AT1G30010

Intron maturase, type II family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10513151 .. 10516385
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30010.1

Sequence Viewer

Length: 2136 bp
ATGAAAAGACTGACATATCCATTGAGTTCTCTGAGGAATATCGTCGAACACTTTCACTGCAACACCTTCCACAAACCAATCTCTTCTCTTTCAATCTCCCCAACTCTCAAATCCGAATCACGAGAACCTTCTTCGACCCAAGACCCGTATTCACTACTCAAACAAGATCCAGTCGATATATGTCTCTCACTCTGGGTCAAATCATTCTCTTCTCCTCCTTCTGCTACTTTCTCGAACCTCACTGGCTTTCTCTCCAAATTCGATTTATGGGTCTTAGCTTATCAACGAACTTGTGCTCATGTCACCGGAACTTTCCCACCGCGCAATGCTATTCATGCCAATGCCCTCCGTTCGCTTCTCTCCCTCCAAAACGCCGTTACACGTTCCGGTGGCAAATTTCGGTGGAACGATAAGATGAATCAGTACGTAAGGAGCCCAAAGGATAAAATCTCAATGAATGGTGGAGAGGGTATGTCGAAAGGGAAGGTAAGGAGGATCATTGAGTCTGAAGAACCGATTTTTCAGGATCGGGTGGTTCATGAGGTTCTGTTGATGATTCTTGAACCTTTCTTTGAAGCTAGGTTTTCGAGTAAGTCTCATGGGTTTAGACCAGGTAGGAATCCACATACTGTGATTAGAACTATCAGAAGTAATTTCGCTGGGTACTTGTGGTTTATGAAAGGTGATGTTAGTGAAATGTTGGATCATGTTGATGTTGATGTAGTGATGAATTGTCTTCAAAAGGTTGTCAAGGATAGGAAAGTTCTTGGCTTGATTGAATCTTCTTTGAAATTTTCTGATAAGAGAGTGTTAAAAAGGGTTGTTGAGAAACATGGCAATGACAATGGATTGGGGACGAAAAGGAGGATTGAACGTGAAAAGAGAAACAAGACGAAGAAGAAGATTTTGAGTGATGATGAGCCGAAACCGGATCCTTATTGGTTGAGGACTTTCTATAGTTTTGCTCCTAAGGAAGCTGCAAAGGTGCCTTCTTATGGCTACTGTGGCGTATTGAGTCCTTTGCTTGCTAATGTATGTCTTAATGAGTTGGATCGATTTATGGAAACGAAGATAGTTGAGTATTTTAGTCCTTGTAAAGATGATTCAATATGGAAGGAGTCTATTGAAGATGGTTGTCATAATCCAGCCTGGCCAGAGTTTGTTCCATCTAGTGGGAAGGAGAAAACTAGGAAAATGGATTACATTAGGTATGGGGGCCATTTTCTGATTGGCATTAGAGGGCCTAGAGAGGATGCAGTAAAGATGCGGAAGGAAATAATTGATTTTTGCGATAGAGTTTTTGGTGTGAGATTGGATAATTCAAAGTTAGAGATTGAACATATAAGTAGAGGTATTCAGTTTCTTGACCACATAATTTGCCGAAGAGTTATTTACCCTACTCTCCGTTATACAGGAAGTGGAGGCAGCATTGTGAGCAAAAAGGGTGTGGGAACTTTGCTATCTGTGTCTGCTAGTTTAGAACAATGTATCCGCCAATTTAGGCGGCTTGCTTTTGTTAAAGGTGACAAAGATCCCGAGCCTTTACCTTGCAACCCAATGCTTTATTCAAGCCAGTCTCATAGTAACTCTCAGATGAATAAGTTTCTTGAAACAATGGCTGATTGGTACAAATATGCAGACAATCGCAAGAAGGCTGTTGGATTCTGTGCTTATGTAATTAGAAGCTCTTTGGCTAAATTGTACGCTGCAAGGTATAGACTTAAATCTCGTGCCAAAGTGTACAGCATTGCCTCACGGGATCTTAGCCATCCATTAAGCGAGAGTAGCAATAATTCTGCACCTGAATACTCTGATCTTCTGAGAATGGGACTCGTTGATGCTATAGAAGGAGTTCAATTCTCTCGCATGTCTTTGATTCCGTCTTGTGATTATACTCCATTCCCAAGGAACTGGATCCCAAATCATGAGCAAGTTTTGCAGGAGTACATCAGGCTACAAGACCCTAAATTCTTCTGTGGGTTGCATAGGTCAATAAAACGCGAGGGTCTAACCTTGCCCCAGGATGAGATCTCAGAGGCTGTGTGGGATTTCAAGACTCTTGGTGCTTGGAGATCAAAGTATGAAAATAAAAGAGAAGCAGATGATGGGTTGCAGAAATTAGACTCACAAACATGA

Protein Analysis

711

Amino Acids

81.54

Weight (kDa)

9.4

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 985
AccB7I CCANNNNNTGG 1 cut(s) 1172
AccII CGCG 2 cut(s) 322, 2001
AciI CCGC 4 cut(s) 320, 1267, 1492, 1504
AcoI YGGCCR 1 cut(s) 1151
AcsI RAATTY 4 cut(s) 257, 395, 791, 1967
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 6 cut(s) 425, 665, 1628, 1703, 1742, 1946
AfiI CCNNNNNNNGG 2 cut(s) 995, 1172
AflIII ACRYGT 1 cut(s) 380
AjnI CCWGG 3 cut(s) 610, 1148, 2019
AjuI GAANNNNNNNTTGG 2 cut(s) 1549, 1581
AloI GAACNNNNNNTCC 2 cut(s) 1473, 1505
AluBI AGCT 4 cut(s) 278, 578, 977, 1686
AluI AGCT 4 cut(s) 278, 578, 977, 1686
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 3 cut(s) 188, 600, 1581
AlwNI CAGNNNCTG 1 cut(s) 2039
Ama87I CYCGRG 1 cut(s) 1535
AoxI GGCC 3 cut(s) 1151, 1216, 1241
ApeKI GCWGC 3 cut(s) 977, 1425, 1706
ApoI RAATTY 4 cut(s) 257, 395, 791, 1967
Asp700I GAANNNNTTC 2 cut(s) 51, 1851
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 1216, 1241
AsuHPI GGTGA 3 cut(s) 295, 695, 1535
AvaI CYCGRG 1 cut(s) 1535
AxyI CCTNAGG 1 cut(s) 969
BalI TGGCCA 1 cut(s) 1153
BamHI GGATCC 2 cut(s) 931, 1914
BanI GGYRCC 1 cut(s) 985
BanII GRGCYC 1 cut(s) 437
BauI CACGAG 2 cut(s) 120, 1728
BbsI GAAGAC 1 cut(s) 728
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 3 cut(s) 964, 1437, 1693
BccI CCATC 4 cut(s) 1124, 1174, 1776, 2099
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 3 cut(s) 612, 1150, 2021
BciVI GTATCC 1 cut(s) 1499
BcoDI GTCTC 3 cut(s) 188, 600, 1581
BfaI CTAG 5 cut(s) 579, 1170, 1188, 1245, 1473
BfmI CTRYAG 2 cut(s) 955, 1842
BfuI GTATCC 1 cut(s) 1499
BglII AGATCT 1 cut(s) 2028
BisI GCNGC 4 cut(s) 978, 1426, 1505, 1707
BlsI GCNGC 4 cut(s) 979, 1427, 1506, 1708
Bme1390I CCNGG 3 cut(s) 612, 1150, 2021
BmeT110I CYCGRG 1 cut(s) 1535
BmgT120I GGNCC 2 cut(s) 1216, 1241
BmiI GGNNCC 5 cut(s) 434, 933, 987, 1217, 1916
BmrFI CCNGG 3 cut(s) 612, 1150, 2021
BmsI GCATC 3 cut(s) 1243, 1254, 1828
BpiI GAAGAC 1 cut(s) 728
BplI GAGNNNNNCTC 2 cut(s) 580, 612
Bsa29I ATCGAT 1 cut(s) 1054
BsaAI YACGTR 1 cut(s) 427
BsaJI CCNNGG 2 cut(s) 1904, 2019
BsaWI WCCGGW 3 cut(s) 305, 386, 928
Bsc4I CCNNNNNNNGG 2 cut(s) 995, 1172
Bse1I ACTGG 4 cut(s) 170, 247, 1573, 1916
Bse21I CCTNAGG 1 cut(s) 969
Bse3DI GCAATG 3 cut(s) 331, 844, 1746
BseBI CCWGG 3 cut(s) 612, 1150, 2021
BseCI ATCGAT 1 cut(s) 1054
BseDI CCNNGG 2 cut(s) 1904, 2019
BseGI GGATG 3 cut(s) 1258, 1768, 2029
BseLI CCNNNNNNNGG 2 cut(s) 995, 1172
BseMI GCAATG 3 cut(s) 331, 844, 1746
BseMII CTCAG 4 cut(s) 23, 1604, 1811, 2046
BseNI ACTGG 4 cut(s) 170, 247, 1573, 1916
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 3 cut(s) 964, 1437, 1693
BseYI CCCAGC 1 cut(s) 659
BsgI GTGCAG 1 cut(s) 1782
Bsh1236I CGCG 2 cut(s) 322, 2001
BshFI GGCC 3 cut(s) 1153, 1218, 1243
BshNI GGYRCC 1 cut(s) 985
BshVI ATCGAT 1 cut(s) 1054
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 1535
BsiSI CCGG 3 cut(s) 306, 387, 929
BslFI GGGAC 2 cut(s) 868, 1842
BslI CCNNNNNNNGG 2 cut(s) 995, 1172
BsmAI GTCTC 3 cut(s) 188, 600, 1581
BsmFI GGGAC 2 cut(s) 868, 1842
BsnI GGCC 3 cut(s) 1153, 1218, 1243
BsoBI CYCGRG 1 cut(s) 1535
Bsp1286I GDGCHC 2 cut(s) 298, 437
Bsp1407I TGTACA 1 cut(s) 1740
BspACI CCGC 4 cut(s) 320, 1267, 1492, 1504
BspANI GGCC 3 cut(s) 1153, 1218, 1243
BspCNI CTCAG 4 cut(s) 24, 1603, 1812, 2045
BspDI ATCGAT 1 cut(s) 1054
BspFNI CGCG 2 cut(s) 322, 2001
BspHI TCATGA 2 cut(s) 538, 1924
BspLI GGNNCC 5 cut(s) 434, 933, 987, 1217, 1916
BspT107I GGYRCC 1 cut(s) 985
BsrDI GCAATG 3 cut(s) 331, 844, 1746
BsrGI TGTACA 1 cut(s) 1740
BsrI ACTGG 4 cut(s) 170, 247, 1573, 1916
BssECI CCNNGG 2 cut(s) 1904, 2019
BssSI CACGAG 2 cut(s) 120, 1728
BssT1I CCWWGG 1 cut(s) 1904
Bst2BI CACGAG 2 cut(s) 120, 1728
Bst2UI CCWGG 3 cut(s) 612, 1150, 2021
Bst4CI ACNGT 2 cut(s) 631, 1004
Bst6I CTCTTC 3 cut(s) 88, 214, 1378
BstAPI GCANNNNNTGC 1 cut(s) 1936
BstAUI TGTACA 1 cut(s) 1740
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 1026, 1509
BstDEI CTNAG 7 cut(s) 32, 274, 969, 1590, 1763, 1820, 2032
BstF5I GGATG 3 cut(s) 1258, 1768, 2029
BstFNI CGCG 2 cut(s) 322, 2001
BstHHI GCGC 1 cut(s) 324
BstMAI GTCTC 3 cut(s) 188, 600, 1581
BstMWI GCNNNNNNNGC 5 cut(s) 335, 1005, 1434, 1785, 1936
BstNI CCWGG 3 cut(s) 612, 1150, 2021
BstNSI RCATGY 1 cut(s) 1870
BstSCI CCNGG 3 cut(s) 610, 1148, 2019
BstSFI CTRYAG 2 cut(s) 955, 1842
BstSNI TACGTA 1 cut(s) 427
BstUI CGCG 2 cut(s) 322, 2001
BstV1I GCAGC 3 cut(s) 964, 1437, 1693
BstV2I GAAGAC 1 cut(s) 728
BstX2I RGATCY 6 cut(s) 166, 931, 1531, 1759, 1914, 2028
BstXI CCANNNNNNTGG 1 cut(s) 1911
BstYI RGATCY 6 cut(s) 166, 931, 1531, 1759, 1914, 2028
Bsu15I ATCGAT 1 cut(s) 1054
Bsu36I CCTNAGG 1 cut(s) 969
BsuI GTATCC 1 cut(s) 1499
BsuRI GGCC 3 cut(s) 1153, 1218, 1243
BsuTUI ATCGAT 1 cut(s) 1054
BtsCI GGATG 3 cut(s) 1258, 1768, 2029
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 55, 240
Cac8I GCNNGC 2 cut(s) 1026, 1509
CaiI CAGNNNCTG 1 cut(s) 2039
CciI TCATGA 2 cut(s) 538, 1924
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 1216, 1241
ClaI ATCGAT 1 cut(s) 1054
CsiI ACCWGGT 1 cut(s) 610
Csp6I GTAC 6 cut(s) 424, 664, 1627, 1702, 1741, 1945
CspCI CAANNNNNGTGG 2 cut(s) 1358, 1393
CviAII CATG 9 cut(s) 299, 335, 539, 599, 707, 833, 1867, 1925, 2133
CviQI GTAC 6 cut(s) 424, 664, 1627, 1702, 1741, 1945
DdeI CTNAG 7 cut(s) 32, 274, 969, 1590, 1763, 1820, 2032
EaeI YGGCCR 1 cut(s) 1151
Eam1104I CTCTTC 3 cut(s) 88, 214, 1378
EarI CTCTTC 3 cut(s) 88, 214, 1378
EciI GGCGGA 1 cut(s) 1481
Eco105I TACGTA 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 1904
Eco24I GRGCYC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 528
Eco81I CCTNAGG 1 cut(s) 969
Eco88I CYCGRG 1 cut(s) 1535
EcoO109I RGGNCCY 1 cut(s) 1241
EcoRII CCWGG 3 cut(s) 610, 1148, 2019
EcoT14I CCWWGG 1 cut(s) 1904
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 1904
FaeI CATG 9 cut(s) 302, 338, 542, 602, 710, 836, 1870, 1928, 2136
FaqI GGGAC 2 cut(s) 868, 1842
FatI CATG 9 cut(s) 298, 334, 538, 598, 706, 832, 1866, 1924, 2132
Fnu4HI GCNGC 4 cut(s) 978, 1426, 1505, 1707
FokI GGATG 3 cut(s) 1265, 1755, 2036
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 4 cut(s) 978, 1426, 1505, 1707
FspBI CTAG 5 cut(s) 579, 1170, 1188, 1245, 1473
GlaI GCGC 1 cut(s) 323
GluI GCNGC 4 cut(s) 978, 1426, 1505, 1707
GsaI CCCAGC 1 cut(s) 663
HaeIII GGCC 3 cut(s) 1153, 1218, 1243
HapII CCGG 3 cut(s) 306, 387, 929
HhaI GCGC 1 cut(s) 324
Hin1II CATG 9 cut(s) 302, 338, 542, 602, 710, 836, 1870, 1928, 2136
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HpaII CCGG 3 cut(s) 306, 387, 929
HphI GGTGA 3 cut(s) 295, 695, 1535
Hpy166II GTNNAC 1 cut(s) 1741
Hpy8I GTNNAC 1 cut(s) 1741
Hpy99I CGWCG 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 631, 1004
HpyCH4IV ACGT 3 cut(s) 382, 426, 874
HpyF10VI GCNNNNNNNGC 5 cut(s) 335, 1005, 1434, 1785, 1936
HpyF3I CTNAG 7 cut(s) 32, 274, 969, 1590, 1763, 1820, 2032
HpySE526I ACGT 3 cut(s) 382, 426, 874
Hsp92II CATG 9 cut(s) 302, 338, 542, 602, 710, 836, 1870, 1928, 2136
HspAI GCGC 1 cut(s) 322
LmnI GCTCC 2 cut(s) 432, 970
Lsp1109I GCAGC 3 cut(s) 964, 1437, 1693
LweI GCATC 3 cut(s) 1243, 1254, 1828
MabI ACCWGGT 1 cut(s) 610
MaeI CTAG 5 cut(s) 579, 1170, 1188, 1245, 1473
MaeII ACGT 3 cut(s) 382, 426, 874
MaeIII GTNAC 4 cut(s) 301, 376, 1523, 1583
MflI RGATCY 6 cut(s) 166, 931, 1531, 1759, 1914, 2028
MhlI GDGCHC 2 cut(s) 298, 437
MlsI TGGCCA 1 cut(s) 1153
MluNI TGGCCA 1 cut(s) 1153
MlyI GAGTC 6 cut(s) 512, 1024, 1127, 1824, 2050, 2117
MmeI TCCRAC 3 cut(s) 681, 1029, 1639
Mox20I TGGCCA 1 cut(s) 1153
MroXI GAANNNNTTC 2 cut(s) 51, 1851
MscI TGGCCA 1 cut(s) 1153
MseI TTAA 5 cut(s) 812, 1041, 1518, 1722, 1775
MslI CAYNNNNRTG 4 cut(s) 339, 711, 837, 2131
Msp20I TGGCCA 1 cut(s) 1153
MspI CCGG 3 cut(s) 306, 387, 929
MspR9I CCNGG 3 cut(s) 612, 1150, 2021
MvaI CCWGG 3 cut(s) 612, 1150, 2021
MvnI CGCG 2 cut(s) 322, 2001
MwoI GCNNNNNNNGC 5 cut(s) 335, 1005, 1434, 1785, 1936
NlaIII CATG 9 cut(s) 302, 338, 542, 602, 710, 836, 1870, 1928, 2136
NlaIV GGNNCC 5 cut(s) 434, 933, 987, 1217, 1916
NmuCI GTSAC 2 cut(s) 301, 1523
NspI RCATGY 1 cut(s) 1870
PagI TCATGA 2 cut(s) 538, 1924
PdmI GAANNNNTTC 2 cut(s) 51, 1851
PfeI GAWTC 8 cut(s) 116, 418, 556, 619, 779, 1103, 1662, 1876
PflMI CCANNNNNTGG 1 cut(s) 1172
PkrI GCNGC 4 cut(s) 979, 1427, 1506, 1708
PleI GAGTC 6 cut(s) 511, 1023, 1126, 1824, 2050, 2117
PpsI GAGTC 6 cut(s) 511, 1023, 1126, 1824, 2050, 2117
Ppu21I YACGTR 1 cut(s) 427
Psp6I CCWGG 3 cut(s) 610, 1148, 2019
PspFI CCCAGC 1 cut(s) 659
PspGI CCWGG 3 cut(s) 610, 1148, 2019
PspN4I GGNNCC 5 cut(s) 434, 933, 987, 1217, 1916
PspPI GGNCC 2 cut(s) 1216, 1241
PstNI CAGNNNCTG 1 cut(s) 2039
PsuI RGATCY 6 cut(s) 166, 931, 1531, 1759, 1914, 2028
RsaI GTAC 6 cut(s) 425, 665, 1628, 1703, 1742, 1946
RsaNI GTAC 6 cut(s) 424, 664, 1627, 1702, 1741, 1945
RseI CAYNNNNRTG 4 cut(s) 339, 711, 837, 2131
SaqAI TTAA 5 cut(s) 812, 1041, 1518, 1722, 1775
SatI GCNGC 4 cut(s) 978, 1426, 1505, 1707
Sau96I GGNCC 2 cut(s) 1216, 1241
SchI GAGTC 6 cut(s) 512, 1024, 1127, 1824, 2050, 2117
ScrFI CCNGG 3 cut(s) 612, 1150, 2021
SduI GDGCHC 2 cut(s) 298, 437
SexAI ACCWGGT 1 cut(s) 610
SfaNI GCATC 3 cut(s) 1243, 1254, 1828
SfcI CTRYAG 2 cut(s) 955, 1842
SmiMI CAYNNNNRTG 4 cut(s) 339, 711, 837, 2131
SnaBI TACGTA 1 cut(s) 427
SsiI CCGC 4 cut(s) 320, 1267, 1492, 1504
SspMI CTAG 5 cut(s) 579, 1170, 1188, 1245, 1473
StyD4I CCNGG 3 cut(s) 610, 1148, 2019
StyI CCWWGG 1 cut(s) 1904
TaaI ACNGT 2 cut(s) 631, 1004
TaiI ACGT 3 cut(s) 385, 429, 877
TaqI TCGA 8 cut(s) 45, 134, 174, 233, 261, 476, 587, 1054
TatI WGTACW 2 cut(s) 1740, 1944
TauI GCSGC 1 cut(s) 1507
TfiI GAWTC 8 cut(s) 116, 418, 556, 619, 779, 1103, 1662, 1876
Tru1I TTAA 5 cut(s) 812, 1041, 1518, 1722, 1775
Tru9I TTAA 5 cut(s) 812, 1041, 1518, 1722, 1775
TscAI CASTG 2 cut(s) 62, 247
TseFI GTSAC 2 cut(s) 301, 1523
TseI GCWGC 3 cut(s) 977, 1425, 1706
Tsp45I GTSAC 2 cut(s) 301, 1523
TspDTI ATGAA 9 cut(s) 17, 323, 431, 470, 527, 692, 743, 1610, 2097
TspGWI ACGGA 3 cut(s) 338, 1394, 1869
TspRI CASTG 2 cut(s) 62, 247
Van91I CCANNNNNTGG 1 cut(s) 1172
XapI RAATTY 4 cut(s) 257, 395, 791, 1967
XceI RCATGY 1 cut(s) 1870
XcmI CCANNNNNNNNNTGG 1 cut(s) 1226
XmnI GAANNNNTTC 2 cut(s) 51, 1851
XspI CTAG 5 cut(s) 579, 1170, 1188, 1245, 1473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.