Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010836

Physical Location & Seq

Genomic Coordinates Forward (+)

8830227 .. 8831309

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000981

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTTGCCCATCCCCACCACCGATCACCACCACAATCCCTACGCTCATCTCCAGATACCTGTCCGGGTGCATAACCCCGACCTCCTCTCCCTCCGAAACGCCGTCGTTAAAGGTAACTATGCCTGGAACAAGAAGACCCACCAGTTCATTCGGAGCCCCAACGACAGGCCAAGCACCGAGGTCGTCTCCAAGCGGAAGCTCCAGGCTATGCTCGACTCTGACGAGCTGTGCTTTCAGGATAGGATTGTGCAGGAGGTGTTGCTGATGATCATTGAGCCGGTTTTTGAGGCCCGATTCTCACCGAAAGCCCATGGGTTTCGGCCAGGCCGGAATGCCCATACCGTTATTCTGACCATCCGCAGCAACTTCGTCAGGTACTTGTGGTTTCTGAAGGGAGATATCAGTGAAGTTTTCGAAAATGTGGATGGAAATGTGGTGATGGGTTGCTTGGAGCAGGCAGTGAGGGATAGGAAGATATTGGGTTTGGTGAAGTCTGCACTCAGAGCACCGAATCGGATACAGAGCAGTGATGGTGATGAACAATGGCCAAGGAAGAAGAAGAAGATTTTGAATGGGAAGGAAGCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000374 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006521 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009889 GO:0009894 GO:0009987 GO:0010228 GO:0010467 GO:0010556 GO:0010565 GO:0010675 GO:0010896 GO:0010962 GO:0016043 GO:0016070 GO:0016071 GO:0019216 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031329 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033238 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050994 GO:0051171 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1901360 GO:2000112 GO:2001006

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

197

Amino Acids

22.55

Weight (kDa)

9.82

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30010
fragaria_vesca	FvH4_3g05620 FvH4_3g05620 FvH4_3g05620
malus_domestica	MD05G1284200.v1.1 MD10G1262500.v1.1 MD10G1262600.v1.1
pyrus_communis	pycom05g26330 pycom10g21870
rosa_chinensis	RchiOBHm_Chr5g0014061
rosa_laevigata	RLG00000000981 RLG00000032078
rosa_roxburghii	Rroxscaffold_1G00062550
rosa_rugosa	Rorug05G0015200
rosa_samantha	Rh5AG109300 Rh5BG106000 Rh5BG249100 Rh5CG117800 Rh5DG104800
rosa_wichuraiana	Rw2G053790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	193, 358
AcoI	YGGCCR	2 cut(s)	320, 545
AcuI	CTGAAG	1 cut(s)	410
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	571
AjnI	CCWGG	3 cut(s)	122, 201, 322
AluBI	AGCT	2 cut(s)	199, 226
AluI	AGCT	2 cut(s)	199, 226
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	1 cut(s)	190
AoxI	GGCC	5 cut(s)	167, 288, 320, 325, 545
ApeKI	GCWGC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	5 cut(s)	17, 291, 448, 499, 545
AsuII	TTCGAA	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	5 cut(s)	17, 362, 419, 433, 524
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	4 cut(s)	163, 197, 349, 383
BciT130I	CCWGG	3 cut(s)	124, 203, 324
BciVI	GTATCC	1 cut(s)	510
BclI	TGATCA	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme1390I	CCNGG	4 cut(s)	65, 124, 203, 324
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	4 cut(s)	65, 124, 203, 324
BpiI	GAAGAC	1 cut(s)	140
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	2 cut(s)	35, 185
Bpu14I	TTCGAA	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	177, 310, 548
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	142
BseBI	CCWGG	3 cut(s)	124, 203, 324
BseDI	CCNNGG	3 cut(s)	177, 310, 548
BseGI	GGATG	3 cut(s)	9, 354, 430
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	514
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	372
BsgI	GTGCAG	2 cut(s)	269, 480
BshFI	GGCC	5 cut(s)	169, 290, 322, 327, 547
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	3 cut(s)	64, 278, 328
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	190
BsmBI	CGTCTC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	5 cut(s)	169, 290, 322, 327, 547
Bsp119I	TTCGAA	1 cut(s)	414
Bsp1286I	GDGCHC	2 cut(s)	158, 508
Bsp143I	GATC	2 cut(s)	22, 267
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	2 cut(s)	193, 358
BspANI	GGCC	5 cut(s)	169, 290, 322, 327, 547
BspCNI	CTCAG	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	177, 310, 548
BssMI	GATC	2 cut(s)	22, 267
BssT1I	CCWWGG	2 cut(s)	310, 548
Bst2UI	CCWGG	3 cut(s)	124, 203, 324
Bst4CI	ACNGT	1 cut(s)	343
BstBI	TTCGAA	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	500
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	3 cut(s)	9, 354, 430
BstKTI	GATC	2 cut(s)	25, 270
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	22, 267
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	3 cut(s)	124, 203, 324
BstSCI	CCNGG	4 cut(s)	63, 122, 201, 322
BstV1I	GCAGC	1 cut(s)	372
BstV2I	GAAGAC	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	5 cut(s)	169, 290, 322, 327, 547
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	3 cut(s)	9, 354, 430
BtsI	GCAGTG	2 cut(s)	465, 532
BtsIMutI	CAGTG	3 cut(s)	409, 465, 532
Cac8I	GCNNGC	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	1 cut(s)	311
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	2 cut(s)	24, 269
DpnII	GATC	2 cut(s)	22, 267
EaeI	YGGCCR	2 cut(s)	320, 545
Eco130I	CCWWGG	2 cut(s)	310, 548
Eco24I	GRGCYC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	410
EcoRII	CCWGG	3 cut(s)	122, 201, 322
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	310, 548
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	2 cut(s)	310, 548
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	1 cut(s)	314
FaiI	YATR	5 cut(s)	72, 120, 209, 312, 339
FatI	CATG	1 cut(s)	310
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	2 cut(s)	341, 437
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	361
GsuI	CTGGAG	2 cut(s)	35, 185
HaeIII	GGCC	5 cut(s)	169, 290, 322, 327, 547
HapII	CCGG	3 cut(s)	64, 278, 328
Hin1II	CATG	1 cut(s)	314
HinfI	GANTC	3 cut(s)	215, 294, 511
HpaII	CCGG	3 cut(s)	64, 278, 328
HphI	GGTGA	5 cut(s)	17, 291, 448, 499, 545
Hpy188I	TCNGA	7 cut(s)	95, 153, 220, 351, 390, 503, 516
Hpy188III	TCNNGA	2 cut(s)	52, 236
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	385, 571
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	3 cut(s)	70, 250, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	1 cut(s)	500
Hsp92II	CATG	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	22, 267
LmnI	GCTCC	3 cut(s)	153, 204, 451
Lsp1109I	GCAGC	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	24, 269
MboI	GATC	2 cut(s)	22, 267
MboII	GAAGA	6 cut(s)	145, 484, 565, 568, 571, 574
MhlI	GDGCHC	2 cut(s)	158, 508
MlsI	TGGCCA	1 cut(s)	547
MluNI	TGGCCA	1 cut(s)	547
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	92, 95, 101, 172, 247, 280, 456
Mox20I	TGGCCA	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	547
MseI	TTAA	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	547
MspI	CCGG	3 cut(s)	64, 278, 328
MspR9I	CCNGG	4 cut(s)	65, 124, 203, 324
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	3 cut(s)	124, 203, 324
MwoI	GCNNNNNNNGC	1 cut(s)	503
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	2 cut(s)	22, 267
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	294, 511
PkrI	GCNGC	1 cut(s)	362
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp6I	CCWGG	3 cut(s)	122, 201, 322
PspGI	CCWGG	3 cut(s)	122, 201, 322
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	289
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	2 cut(s)	22, 267
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	4 cut(s)	65, 124, 203, 324
SduI	GDGCHC	2 cut(s)	158, 508
SetI	ASST	8 cut(s)	61, 84, 115, 183, 201, 228, 258, 377
SfuI	TTCGAA	1 cut(s)	414
SsiI	CCGC	2 cut(s)	193, 358
StyD4I	CCNGG	4 cut(s)	63, 122, 201, 322
StyI	CCWWGG	2 cut(s)	310, 548
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	213, 414
TfiI	GAWTC	2 cut(s)	294, 511
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	3 cut(s)	409, 465, 532
TseI	GCWGC	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	136, 552
TspRI	CASTG	3 cut(s)	409, 465, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.