Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010836

Physical Location & Seq

Genomic Coordinates Forward (+)

10029142 .. 10031253

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG109300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGGGAAAGGGCACCGCACACTCCCTCCCTCGCTTCATCTTCTCACTGCGACCTTTCGTCGAGCACCTGGTGCGCACCTCCCATTTTCCCAGACCTTCAAATTTCGCCCGCGCTCTCTCTTCTTCCCTCACCGCCCCACCTCCCCTGAAAGACCAGCAAGACCCGTACGCCCTCCTCAAACAAGACCCAATTGAAATCTGCTCCAATCTCTGGGTCAAAGCCTTCTCTTCCCCACCATCCACCACCTTCCCCAACCTCACCGGCTTCCTCTCCAAGTTCGACCTCTGGGTCCTCGCCTACCAGCGCTGCTGCGCCCACGTGACCGGCACGTTCCCTCCCCGCAACGCCGTCCACTCCCACGTCCTCCACGACCTCCTCTCCCTCCGAAACGCCGTCGTTAAAGGAAACTATGCCTGGAACAAGAAGACCCACCAGTTCATTCGGAGCCCCAACGACAGGCCCAGCACCGAGGTCGTCTCCAAGCGGAAGCTCCAGGCTATGCTCGACTCCGACGAGCCTTGCTTTCAGGATAGGATTGTGCAGGAGGTGTTGCTGATGATCATTGAGCCGGTTTTCGAGGCCCGATTCTCGCCGAAAGCCCATGGGTTTCGGCCCGGCCGGAATGCCCACACTGTCATTCGGACCATCCGGAGCAACTTCGCCGGGTACTTGTGGTTTCTGAAGGGAGATGTCAGTGAAGTTTTCGAAAATGTGGATGGAAATGTGGTGATGGGTTGCTTGGAGCAGGCAGTGAGGGATAGGAAGGTATTGGGTTTGGTGAAATCTGCACTCAGAGCACCGAATCGGATACAGAGCAGTGATGGTGATGAACAATGGCCGAGGAAGAGGAAGAAGAAGAAGAAGGTTTCGAAGAAGAAGAAGATTTTGAATGAGAAGGAAGCGAAACCGGACCCGTATTGGCTCAGAACCTTTTTCAGTTTTGCACCTGAGGAAGCAGCTAAGGTACCTTGTTATGGGAACTGTGGAATTTTGAGTCCTTTACTTTCGAATGTGTGTCTGAATGAGTTGGATCAAGTTATGGAAGAGAAGATAGTTGAGTTTTTTAGGCCATCTGAGAGTGATTCTATATGGAAAAATTCGATTAATGATGGTTGTCATAACCCGGCTTGGCCGGAGTTTGTGCCTGCGAGTGGGGATGAGAAAACTAGGAAAATGGACTACATTAGGTATGGGGGTCATTTCTTGATTGGTATTCGAGGGCCTAGAGAGGATGCAGTGGATATGCGAAAGCAAATCACTGAGTTTTGTGAGAGAAGATTCGGGTTAAGGTTGGATAACTCTAAATTGGAGATTGAACACATAACTAGGGGAATTCAGTTTTTGGACCATATAATTTGCAGGAGGGTTATACACCCTACACTTCGGTACACAGCCACTGGAGGTAATGTTGTGAGTGAAAAAGGTGTAGGGACTTTGCTTTCAGTTACTGCTAGCTTACAACAATGTATTCGCCAATTCCGGCGGCTTGCATTTGTTAAGGGTGATAAAGATCCCGAGCCATTGCCCTGCACTCCGATGCTTTACTCGAGTCAAGCTCATACTAACTCCCAGATGAATAAGTTATTGGAGACCATGGCTGATTGGTACAGATACGCTGATAATCGCAAGAAAGTTGTTGGTTTTTGTGCTTATGTGATTCGCAGCTCTTTGGCTAAACTGTATGCTGCGAGGTATAGACTAAAATCAAGGGCCAAAGTGTATGGTATAGCTACCCGTGATCTCAGTCGTCCACTGAGGGAGAGCAGTAACAACTCTGCACCTGAATATTCTGATCTATTAAGGATGGGACTTGTTGATGCAATTGAAGGTGTTCGGTTCTCGCACATGTCTTTGATCCCATCTTGTGATTACTCGCCATTTCCTAGGAATTGGGTTCCAGATCATGAGCGGCTCTTACGAGACTACATCAGACTTGAAGACCCAAAGTTCTTCTGTGCCTTACATAGATCAATTAAAAAAGATGGTTTAAGTTTGCCTCAAGATGAGATATCTGAACTTCTGTGGCATTTCAAGTCCGTTGGGGTTCGGAACTATCTGCTAAAGGAGAAAAGGAAACAAAAACATGATGTTGTGGAAATGCGTGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000374 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006521 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009889 GO:0009894 GO:0009987 GO:0010228 GO:0010467 GO:0010556 GO:0010565 GO:0010675 GO:0010896 GO:0010962 GO:0016043 GO:0016070 GO:0016071 GO:0019216 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031329 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033238 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050994 GO:0051171 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1901360 GO:2000112 GO:2001006

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

703

Amino Acids

80.66

Weight (kDa)

9.55

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30010
fragaria_vesca	FvH4_3g05620 FvH4_3g05620 FvH4_3g05620
malus_domestica	MD05G1284200.v1.1 MD10G1262500.v1.1 MD10G1262600.v1.1
pyrus_communis	pycom05g26330 pycom10g21870
rosa_chinensis	RchiOBHm_Chr5g0014061
rosa_laevigata	RLG00000000981 RLG00000032078
rosa_roxburghii	Rroxscaffold_1G00062550
rosa_rugosa	Rorug05G0015200
rosa_samantha	Rh5AG109300 Rh5BG106000 Rh5BG249100 Rh5CG117800 Rh5DG104800
rosa_wichuraiana	Rw2G053790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
Acc16I	TGCGCA	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	964
AccB1I	GGYRCC	2 cut(s)	11, 964
AccB7I	CCANNNNNTGG	1 cut(s)	210
AccBSI	CCGCTC	1 cut(s)	1909
AccII	CGCG	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	648
AciI	CCGC	7 cut(s)	15, 109, 132, 340, 484, 1483, 1909
AclWI	GGATC	3 cut(s)	1038, 1505, 1849
AcoI	YGGCCR	3 cut(s)	616, 836, 1130
AcsI	RAATTY	4 cut(s)	100, 987, 1096, 1332
AcuI	CTGAAG	1 cut(s)	701
AcvI	CACGTG	1 cut(s)	319
AdeI	CACNNNGTG	1 cut(s)	70
AfaI	GTAC	6 cut(s)	167, 668, 966, 1388, 1607, 2107
AfeI	AGCGCT	1 cut(s)	305
AfiI	CCNNNNNNNGG	4 cut(s)	210, 456, 974, 1151
AflIII	ACRYGT	1 cut(s)	1845
AgsI	TTSAA	7 cut(s)	99, 194, 889, 1316, 1826, 1937, 2032
AhdI	GACNNNNNGTC	1 cut(s)	56
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	3 cut(s)	66, 413, 492
AjuI	GAANNNNNNNTTGG	2 cut(s)	1568, 1600
AluBI	AGCT	6 cut(s)	490, 959, 1455, 1556, 1665, 1730
AluI	AGCT	6 cut(s)	490, 959, 1455, 1556, 1665, 1730
Alw21I	GWGCWC	2 cut(s)	66, 799
Alw26I	GTCTC	3 cut(s)	481, 1583, 1914
AlwI	GGATC	3 cut(s)	1038, 1505, 1849
AlwNI	CAGNNNCTG	2 cut(s)	1397, 1448
Ama87I	CYCGRG	2 cut(s)	1514, 1546
Aor13HI	TCCGGA	1 cut(s)	648
Aor51HI	AGCGCT	1 cut(s)	305
AoxI	GGCC	9 cut(s)	458, 579, 611, 616, 836, 1067, 1130, 1220, 1710
ApeKI	GCWGC	5 cut(s)	306, 309, 956, 1662, 1685
ApoI	RAATTY	4 cut(s)	100, 987, 1096, 1332
AseI	ATTAAT	1 cut(s)	1104
Asp700I	GAANNNNTTC	1 cut(s)	1830
Asp718I	GGTACC	1 cut(s)	964
AspA2I	CCTAGG	1 cut(s)	1883
AspLEI	GCGC	4 cut(s)	75, 113, 306, 314
AspS9I	GGNCC	9 cut(s)	289, 459, 580, 612, 642, 910, 1220, 1345, 1710
AsuC2I	CCSGG	3 cut(s)	615, 664, 1124
AsuHPI	GGTGA	6 cut(s)	121, 250, 739, 790, 836, 1514
AsuII	TTCGAA	3 cut(s)	705, 869, 1007
AsuNHI	GCTAGC	1 cut(s)	1451
AvaI	CYCGRG	2 cut(s)	1514, 1546
AvaII	GGWCC	4 cut(s)	289, 642, 910, 1345
AvrII	CCTAGG	1 cut(s)	1883
AxyI	CCTNAGG	1 cut(s)	948
BaeGI	GKGCMC	1 cut(s)	14
BanI	GGYRCC	2 cut(s)	11, 964
BanII	GRGCYC	1 cut(s)	449
BbrPI	CACGTG	1 cut(s)	319
BbsI	GAAGAC	2 cut(s)	431, 1944
Bbv12I	GWGCWC	2 cut(s)	66, 799
BbvI	GCAGC	5 cut(s)	293, 296, 968, 1672, 1674
BceAI	ACGGC	2 cut(s)	332, 377
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	3 cut(s)	68, 415, 494
BciVI	GTATCC	1 cut(s)	801
BclI	TGATCA	1 cut(s)	558
BcnI	CCSGG	3 cut(s)	615, 664, 1124
BcoDI	GTCTC	3 cut(s)	481, 1583, 1914
BfaI	CTAG	5 cut(s)	1167, 1224, 1326, 1452, 1884
BfoI	RGCGCY	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	801
BisI	GCNGC	7 cut(s)	307, 310, 957, 1484, 1663, 1686, 1910
BlnI	CCTAGG	1 cut(s)	1883
BlsI	GCNGC	7 cut(s)	308, 311, 958, 1485, 1664, 1687, 1911
Bme1390I	CCNGG	6 cut(s)	68, 415, 494, 615, 664, 1124
Bme18I	GGWCC	4 cut(s)	289, 642, 910, 1345
BmeRI	GACNNNNNGTC	1 cut(s)	56
BmeT110I	CYCGRG	2 cut(s)	1514, 1546
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	9 cut(s)	289, 459, 580, 612, 642, 910, 1220, 1345, 1710
BmiI	GGNNCC	6 cut(s)	13, 290, 446, 912, 966, 1896
BmrFI	CCNGG	6 cut(s)	68, 415, 494, 615, 664, 1124
BmsI	GCATC	3 cut(s)	1222, 1527, 1807
BmtI	GCTAGC	1 cut(s)	1455
BpiI	GAAGAC	2 cut(s)	431, 1944
BplI	GAGNNNNNCTC	4 cut(s)	461, 493, 1540, 1572
BpmI	CTGGAG	2 cut(s)	476, 1419
Bpu10I	CCTNAGC	1 cut(s)	960
Bpu14I	TTCGAA	3 cut(s)	705, 869, 1007
BpuEI	CTTGAG	1 cut(s)	1983
BpuMI	CCSGG	3 cut(s)	615, 664, 1124
BsaAI	YACGTR	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	1509
BsaI	GGTCTC	1 cut(s)	1583
BsaJI	CCNNGG	5 cut(s)	468, 601, 839, 1593, 1883
BsaWI	WCCGGW	2 cut(s)	648, 907
BsaXI	ACNNNNNCTCC	8 cut(s)	9, 39, 319, 349, 362, 392, 1392, 1422
Bsc4I	CCNNNNNNNGG	4 cut(s)	210, 456, 974, 1151
Bse118I	RCCGGY	3 cut(s)	260, 323, 568
Bse1I	ACTGG	2 cut(s)	433, 1402
Bse21I	CCTNAGG	1 cut(s)	948
Bse3DI	GCAATG	1 cut(s)	1520
Bse8I	GATNNNNATC	1 cut(s)	1509
BseAI	TCCGGA	1 cut(s)	648
BseBI	CCWGG	3 cut(s)	68, 415, 494
BseDI	CCNNGG	5 cut(s)	468, 601, 839, 1593, 1883
BseGI	GGATG	6 cut(s)	236, 645, 721, 1162, 1237, 1809
BseJI	GATNNNNATC	1 cut(s)	1509
BseLI	CCNNNNNNNGG	4 cut(s)	210, 456, 974, 1151
BseMI	GCAATG	1 cut(s)	1520
BseMII	CTCAG	7 cut(s)	805, 937, 939, 1065, 1251, 1745, 1756
BseNI	ACTGG	2 cut(s)	433, 1402
BseRI	GAGGAG	2 cut(s)	164, 365
BseSI	GKGCMC	1 cut(s)	14
BseX3I	CGGCCG	1 cut(s)	616
BseXI	GCAGC	5 cut(s)	293, 296, 968, 1672, 1674
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	4 cut(s)	560, 771, 1513, 1761
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	619
BshFI	GGCC	9 cut(s)	460, 581, 613, 618, 838, 1069, 1132, 1222, 1712
BshNI	GGYRCC	2 cut(s)	11, 964
BsiEI	CGRYCG	1 cut(s)	619
BsiHKAI	GWGCWC	2 cut(s)	66, 799
BsiHKCI	CYCGRG	2 cut(s)	1514, 1546
BsiWI	CGTACG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	1444, 1821
BslI	CCNNNNNNNGG	4 cut(s)	210, 456, 974, 1151
BsmAI	GTCTC	3 cut(s)	481, 1583, 1914
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	2 cut(s)	1444, 1821
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	9 cut(s)	460, 581, 613, 618, 838, 1069, 1132, 1222, 1712
Bso31I	GGTCTC	1 cut(s)	1583
BsoBI	CYCGRG	2 cut(s)	1514, 1546
Bsp119I	TTCGAA	3 cut(s)	705, 869, 1007
Bsp1286I	GDGCHC	4 cut(s)	14, 66, 449, 799
Bsp13I	TCCGGA	1 cut(s)	648
Bsp143I	GATC	8 cut(s)	558, 1030, 1510, 1738, 1792, 1854, 1900, 1967
Bsp19I	CCATGG	2 cut(s)	601, 1593
BspACI	CCGC	7 cut(s)	15, 109, 132, 340, 484, 1483, 1909
BspANI	GGCC	9 cut(s)	460, 581, 613, 618, 838, 1069, 1132, 1222, 1712
BspCNI	CTCAG	7 cut(s)	804, 936, 940, 1066, 1252, 1746, 1755
BspEI	TCCGGA	1 cut(s)	648
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	1903
BspLI	GGNNCC	6 cut(s)	13, 290, 446, 912, 966, 1896
BspOI	GCTAGC	1 cut(s)	1455
BspPI	GGATC	3 cut(s)	1038, 1505, 1849
BspT104I	TTCGAA	3 cut(s)	705, 869, 1007
BspT107I	GGYRCC	2 cut(s)	11, 964
BspTNI	GGTCTC	1 cut(s)	1583
BsrBI	CCGCTC	1 cut(s)	1909
BsrDI	GCAATG	1 cut(s)	1520
BsrFI	RCCGGY	3 cut(s)	260, 323, 568
BsrI	ACTGG	2 cut(s)	433, 1402
BssAI	RCCGGY	3 cut(s)	260, 323, 568
BssECI	CCNNGG	5 cut(s)	468, 601, 839, 1593, 1883
BssMI	GATC	8 cut(s)	558, 1030, 1510, 1738, 1792, 1854, 1900, 1967
BssT1I	CCWWGG	3 cut(s)	601, 1593, 1883
Bst2UI	CCWGG	3 cut(s)	68, 415, 494
Bst4CI	ACNGT	3 cut(s)	634, 983, 1680
Bst6I	CTCTTC	4 cut(s)	124, 232, 839, 1038
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	319
BstBI	TTCGAA	3 cut(s)	705, 869, 1007
BstC8I	GCNNGC	5 cut(s)	109, 747, 1146, 1453, 1488
BstDEI	CTNAG	8 cut(s)	791, 923, 948, 960, 1074, 1260, 1742, 1754
BstDSI	CCRYGG	2 cut(s)	601, 1593
BstF5I	GGATG	6 cut(s)	236, 645, 721, 1162, 1237, 1809
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	4 cut(s)	75, 113, 306, 314
BstKTI	GATC	8 cut(s)	561, 1033, 1513, 1741, 1795, 1857, 1903, 1970
BstMAI	GTCTC	3 cut(s)	481, 1583, 1914
BstMBI	GATC	8 cut(s)	558, 1030, 1510, 1738, 1792, 1854, 1900, 1967
BstMCI	CGRYCG	1 cut(s)	619
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 794
BstNI	CCWGG	3 cut(s)	68, 415, 494
BstNSI	RCATGY	1 cut(s)	1849
BstSCI	CCNGG	6 cut(s)	66, 413, 492, 613, 662, 1122
BstSLI	GKGCMC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	5 cut(s)	293, 296, 968, 1672, 1674
BstV2I	GAAGAC	2 cut(s)	431, 1944
BstX2I	RGATCY	1 cut(s)	1510
BstYI	RGATCY	1 cut(s)	1510
BstZI	CGGCCG	1 cut(s)	616
Bsu36I	CCTNAGG	1 cut(s)	948
BsuI	GTATCC	1 cut(s)	801
BsuRI	GGCC	9 cut(s)	460, 581, 613, 618, 838, 1069, 1132, 1222, 1712
BtgI	CCRYGG	2 cut(s)	601, 1593
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	6 cut(s)	236, 645, 721, 1162, 1237, 1809
BtsI	GCAGTG	4 cut(s)	44, 756, 823, 1242
BtsIMutI	CAGTG	9 cut(s)	44, 630, 700, 756, 823, 1242, 1257, 1395, 1751
Cac8I	GCNNGC	5 cut(s)	109, 747, 1146, 1453, 1488
CaiI	CAGNNNCTG	2 cut(s)	1397, 1448
CciI	TCATGA	1 cut(s)	1903
CfoI	GCGC	4 cut(s)	75, 113, 306, 314
Cfr10I	RCCGGY	3 cut(s)	260, 323, 568
Cfr13I	GGNCC	9 cut(s)	289, 459, 580, 612, 642, 910, 1220, 1345, 1710
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	6 cut(s)	166, 667, 965, 1387, 1606, 2106
CviAII	CATG	6 cut(s)	602, 1594, 1846, 1904, 2084, 2109
CviQI	GTAC	6 cut(s)	166, 667, 965, 1387, 1606, 2106
DdeI	CTNAG	8 cut(s)	791, 923, 948, 960, 1074, 1260, 1742, 1754
DpnI	GATC	8 cut(s)	560, 1032, 1512, 1740, 1794, 1856, 1902, 1969
DpnII	GATC	8 cut(s)	558, 1030, 1510, 1738, 1792, 1854, 1900, 1967
DraIII	CACNNNGTG	1 cut(s)	70
DrdI	GACNNNNNNGTC	1 cut(s)	287
DriI	GACNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	3 cut(s)	616, 836, 1130
EagI	CGGCCG	1 cut(s)	616
Eam1104I	CTCTTC	4 cut(s)	124, 232, 839, 1038
Eam1105I	GACNNNNNGTC	1 cut(s)	56
EarI	CTCTTC	4 cut(s)	124, 232, 839, 1038
EclXI	CGGCCG	1 cut(s)	616
Eco130I	CCWWGG	3 cut(s)	601, 1593, 1883
Eco24I	GRGCYC	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	1583
Eco32I	GATATC	1 cut(s)	2010
Eco47I	GGWCC	4 cut(s)	289, 642, 910, 1345
Eco47III	AGCGCT	1 cut(s)	305
Eco52I	CGGCCG	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	701
Eco72I	CACGTG	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	948
Eco88I	CYCGRG	2 cut(s)	1514, 1546
EcoO109I	RGGNCCY	2 cut(s)	289, 1220
EcoRI	GAATTC	1 cut(s)	1332
EcoRII	CCWGG	3 cut(s)	66, 413, 492
EcoRV	GATATC	1 cut(s)	2010
EcoT14I	CCWWGG	3 cut(s)	601, 1593, 1883
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	3 cut(s)	601, 1593, 1883
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	6 cut(s)	605, 1597, 1849, 1907, 2087, 2112
FaqI	GGGAC	2 cut(s)	1444, 1821
FatI	CATG	6 cut(s)	601, 1593, 1845, 1903, 2083, 2108
FauI	CCCGC	2 cut(s)	116, 347
FbaI	TGATCA	1 cut(s)	558
Fnu4HI	GCNGC	7 cut(s)	307, 310, 957, 1484, 1663, 1686, 1910
FokI	GGATG	6 cut(s)	223, 632, 728, 1169, 1244, 1816
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	7 cut(s)	307, 310, 957, 1484, 1663, 1686, 1910
FspAI	RTGCGCAY	1 cut(s)	74
FspBI	CTAG	5 cut(s)	1167, 1224, 1326, 1452, 1884
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	4 cut(s)	74, 112, 305, 313
GluI	GCNGC	7 cut(s)	307, 310, 957, 1484, 1663, 1686, 1910
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	2 cut(s)	476, 1419
HaeII	RGCGCY	1 cut(s)	307
HaeIII	GGCC	9 cut(s)	460, 581, 613, 618, 838, 1069, 1132, 1222, 1712
HhaI	GCGC	4 cut(s)	75, 113, 306, 314
Hin1II	CATG	6 cut(s)	605, 1597, 1849, 1907, 2087, 2112
Hin6I	GCGC	4 cut(s)	73, 111, 304, 312
HinP1I	GCGC	4 cut(s)	73, 111, 304, 312
HinfI	GANTC	8 cut(s)	506, 585, 802, 994, 1082, 1278, 1549, 1657
HphI	GGTGA	6 cut(s)	121, 250, 739, 790, 836, 1514
Hpy166II	GTNNAC	3 cut(s)	352, 1389, 1751
Hpy188III	TCNNGA	7 cut(s)	527, 649, 1204, 1514, 1898, 1904, 2000
Hpy8I	GTNNAC	3 cut(s)	352, 1389, 1751
Hpy99I	CGWCG	3 cut(s)	62, 398, 515
HpyAV	CCTTC	8 cut(s)	105, 232, 256, 676, 757, 856, 889, 1820
HpyCH4III	ACNGT	3 cut(s)	634, 983, 1680
HpyCH4IV	ACGT	3 cut(s)	318, 329, 360
HpyCH4V	TGCA	9 cut(s)	541, 788, 944, 1235, 1359, 1490, 1530, 1778, 1820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 794
HpyF3I	CTNAG	8 cut(s)	791, 923, 948, 960, 1074, 1260, 1742, 1754
HpySE526I	ACGT	3 cut(s)	318, 329, 360
Hsp92II	CATG	6 cut(s)	605, 1597, 1849, 1907, 2087, 2112
HspAI	GCGC	4 cut(s)	73, 111, 304, 312
Kpn2I	TCCGGA	1 cut(s)	648
KpnI	GGTACC	1 cut(s)	968
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	8 cut(s)	558, 1030, 1510, 1738, 1792, 1854, 1900, 1967
LmnI	GCTCC	5 cut(s)	206, 444, 495, 651, 742
Lsp1109I	GCAGC	5 cut(s)	293, 296, 968, 1672, 1674
LweI	GCATC	3 cut(s)	1222, 1527, 1807
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	5 cut(s)	1167, 1224, 1326, 1452, 1884
MaeII	ACGT	3 cut(s)	318, 329, 360
MaeIII	GTNAC	3 cut(s)	319, 1444, 1766
MalI	GATC	8 cut(s)	560, 1032, 1512, 1740, 1794, 1856, 1902, 1969
MbiI	CCGCTC	1 cut(s)	1909
MboI	GATC	8 cut(s)	558, 1030, 1510, 1738, 1792, 1854, 1900, 1967
MfeI	CAATTG	2 cut(s)	189, 1821
MflI	RGATCY	1 cut(s)	1510
MhlI	GDGCHC	4 cut(s)	14, 66, 449, 799
MlyI	GAGTC	3 cut(s)	500, 1003, 1558
MmeI	TCCRAC	3 cut(s)	534, 1008, 1272
MroI	TCCGGA	1 cut(s)	648
MroXI	GAANNNNTTC	1 cut(s)	1830
MseI	TTAA	7 cut(s)	399, 1104, 1286, 1497, 1799, 1974, 1988
MslI	CAYNNNNRTG	1 cut(s)	1535
MspR9I	CCNGG	6 cut(s)	68, 415, 494, 615, 664, 1124
MunI	CAATTG	2 cut(s)	189, 1821
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	3 cut(s)	68, 415, 494
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	70, 794
NciI	CCSGG	3 cut(s)	615, 664, 1124
NcoI	CCATGG	2 cut(s)	601, 1593
NdeII	GATC	8 cut(s)	558, 1030, 1510, 1738, 1792, 1854, 1900, 1967
NheI	GCTAGC	1 cut(s)	1451
NlaIII	CATG	6 cut(s)	605, 1597, 1849, 1907, 2087, 2112
NlaIV	GGNNCC	6 cut(s)	13, 290, 446, 912, 966, 1896
NmeAIII	GCCGAG	1 cut(s)	864
NmuCI	GTSAC	1 cut(s)	319
NsbI	TGCGCA	1 cut(s)	74
NspI	RCATGY	1 cut(s)	1849
NspV	TTCGAA	3 cut(s)	705, 869, 1007
PaeR7I	CTCGAG	1 cut(s)	1546
PagI	TCATGA	1 cut(s)	1903
PciI	ACATGT	1 cut(s)	1845
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 510
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	1830
PfeI	GAWTC	5 cut(s)	585, 802, 1082, 1278, 1657
Pfl23II	CGTACG	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	7 cut(s)	308, 311, 958, 1485, 1664, 1687, 1911
PleI	GAGTC	3 cut(s)	500, 1002, 1557
PmaCI	CACGTG	1 cut(s)	319
PmlI	CACGTG	1 cut(s)	319
PpsI	GAGTC	3 cut(s)	500, 1002, 1557
Ppu21I	YACGTR	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	289
PscI	ACATGT	1 cut(s)	1845
PshBI	ATTAAT	1 cut(s)	1104
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	3 cut(s)	66, 413, 492
PspCI	CACGTG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	3 cut(s)	66, 413, 492
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	6 cut(s)	13, 290, 446, 912, 966, 1896
PspPI	GGNCC	9 cut(s)	289, 459, 580, 612, 642, 910, 1220, 1345, 1710
PspPPI	RGGWCCY	1 cut(s)	289
PspXI	VCTCGAGB	1 cut(s)	1546
PstNI	CAGNNNCTG	2 cut(s)	1397, 1448
PsuI	RGATCY	1 cut(s)	1510
RsaI	GTAC	6 cut(s)	167, 668, 966, 1388, 1607, 2107
RsaNI	GTAC	6 cut(s)	166, 667, 965, 1387, 1606, 2106
RseI	CAYNNNNRTG	1 cut(s)	1535
SaqAI	TTAA	7 cut(s)	399, 1104, 1286, 1497, 1799, 1974, 1988
SatI	GCNGC	7 cut(s)	307, 310, 957, 1484, 1663, 1686, 1910
Sau3AI	GATC	8 cut(s)	558, 1030, 1510, 1738, 1792, 1854, 1900, 1967
Sau96I	GGNCC	9 cut(s)	289, 459, 580, 612, 642, 910, 1220, 1345, 1710
SchI	GAGTC	3 cut(s)	500, 1003, 1558
ScrFI	CCNGG	6 cut(s)	68, 415, 494, 615, 664, 1124
SduI	GDGCHC	4 cut(s)	14, 66, 449, 799
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	3 cut(s)	1222, 1527, 1807
Sfr274I	CTCGAG	1 cut(s)	1546
SfuI	TTCGAA	3 cut(s)	705, 869, 1007
SinI	GGWCC	4 cut(s)	289, 642, 910, 1345
SlaI	CTCGAG	1 cut(s)	1546
SmiMI	CAYNNNNRTG	1 cut(s)	1535
SmlI	CTYRAG	2 cut(s)	1546, 1998
SmoI	CTYRAG	2 cut(s)	1546, 1998
SsiI	CCGC	7 cut(s)	15, 109, 132, 340, 484, 1483, 1909
SspI	AATATT	1 cut(s)	1787
SspMI	CTAG	5 cut(s)	1167, 1224, 1326, 1452, 1884
StyD4I	CCNGG	6 cut(s)	66, 413, 492, 613, 662, 1122
StyI	CCWWGG	3 cut(s)	601, 1593, 1883
TaaI	ACNGT	3 cut(s)	634, 983, 1680
TaiI	ACGT	3 cut(s)	321, 332, 363
TauI	GCSGC	2 cut(s)	1486, 1912
TfiI	GAWTC	5 cut(s)	585, 802, 1082, 1278, 1657
Tru1I	TTAA	7 cut(s)	399, 1104, 1286, 1497, 1799, 1974, 1988
Tru9I	TTAA	7 cut(s)	399, 1104, 1286, 1497, 1799, 1974, 1988
TscAI	CASTG	9 cut(s)	51, 637, 700, 756, 823, 1242, 1264, 1402, 1758
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	5 cut(s)	306, 309, 956, 1662, 1685
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	25, 427, 843, 1589
TspGWI	ACGGA	1 cut(s)	2026
TspRI	CASTG	9 cut(s)	51, 637, 700, 756, 823, 1242, 1264, 1402, 1758
Van91I	CCANNNNNTGG	1 cut(s)	210
VpaK11BI	GGWCC	4 cut(s)	289, 642, 910, 1345
VspI	ATTAAT	1 cut(s)	1104
XapI	RAATTY	4 cut(s)	100, 987, 1096, 1332
XceI	RCATGY	1 cut(s)	1849
XhoI	CTCGAG	1 cut(s)	1546
XmaJI	CCTAGG	1 cut(s)	1883
XmnI	GAANNNNTTC	1 cut(s)	1830
XspI	CTAG	5 cut(s)	1167, 1224, 1326, 1452, 1884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.