Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010836

Physical Location & Seq

Genomic Coordinates Forward (+)

9558444 .. 9562015

Gene Structure 3572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29453

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGGGAAAGGGCACCGCACACTCCCTCCCTCGCTTCATCTTCTCACTGCGACCTTTCGTCGAGCATCTGGTGCGCACCTCCCATTTTCCCAGACCTTCAAATTTCGCCCGCGCTCTCTCTTCTTCCCTCATCGCCCCACCTCCCCTGAAAGACCAGCAAGACCCCTACGCCCTCCTCAAACAAGACCCAATTGAAATCTGCTCCAATCTCTGGGTCAAAGCCTTCTCTTCCCCACCATCCACCACCTTCCCCAACCTCACCGGCTTCCTCTCCAAATTCGACCTCTGGGTCCTCGCCTACCAGCGCTGCTGCGCCCACGTGACCGGCACGTTCCCTCCCCGCAACGCCGTCCACTCCCACGTCCTCCACGACCTCCTCTCCCTCCGAAACGCCGTCGTTAAAGGAAACTATGCCTGGAACAAGAAGACCCACCAGTTCATTCGGAGCCCCAACGAGAGGCCCAGCACCGAGGTCGTCTCCAAGCGGAAGCTCCAGGCTATGCTCGACTCCGACGAGCCTTGCTTTCAGGATAGGATTGTGCAGGAGGTGTTGCTGATGATCATTGAGCCGGTTTTCGAGGCCCGATTCTCGCCGAAGGCCCATGGGTTTCGGCCCGGCCGGAATGCCCACACTGTCATTCGGACCATCCGGAGCAACTTCGCCGGGTACTTGTGGTTTCTGAAGGGAGATATCAGTGAAGTTTTCGAAAATGTGGATGGAAATGTCGTGATGGGTTGCTTGGAGCAGGCAGTGAGGGATAGGAAGATATTGGGTTTGGTGAAATCTGCACTCAGAGCACCGAATCGGATACAGAGCAGTGATGGTGATGAACACTGGCCGAGGAAGAAGAAGAAGAAGAAGGTTTTGAAGAAGAAGAAGATTTTGAATGAGAAGGAAGCGAAACCGGACCCGTATTGGCTCAGAACCTTTTTCAATTTTGCACCTGAGGAAGCAGCTAAGGTACCTTGTTATGGGAACTGTGGAATTTTGAGTCCTTTACTTTCGAATGTGTGTCTGAATGAGTTGGATCAAGTTATGGAAGAGAAGATAGTTGAGTTTTTTAGGCCATCTGAGAGTGATTCTATATGGAAAAATTCGATTTATGATGGTTGTCATAACCCGGCTTGGCCGGAATTTGTGCCTGCGAGTGGGGATGAGAAAACTAGGAAAATGGACTACATTAGGTATGGGGGTCATTTCTTGATTGGTATTCGAGGGCCTAGAGAGGATGCAGTGGATATGCGAAAGCAAATCATTGAGTTTTGTGAGAGAAGATTCGGGTTAAGGTTGGATAACTCTAAATTGGAGATTGAACACATAACTAGGGGAATTCAGTTTTTGGACCATATAATTTGCAGGAGGGTTATACACCCTACACTTCGGTACACAGCCACTGGAGGTAATGTTGTGAGTGAAAAAGGTGTAGGGACTTTGCTTTCAGTTACTGCTAGCTTACAACAATGTATTCGCCAATTCCGGCGGCTTGCATTTGTTAAGGGTGATAAAGATCCCGAGCCATTGCCCTGCACTCCGATGCTTTACTCGAGTCAAGCTCATACTAACTCCCAGATGAATAAGTTATTGGAGACCATGGCTGATTGGTACAGATACGCTGATAATCGCAAGAAAGTTGTTGGTTTTTGTGCTTATGTGATTCGCAGCTCTTTGGCTAAACTGTATGCTGCGAGGTATAGACTAAAATCAAGGGCCAGAGTGTATAGTATAGCTACCCGCGACCTCAGTCGTCCACTGAGGGAGAGCAGTAACAACTCTGCACCTGAATATTCTGATCTATTAAGGATGGGACTTGTTGATGCAATTGAAGGTGTTCGGTTCTCGAACATGTCTTTGATCCCATCTTGTGATTACTCGCCATTTCCTAGGAATTGGGTTCCAGATCATGAGCGGCTCTTACGAGACTACATCAGACTTGAAGACCCAAAGTTCTTCTGTGCCTTACATAGATCAATTAAAAAAGATGGTTTAAGTTTGCCTCAAGATGAGATATCTGAACTTCTGTGGCATTTCAAGTCCGTTGGGGTTCGGAACTATCTGCTAAAGGAGAAAAGGAAACAAAAACATGATGTCGTGGAAATGCGTGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000374 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006521 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009889 GO:0009894 GO:0009987 GO:0010228 GO:0010467 GO:0010556 GO:0010565 GO:0010675 GO:0010896 GO:0010962 GO:0016043 GO:0016070 GO:0016071 GO:0019216 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031329 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033238 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050994 GO:0051171 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1901360 GO:2000112 GO:2001006

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

702

Amino Acids

80.71

Weight (kDa)

9.52

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30010
fragaria_vesca	FvH4_3g05620 FvH4_3g05620 FvH4_3g05620
malus_domestica	MD05G1284200.v1.1 MD10G1262500.v1.1 MD10G1262600.v1.1
pyrus_communis	pycom05g26330 pycom10g21870
rosa_chinensis	RchiOBHm_Chr5g0014061
rosa_laevigata	RLG00000000981 RLG00000032078
rosa_roxburghii	Rroxscaffold_1G00062550
rosa_rugosa	Rorug05G0015200
rosa_samantha	Rh5AG109300 Rh5BG106000 Rh5BG249100 Rh5CG117800 Rh5DG104800
rosa_wichuraiana	Rw2G053790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
Acc16I	TGCGCA	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	961
AccB1I	GGYRCC	2 cut(s)	11, 961
AccB7I	CCANNNNNTGG	1 cut(s)	210
AccBSI	CCGCTC	1 cut(s)	1906
AccII	CGCG	2 cut(s)	111, 1734
AccIII	TCCGGA	1 cut(s)	648
AciI	CCGC	7 cut(s)	15, 109, 340, 484, 1480, 1732, 1906
AclWI	GGATC	3 cut(s)	1035, 1502, 1846
AcoI	YGGCCR	3 cut(s)	616, 836, 1127
AcsI	RAATTY	6 cut(s)	100, 275, 984, 1093, 1133, 1329
AcuI	CTGAAG	1 cut(s)	701
AcvI	CACGTG	1 cut(s)	319
AfaI	GTAC	5 cut(s)	668, 963, 1385, 1604, 2104
AfeI	AGCGCT	1 cut(s)	305
AfiI	CCNNNNNNNGG	4 cut(s)	210, 456, 971, 1148
AflIII	ACRYGT	1 cut(s)	1842
AgsI	TTSAA	9 cut(s)	99, 194, 868, 886, 934, 1313, 1823, 1934, 2029
AhdI	GACNNNNNGTC	1 cut(s)	56
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	413, 492
AjuI	GAANNNNNNNTTGG	2 cut(s)	1565, 1597
AluBI	AGCT	6 cut(s)	490, 956, 1452, 1553, 1662, 1727
AluI	AGCT	6 cut(s)	490, 956, 1452, 1553, 1662, 1727
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	3 cut(s)	481, 1580, 1911
AlwI	GGATC	3 cut(s)	1035, 1502, 1846
AlwNI	CAGNNNCTG	2 cut(s)	1394, 1445
Ama87I	CYCGRG	2 cut(s)	1511, 1543
Aor13HI	TCCGGA	1 cut(s)	648
Aor51HI	AGCGCT	1 cut(s)	305
ApeKI	GCWGC	5 cut(s)	306, 309, 953, 1659, 1682
ApoI	RAATTY	6 cut(s)	100, 275, 984, 1093, 1133, 1329
Asp700I	GAANNNNTTC	1 cut(s)	1827
Asp718I	GGTACC	1 cut(s)	961
AspA2I	CCTAGG	1 cut(s)	1880
AspLEI	GCGC	4 cut(s)	75, 113, 306, 314
AsuC2I	CCSGG	3 cut(s)	615, 664, 1121
AsuHPI	GGTGA	4 cut(s)	250, 790, 836, 1511
AsuII	TTCGAA	2 cut(s)	705, 1004
AsuNHI	GCTAGC	1 cut(s)	1448
AvaI	CYCGRG	2 cut(s)	1511, 1543
AvaII	GGWCC	4 cut(s)	289, 642, 907, 1342
AvrII	CCTAGG	1 cut(s)	1880
AxyI	CCTNAGG	1 cut(s)	945
BaeGI	GKGCMC	1 cut(s)	14
BanI	GGYRCC	2 cut(s)	11, 961
BanII	GRGCYC	1 cut(s)	449
BbrPI	CACGTG	1 cut(s)	319
BbsI	GAAGAC	2 cut(s)	431, 1941
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	5 cut(s)	293, 296, 965, 1669, 1671
BceAI	ACGGC	2 cut(s)	332, 377
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	2 cut(s)	415, 494
BciVI	GTATCC	1 cut(s)	801
BclI	TGATCA	1 cut(s)	558
BcnI	CCSGG	3 cut(s)	615, 664, 1121
BcoDI	GTCTC	3 cut(s)	481, 1580, 1911
BfaI	CTAG	5 cut(s)	1164, 1221, 1323, 1449, 1881
BfoI	RGCGCY	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	801
BisI	GCNGC	7 cut(s)	307, 310, 954, 1481, 1660, 1683, 1907
BlnI	CCTAGG	1 cut(s)	1880
BlsI	GCNGC	7 cut(s)	308, 311, 955, 1482, 1661, 1684, 1908
Bme1390I	CCNGG	5 cut(s)	415, 494, 615, 664, 1121
Bme18I	GGWCC	4 cut(s)	289, 642, 907, 1342
BmeRI	GACNNNNNGTC	1 cut(s)	56
BmeT110I	CYCGRG	2 cut(s)	1511, 1543
BmgBI	CACGTC	1 cut(s)	361
BmiI	GGNNCC	6 cut(s)	13, 290, 446, 909, 963, 1893
BmrFI	CCNGG	5 cut(s)	415, 494, 615, 664, 1121
BmsI	GCATC	4 cut(s)	73, 1219, 1524, 1804
BmtI	GCTAGC	1 cut(s)	1452
BoxI	GACNNNNGTC	1 cut(s)	1740
BpiI	GAAGAC	2 cut(s)	431, 1941
BplI	GAGNNNNNCTC	4 cut(s)	461, 493, 1537, 1569
BpmI	CTGGAG	2 cut(s)	476, 1416
Bpu10I	CCTNAGC	1 cut(s)	957
Bpu14I	TTCGAA	2 cut(s)	705, 1004
BpuEI	CTTGAG	1 cut(s)	1980
BpuMI	CCSGG	3 cut(s)	615, 664, 1121
BsaAI	YACGTR	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	1506
BsaI	GGTCTC	1 cut(s)	1580
BsaJI	CCNNGG	5 cut(s)	468, 601, 839, 1590, 1880
BsaWI	WCCGGW	2 cut(s)	648, 904
BsaXI	ACNNNNNCTCC	8 cut(s)	9, 39, 319, 349, 362, 392, 1389, 1419
Bsc4I	CCNNNNNNNGG	4 cut(s)	210, 456, 971, 1148
Bse118I	RCCGGY	3 cut(s)	260, 323, 568
Bse1I	ACTGG	3 cut(s)	433, 839, 1399
Bse21I	CCTNAGG	1 cut(s)	945
Bse3DI	GCAATG	1 cut(s)	1517
Bse8I	GATNNNNATC	1 cut(s)	1506
BseAI	TCCGGA	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	415, 494
BseDI	CCNNGG	5 cut(s)	468, 601, 839, 1590, 1880
BseGI	GGATG	6 cut(s)	236, 645, 721, 1159, 1234, 1806
BseJI	GATNNNNATC	1 cut(s)	1506
BseLI	CCNNNNNNNGG	4 cut(s)	210, 456, 971, 1148
BseMI	GCAATG	1 cut(s)	1517
BseMII	CTCAG	6 cut(s)	805, 934, 936, 1062, 1742, 1753
BseNI	ACTGG	3 cut(s)	433, 839, 1399
BseRI	GAGGAG	2 cut(s)	164, 365
BseSI	GKGCMC	1 cut(s)	14
BseX3I	CGGCCG	1 cut(s)	616
BseXI	GCAGC	5 cut(s)	293, 296, 965, 1669, 1671
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	4 cut(s)	560, 771, 1510, 1758
Bsh1236I	CGCG	2 cut(s)	111, 1734
Bsh1285I	CGRYCG	1 cut(s)	619
BshNI	GGYRCC	2 cut(s)	11, 961
BsiEI	CGRYCG	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	799
BsiHKCI	CYCGRG	2 cut(s)	1511, 1543
BslFI	GGGAC	2 cut(s)	1441, 1818
BslI	CCNNNNNNNGG	4 cut(s)	210, 456, 971, 1148
BsmAI	GTCTC	3 cut(s)	481, 1580, 1911
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	2 cut(s)	1441, 1818
BsmI	GAATGC	1 cut(s)	628
Bso31I	GGTCTC	1 cut(s)	1580
BsoBI	CYCGRG	2 cut(s)	1511, 1543
Bsp119I	TTCGAA	2 cut(s)	705, 1004
Bsp1286I	GDGCHC	3 cut(s)	14, 449, 799
Bsp13I	TCCGGA	1 cut(s)	648
Bsp143I	GATC	7 cut(s)	558, 1027, 1507, 1789, 1851, 1897, 1964
Bsp19I	CCATGG	2 cut(s)	601, 1590
BspACI	CCGC	7 cut(s)	15, 109, 340, 484, 1480, 1732, 1906
BspCNI	CTCAG	6 cut(s)	804, 933, 937, 1063, 1743, 1752
BspEI	TCCGGA	1 cut(s)	648
BspFNI	CGCG	2 cut(s)	111, 1734
BspHI	TCATGA	1 cut(s)	1900
BspLI	GGNNCC	6 cut(s)	13, 290, 446, 909, 963, 1893
BspOI	GCTAGC	1 cut(s)	1452
BspPI	GGATC	3 cut(s)	1035, 1502, 1846
BspT104I	TTCGAA	2 cut(s)	705, 1004
BspT107I	GGYRCC	2 cut(s)	11, 961
BspTNI	GGTCTC	1 cut(s)	1580
BsrBI	CCGCTC	1 cut(s)	1906
BsrDI	GCAATG	1 cut(s)	1517
BsrFI	RCCGGY	3 cut(s)	260, 323, 568
BsrI	ACTGG	3 cut(s)	433, 839, 1399
BssAI	RCCGGY	3 cut(s)	260, 323, 568
BssECI	CCNNGG	5 cut(s)	468, 601, 839, 1590, 1880
BssMI	GATC	7 cut(s)	558, 1027, 1507, 1789, 1851, 1897, 1964
BssT1I	CCWWGG	3 cut(s)	601, 1590, 1880
Bst2UI	CCWGG	2 cut(s)	415, 494
Bst4CI	ACNGT	3 cut(s)	634, 980, 1677
Bst6I	CTCTTC	3 cut(s)	124, 232, 1035
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	319
BstBI	TTCGAA	2 cut(s)	705, 1004
BstC8I	GCNNGC	5 cut(s)	109, 747, 1143, 1450, 1485
BstDEI	CTNAG	7 cut(s)	791, 920, 945, 957, 1071, 1739, 1751
BstDSI	CCRYGG	2 cut(s)	601, 1590
BstF5I	GGATG	6 cut(s)	236, 645, 721, 1159, 1234, 1806
BstFNI	CGCG	2 cut(s)	111, 1734
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	4 cut(s)	75, 113, 306, 314
BstKTI	GATC	7 cut(s)	561, 1030, 1510, 1792, 1854, 1900, 1967
BstMAI	GTCTC	3 cut(s)	481, 1580, 1911
BstMBI	GATC	7 cut(s)	558, 1027, 1507, 1789, 1851, 1897, 1964
BstMCI	CGRYCG	1 cut(s)	619
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 794
BstNI	CCWGG	2 cut(s)	415, 494
BstNSI	RCATGY	1 cut(s)	1846
BstPAI	GACNNNNGTC	1 cut(s)	1740
BstSCI	CCNGG	5 cut(s)	413, 492, 613, 662, 1119
BstSLI	GKGCMC	1 cut(s)	14
BstUI	CGCG	2 cut(s)	111, 1734
BstV1I	GCAGC	5 cut(s)	293, 296, 965, 1669, 1671
BstV2I	GAAGAC	2 cut(s)	431, 1941
BstX2I	RGATCY	1 cut(s)	1507
BstYI	RGATCY	1 cut(s)	1507
BstZI	CGGCCG	1 cut(s)	616
Bsu36I	CCTNAGG	1 cut(s)	945
BsuI	GTATCC	1 cut(s)	801
BtgI	CCRYGG	2 cut(s)	601, 1590
BtgZI	GCGATG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	6 cut(s)	236, 645, 721, 1159, 1234, 1806
BtsI	GCAGTG	4 cut(s)	44, 756, 823, 1239
BtsIMutI	CAGTG	9 cut(s)	44, 630, 700, 756, 823, 832, 1239, 1392, 1748
Cac8I	GCNNGC	5 cut(s)	109, 747, 1143, 1450, 1485
CaiI	CAGNNNCTG	2 cut(s)	1394, 1445
CciI	TCATGA	1 cut(s)	1900
CfoI	GCGC	4 cut(s)	75, 113, 306, 314
Cfr10I	RCCGGY	3 cut(s)	260, 323, 568
Csp6I	GTAC	5 cut(s)	667, 962, 1384, 1603, 2103
CviAII	CATG	6 cut(s)	602, 1591, 1843, 1901, 2081, 2106
CviQI	GTAC	5 cut(s)	667, 962, 1384, 1603, 2103
DdeI	CTNAG	7 cut(s)	791, 920, 945, 957, 1071, 1739, 1751
DpnI	GATC	7 cut(s)	560, 1029, 1509, 1791, 1853, 1899, 1966
DpnII	GATC	7 cut(s)	558, 1027, 1507, 1789, 1851, 1897, 1964
DrdI	GACNNNNNNGTC	1 cut(s)	287
DriI	GACNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	3 cut(s)	616, 836, 1127
EagI	CGGCCG	1 cut(s)	616
Eam1104I	CTCTTC	3 cut(s)	124, 232, 1035
Eam1105I	GACNNNNNGTC	1 cut(s)	56
EarI	CTCTTC	3 cut(s)	124, 232, 1035
EclXI	CGGCCG	1 cut(s)	616
Eco130I	CCWWGG	3 cut(s)	601, 1590, 1880
Eco24I	GRGCYC	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	1580
Eco32I	GATATC	2 cut(s)	691, 2007
Eco47I	GGWCC	4 cut(s)	289, 642, 907, 1342
Eco47III	AGCGCT	1 cut(s)	305
Eco52I	CGGCCG	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	701
Eco72I	CACGTG	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	945
Eco88I	CYCGRG	2 cut(s)	1511, 1543
EcoO109I	RGGNCCY	2 cut(s)	289, 1217
EcoRI	GAATTC	1 cut(s)	1329
EcoRII	CCWGG	2 cut(s)	413, 492
EcoRV	GATATC	2 cut(s)	691, 2007
EcoT14I	CCWWGG	3 cut(s)	601, 1590, 1880
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	3 cut(s)	601, 1590, 1880
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	6 cut(s)	605, 1594, 1846, 1904, 2084, 2109
FaqI	GGGAC	2 cut(s)	1441, 1818
FatI	CATG	6 cut(s)	601, 1590, 1842, 1900, 2080, 2105
FauI	CCCGC	3 cut(s)	116, 347, 1739
FbaI	TGATCA	1 cut(s)	558
Fnu4HI	GCNGC	7 cut(s)	307, 310, 954, 1481, 1660, 1683, 1907
FokI	GGATG	6 cut(s)	223, 632, 728, 1166, 1241, 1813
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	7 cut(s)	307, 310, 954, 1481, 1660, 1683, 1907
FspAI	RTGCGCAY	1 cut(s)	74
FspBI	CTAG	5 cut(s)	1164, 1221, 1323, 1449, 1881
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	4 cut(s)	74, 112, 305, 313
GluI	GCNGC	7 cut(s)	307, 310, 954, 1481, 1660, 1683, 1907
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	2 cut(s)	476, 1416
HaeII	RGCGCY	1 cut(s)	307
HhaI	GCGC	4 cut(s)	75, 113, 306, 314
Hin1II	CATG	6 cut(s)	605, 1594, 1846, 1904, 2084, 2109
Hin6I	GCGC	4 cut(s)	73, 111, 304, 312
HinP1I	GCGC	4 cut(s)	73, 111, 304, 312
HinfI	GANTC	8 cut(s)	506, 585, 802, 991, 1079, 1275, 1546, 1654
HphI	GGTGA	4 cut(s)	250, 790, 836, 1511
Hpy166II	GTNNAC	3 cut(s)	352, 1386, 1748
Hpy188III	TCNNGA	9 cut(s)	527, 649, 727, 1201, 1511, 1837, 1895, 1901, 1997
Hpy8I	GTNNAC	3 cut(s)	352, 1386, 1748
Hpy99I	CGWCG	3 cut(s)	62, 398, 515
HpyAV	CCTTC	8 cut(s)	105, 232, 256, 589, 676, 853, 886, 1817
HpyCH4III	ACNGT	3 cut(s)	634, 980, 1677
HpyCH4IV	ACGT	3 cut(s)	318, 329, 360
HpyCH4V	TGCA	9 cut(s)	541, 788, 941, 1232, 1356, 1487, 1527, 1775, 1817
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 794
HpyF3I	CTNAG	7 cut(s)	791, 920, 945, 957, 1071, 1739, 1751
HpySE526I	ACGT	3 cut(s)	318, 329, 360
Hsp92II	CATG	6 cut(s)	605, 1594, 1846, 1904, 2084, 2109
HspAI	GCGC	4 cut(s)	73, 111, 304, 312
Kpn2I	TCCGGA	1 cut(s)	648
KpnI	GGTACC	1 cut(s)	965
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	7 cut(s)	558, 1027, 1507, 1789, 1851, 1897, 1964
LmnI	GCTCC	5 cut(s)	206, 444, 495, 651, 742
Lsp1109I	GCAGC	5 cut(s)	293, 296, 965, 1669, 1671
LweI	GCATC	4 cut(s)	73, 1219, 1524, 1804
MaeI	CTAG	5 cut(s)	1164, 1221, 1323, 1449, 1881
MaeII	ACGT	3 cut(s)	318, 329, 360
MaeIII	GTNAC	3 cut(s)	319, 1441, 1763
MalI	GATC	7 cut(s)	560, 1029, 1509, 1791, 1853, 1899, 1966
MbiI	CCGCTC	1 cut(s)	1906
MboI	GATC	7 cut(s)	558, 1027, 1507, 1789, 1851, 1897, 1964
MfeI	CAATTG	2 cut(s)	189, 1818
MflI	RGATCY	1 cut(s)	1507
MhlI	GDGCHC	3 cut(s)	14, 449, 799
MlyI	GAGTC	3 cut(s)	500, 1000, 1555
MmeI	TCCRAC	3 cut(s)	534, 1005, 1269
MroI	TCCGGA	1 cut(s)	648
MroXI	GAANNNNTTC	1 cut(s)	1827
MseI	TTAA	6 cut(s)	399, 1283, 1494, 1796, 1971, 1985
MslI	CAYNNNNRTG	1 cut(s)	1532
MspR9I	CCNGG	5 cut(s)	415, 494, 615, 664, 1121
MunI	CAATTG	2 cut(s)	189, 1818
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	2 cut(s)	415, 494
MvnI	CGCG	2 cut(s)	111, 1734
MwoI	GCNNNNNNNGC	2 cut(s)	70, 794
NciI	CCSGG	3 cut(s)	615, 664, 1121
NcoI	CCATGG	2 cut(s)	601, 1590
NdeII	GATC	7 cut(s)	558, 1027, 1507, 1789, 1851, 1897, 1964
NheI	GCTAGC	1 cut(s)	1448
NlaIII	CATG	6 cut(s)	605, 1594, 1846, 1904, 2084, 2109
NlaIV	GGNNCC	6 cut(s)	13, 290, 446, 909, 963, 1893
NmeAIII	GCCGAG	1 cut(s)	864
NmuCI	GTSAC	1 cut(s)	319
NsbI	TGCGCA	1 cut(s)	74
NspI	RCATGY	1 cut(s)	1846
NspV	TTCGAA	2 cut(s)	705, 1004
PaeR7I	CTCGAG	1 cut(s)	1543
PagI	TCATGA	1 cut(s)	1900
PciI	ACATGT	1 cut(s)	1842
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 510
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	1827
PfeI	GAWTC	5 cut(s)	585, 802, 1079, 1275, 1654
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	7 cut(s)	308, 311, 955, 1482, 1661, 1684, 1908
PleI	GAGTC	3 cut(s)	500, 999, 1554
PmaCI	CACGTG	1 cut(s)	319
PmlI	CACGTG	1 cut(s)	319
PpsI	GAGTC	3 cut(s)	500, 999, 1554
Ppu21I	YACGTR	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	289
PscI	ACATGT	1 cut(s)	1842
PshAI	GACNNNNGTC	1 cut(s)	1740
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	413, 492
PspCI	CACGTG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	413, 492
PspN4I	GGNNCC	6 cut(s)	13, 290, 446, 909, 963, 1893
PspPPI	RGGWCCY	1 cut(s)	289
PspXI	VCTCGAGB	1 cut(s)	1543
PstNI	CAGNNNCTG	2 cut(s)	1394, 1445
PsuI	RGATCY	1 cut(s)	1507
RsaI	GTAC	5 cut(s)	668, 963, 1385, 1604, 2104
RsaNI	GTAC	5 cut(s)	667, 962, 1384, 1603, 2103
RseI	CAYNNNNRTG	1 cut(s)	1532
SaqAI	TTAA	6 cut(s)	399, 1283, 1494, 1796, 1971, 1985
SatI	GCNGC	7 cut(s)	307, 310, 954, 1481, 1660, 1683, 1907
Sau3AI	GATC	7 cut(s)	558, 1027, 1507, 1789, 1851, 1897, 1964
SchI	GAGTC	3 cut(s)	500, 1000, 1555
ScrFI	CCNGG	5 cut(s)	415, 494, 615, 664, 1121
SduI	GDGCHC	3 cut(s)	14, 449, 799
SfaNI	GCATC	4 cut(s)	73, 1219, 1524, 1804
Sfr274I	CTCGAG	1 cut(s)	1543
SfuI	TTCGAA	2 cut(s)	705, 1004
SinI	GGWCC	4 cut(s)	289, 642, 907, 1342
SlaI	CTCGAG	1 cut(s)	1543
SmiMI	CAYNNNNRTG	1 cut(s)	1532
SmlI	CTYRAG	2 cut(s)	1543, 1995
SmoI	CTYRAG	2 cut(s)	1543, 1995
SsiI	CCGC	7 cut(s)	15, 109, 340, 484, 1480, 1732, 1906
SspI	AATATT	1 cut(s)	1784
SspMI	CTAG	5 cut(s)	1164, 1221, 1323, 1449, 1881
StyD4I	CCNGG	5 cut(s)	413, 492, 613, 662, 1119
StyI	CCWWGG	3 cut(s)	601, 1590, 1880
TaaI	ACNGT	3 cut(s)	634, 980, 1677
TaiI	ACGT	3 cut(s)	321, 332, 363
TauI	GCSGC	2 cut(s)	1483, 1909
TfiI	GAWTC	5 cut(s)	585, 802, 1079, 1275, 1654
Tru1I	TTAA	6 cut(s)	399, 1283, 1494, 1796, 1971, 1985
Tru9I	TTAA	6 cut(s)	399, 1283, 1494, 1796, 1971, 1985
TscAI	CASTG	9 cut(s)	51, 637, 700, 756, 823, 839, 1239, 1399, 1755
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	5 cut(s)	306, 309, 953, 1659, 1682
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	25, 427, 843, 1586
TspGWI	ACGGA	1 cut(s)	2023
TspRI	CASTG	9 cut(s)	51, 637, 700, 756, 823, 839, 1239, 1399, 1755
Van91I	CCANNNNNTGG	1 cut(s)	210
VpaK11BI	GGWCC	4 cut(s)	289, 642, 907, 1342
XapI	RAATTY	6 cut(s)	100, 275, 984, 1093, 1133, 1329
XceI	RCATGY	1 cut(s)	1846
XhoI	CTCGAG	1 cut(s)	1543
XmaJI	CCTAGG	1 cut(s)	1880
XmnI	GAANNNNTTC	1 cut(s)	1827
XspI	CTAG	5 cut(s)	1164, 1221, 1323, 1449, 1881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.