 90
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 2 cut(s) 138, 419
SatI GCNGC 6 cut(s) 85, 186, 300, 303, 306, 309
Sau3AI GATC 2 cut(s) 216, 394
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 2 cut(s) 249, 319
ScrFI CCNGG 1 cut(s) 322
SetI ASST 4 cut(s) 290, 310, 354, 390
SfaNI GCATC 1 cut(s) 87
SsiI CCGC 3 cut(s) 84, 299, 303
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 2 cut(s) 112, 342
TaqI TCGA 1 cut(s) 108
TauI GCSGC 3 cut(s) 87, 302, 305
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 138, 419
Tru9I TTAA 2 cut(s) 138, 419
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 3 cut(s) 185, 305, 308
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 109, 110, 352
TspRI CASTG 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 321
XceI RCATGY 1 cut(s) 61
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.