Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010836

Physical Location & Seq

Genomic Coordinates Reverse (-)

35706546 .. 35707157

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1262600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTCGCTCTCCACCCCGCCGCCGTCGCCCAAGCCACCGCCGTCAAAGCTAGACCAGCAAGACCCGTACTCGCTCCTCAAGCAAGACCCAATCGAAATCTGCTCTTCTCTGTGGGTCAAGGCATTCTCTTCCCCAACCTCACCGGCTTCCTCTCCAAATTCGGCCTCTGGGTATTGGCCTACCAGCGCTCCTGCGCCCACGTGACCGGCATGTTCCCGCCCCGCAGCGCCATCCACTCCCGCGTCCTCCATGACCTCCTCTCCCTCCGAAACGCCGTTGTTCGGGGGAGTTTCTCCTGGAACAAGAAGACCCAGCAGTACATTCGAAGCCCCAATGACAAACCCAGCAAAGAGATGGTATCTAAGCGTAAACTCCGGGCTATGCTCGAGGCCGACGAGCCCTGCTTCCAAGACCGGGTCGTTCAGGAGGTCCTTTTGATGATATTGGAGCCTGTTTTCGGGGCCTGGTTTTCGCCAAAGTCCCACGCTTTTCGACCCGGAAGGAATGCCCACACGGTTATTCGGACCATCCGGAGCAACTTCCCCGGGTACTTGTGGTTTCTGAAGGAGATATCAGTGAGATTTTTTACAATGTGGATAGGAATTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000374 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006521 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009889 GO:0009894 GO:0009987 GO:0010228 GO:0010467 GO:0010556 GO:0010565 GO:0010675 GO:0010896 GO:0010962 GO:0016043 GO:0016070 GO:0016071 GO:0019216 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031329 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033238 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050994 GO:0051171 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1901360 GO:2000112 GO:2001006

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

204

Amino Acids

23.04

Weight (kDa)

11.25

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30010
fragaria_vesca	FvH4_3g05620 FvH4_3g05620 FvH4_3g05620
malus_domestica	MD05G1284200.v1.1 MD10G1262500.v1.1 MD10G1262600.v1.1
pyrus_communis	pycom05g26330 pycom10g21870
rosa_chinensis	RchiOBHm_Chr5g0014061
rosa_laevigata	RLG00000000981 RLG00000032078
rosa_roxburghii	Rroxscaffold_1G00062550
rosa_rugosa	Rorug05G0015200
rosa_samantha	Rh5AG109300 Rh5BG106000 Rh5BG249100 Rh5CG117800 Rh5DG104800
rosa_wichuraiana	Rw2G053790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	243
AccIII	TCCGGA	1 cut(s)	531
AciI	CCGC	6 cut(s)	18, 21, 39, 218, 223, 241
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	584
AcvI	CACGTG	1 cut(s)	202
AfaI	GTAC	3 cut(s)	69, 320, 551
AfeI	AGCGCT	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	282, 415, 458
AjnI	CCWGG	2 cut(s)	296, 464
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Ama87I	CYCGRG	2 cut(s)	386, 545
Aor13HI	TCCGGA	1 cut(s)	531
Aor51HI	AGCGCT	1 cut(s)	188
AoxI	GGCC	4 cut(s)	163, 177, 390, 462
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	3 cut(s)	189, 197, 230
AspS9I	GGNCC	3 cut(s)	430, 462, 525
AsuC2I	CCSGG	5 cut(s)	377, 416, 498, 546, 547
AsuHPI	GGTGA	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	325
AvaI	CYCGRG	2 cut(s)	386, 545
AvaII	GGWCC	2 cut(s)	430, 525
BanII	GRGCYC	1 cut(s)	402
BbrPI	CACGTG	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	3 cut(s)	239, 349, 536
BceAI	ACGGC	3 cut(s)	8, 26, 260
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	2 cut(s)	298, 466
BcnI	CCSGG	5 cut(s)	377, 416, 498, 546, 547
BfaI	CTAG	1 cut(s)	51
BfoI	RGCGCY	2 cut(s)	190, 231
BisI	GCNGC	2 cut(s)	21, 226
BlsI	GCNGC	2 cut(s)	22, 227
Bme1390I	CCNGG	7 cut(s)	298, 377, 416, 466, 498, 546, 547
Bme18I	GGWCC	2 cut(s)	430, 525
BmeT110I	CYCGRG	2 cut(s)	386, 545
BmgT120I	GGNCC	3 cut(s)	430, 462, 525
BmiI	GGNNCC	2 cut(s)	450, 463
BmrFI	CCNGG	7 cut(s)	298, 377, 416, 466, 498, 546, 547
BpiI	GAAGAC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	63
BpuMI	CCSGG	5 cut(s)	377, 416, 498, 546, 547
BsaAI	YACGTR	2 cut(s)	202, 609
BsaJI	CCNNGG	2 cut(s)	544, 545
BsaWI	WCCGGW	1 cut(s)	531
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 245, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 415, 458
Bse118I	RCCGGY	2 cut(s)	143, 206
BseAI	TCCGGA	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	298, 466
BseDI	CCNNGG	2 cut(s)	544, 545
BseGI	GGATG	2 cut(s)	231, 528
BseLI	CCNNNNNNNGG	3 cut(s)	282, 415, 458
BseRI	GAGGAG	2 cut(s)	66, 248
BseXI	GCAGC	1 cut(s)	237
BseYI	CCCAGC	2 cut(s)	312, 344
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	4 cut(s)	165, 179, 392, 464
BsiHKCI	CYCGRG	2 cut(s)	386, 545
BsiSI	CCGG	7 cut(s)	144, 207, 376, 415, 498, 532, 546
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	3 cut(s)	282, 415, 458
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	2 cut(s)	123, 511
BsnI	GGCC	4 cut(s)	165, 179, 392, 464
BsoBI	CYCGRG	2 cut(s)	386, 545
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	531
BspACI	CCGC	6 cut(s)	18, 21, 39, 218, 223, 241
BspANI	GGCC	4 cut(s)	165, 179, 392, 464
BspEI	TCCGGA	1 cut(s)	531
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	450, 463
BspQI	GCTCTTC	1 cut(s)	110
BspT104I	TTCGAA	1 cut(s)	325
BsrFI	RCCGGY	2 cut(s)	143, 206
BssAI	RCCGGY	2 cut(s)	143, 206
BssECI	CCNNGG	2 cut(s)	544, 545
Bst2UI	CCWGG	2 cut(s)	298, 466
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	2 cut(s)	110, 134
BstBAI	YACGTR	2 cut(s)	202, 609
BstBI	TTCGAA	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	231, 528
BstFNI	CGCG	1 cut(s)	243
BstH2I	RGCGCY	2 cut(s)	190, 231
BstHHI	GCGC	3 cut(s)	189, 197, 230
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 47, 56, 80
BstNI	CCWGG	2 cut(s)	298, 466
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	7 cut(s)	296, 375, 414, 464, 496, 544, 545
BstSNI	TACGTA	1 cut(s)	609
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	314
BsuRI	GGCC	4 cut(s)	165, 179, 392, 464
BtsCI	GGATG	2 cut(s)	231, 528
BtsIMutI	CAGTG	1 cut(s)	582
CfoI	GCGC	3 cut(s)	189, 197, 230
Cfr10I	RCCGGY	2 cut(s)	143, 206
Cfr13I	GGNCC	3 cut(s)	430, 462, 525
Cfr9I	CCCGGG	1 cut(s)	545
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	3 cut(s)	68, 319, 550
CviAII	CATG	2 cut(s)	211, 251
CviQI	GTAC	3 cut(s)	68, 319, 550
DdeI	CTNAG	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	110, 134
EarI	CTCTTC	2 cut(s)	110, 134
Eco105I	TACGTA	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	573
Eco47I	GGWCC	2 cut(s)	430, 525
Eco47III	AGCGCT	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	584
Eco72I	CACGTG	1 cut(s)	202
Eco88I	CYCGRG	2 cut(s)	386, 545
EcoO109I	RGGNCCY	2 cut(s)	430, 462
EcoRII	CCWGG	2 cut(s)	296, 464
EcoRV	GATATC	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	2 cut(s)	214, 254
FaiI	YATR	3 cut(s)	212, 252, 383
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	2 cut(s)	210, 250
FauI	CCCGC	4 cut(s)	25, 225, 230, 248
Fnu4HI	GCNGC	2 cut(s)	21, 226
FokI	GGATG	2 cut(s)	218, 515
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	2 cut(s)	21, 226
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	3 cut(s)	188, 196, 229
GluI	GCNGC	2 cut(s)	21, 226
GsaI	CCCAGC	2 cut(s)	316, 348
HaeII	RGCGCY	2 cut(s)	190, 231
HaeIII	GGCC	4 cut(s)	165, 179, 392, 464
HapII	CCGG	7 cut(s)	144, 207, 376, 415, 498, 532, 546
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	3 cut(s)	189, 197, 230
Hin1II	CATG	2 cut(s)	214, 254
Hin6I	GCGC	3 cut(s)	187, 195, 228
HinP1I	GCGC	3 cut(s)	187, 195, 228
HpaII	CCGG	7 cut(s)	144, 207, 376, 415, 498, 532, 546
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	3 cut(s)	269, 525, 564
Hpy188III	TCNNGA	2 cut(s)	425, 532
Hpy8I	GTNNAC	1 cut(s)	371
Hpy99I	CGWCG	2 cut(s)	29, 398
HpyAV	CCTTC	2 cut(s)	495, 559
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	201, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 47, 56, 80
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	2 cut(s)	201, 608
Hsp92II	CATG	2 cut(s)	214, 254
HspAI	GCGC	3 cut(s)	187, 195, 228
Kpn2I	TCCGGA	1 cut(s)	531
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	4 cut(s)	79, 194, 448, 534
Lsp1109I	GCAGC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	2 cut(s)	201, 608
MaeIII	GTNAC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	97, 121, 319
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	2 cut(s)	158, 603
MroI	TCCGGA	1 cut(s)	531
MspI	CCGG	7 cut(s)	144, 207, 376, 415, 498, 532, 546
MspR9I	CCNGG	7 cut(s)	298, 377, 416, 466, 498, 546, 547
Mva1269I	GAATGC	2 cut(s)	123, 511
MvaI	CCWGG	2 cut(s)	298, 466
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	4 cut(s)	26, 47, 56, 80
NciI	CCSGG	5 cut(s)	377, 416, 498, 546, 547
NlaIII	CATG	2 cut(s)	214, 254
NlaIV	GGNNCC	2 cut(s)	450, 463
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	325
PaeR7I	CTCGAG	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	2 cut(s)	123, 511
PflFI	GACNNNGTC	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	22, 227
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
Ppu21I	YACGTR	2 cut(s)	202, 609
PpuMI	RGGWCCY	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	430
Psp6I	CCWGG	2 cut(s)	296, 464
PspCI	CACGTG	1 cut(s)	202
PspFI	CCCAGC	2 cut(s)	312, 344
PspGI	CCWGG	2 cut(s)	296, 464
PspN4I	GGNNCC	2 cut(s)	450, 463
PspPI	GGNCC	3 cut(s)	430, 462, 525
PspPPI	RGGWCCY	1 cut(s)	430
PspXI	VCTCGAGB	1 cut(s)	386
PsyI	GACNNNGTC	1 cut(s)	416
RsaI	GTAC	3 cut(s)	69, 320, 551
RsaNI	GTAC	3 cut(s)	68, 319, 550
SapI	GCTCTTC	1 cut(s)	110
SatI	GCNGC	2 cut(s)	21, 226
Sau96I	GGNCC	3 cut(s)	430, 462, 525
ScrFI	CCNGG	7 cut(s)	298, 377, 416, 466, 498, 546, 547
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	6 cut(s)	52, 141, 204, 258, 432, 611
Sfr274I	CTCGAG	1 cut(s)	386
SfuI	TTCGAA	1 cut(s)	325
SinI	GGWCC	2 cut(s)	430, 525
SlaI	CTCGAG	1 cut(s)	386
SmaI	CCCGGG	1 cut(s)	547
SmlI	CTYRAG	2 cut(s)	78, 386
SmoI	CTYRAG	2 cut(s)	78, 386
SnaBI	TACGTA	1 cut(s)	609
Sse9I	AATT	2 cut(s)	158, 603
SsiI	CCGC	6 cut(s)	18, 21, 39, 218, 223, 241
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	7 cut(s)	296, 375, 414, 464, 496, 544, 545
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	204, 611
TaqI	TCGA	4 cut(s)	94, 325, 387, 493
TasI	AATT	2 cut(s)	158, 603
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	23
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	202
TspMI	CCCGGG	1 cut(s)	545
TspRI	CASTG	1 cut(s)	582
Tth111I	GACNNNGTC	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	430, 525
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XhoI	CTCGAG	1 cut(s)	386
XmaI	CCCGGG	1 cut(s)	545
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.