Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010836

Physical Location & Seq

Genomic Coordinates Reverse (-)

81472284 .. 81479983

Gene Structure 7700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G053790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGACACCATTCTCTTGTCTATAAGTGTGTATATCAACAGTTCTGTGTTCCTTAAGCAAAAGCAGACCTCGCCTAAGGCAGCCAGTAATTCCACAGAGGAAACAGTGGTTCATCCTCTCCCGACATTGATCCAGTACGTTGCTTGGCCCAACTCCTTTCCAGAAGAATTTACGCCTGGTGACTTGTACACGAGAAAGAGCCATTTAGACCTAAAGGACAGTTCTGGGCTTTGTGCCTCAATTGTACATGCAAATAAGCATAAAAATCCTACTAGAAATGAAGATGAAGTTGAAAACAAGGAATGTATTTCGGATGCTGAGATACCTGTCCGGGTGCATAACCCCGACCTCCTCTCCCTCCGAAACGCCGTCGTTAAAGGCAACTATGCCTGGAACAAGAAGACCCACCAGTTCATTTGGAGCCCCAACGACAGGCCCAGCACCGAGGTCGTCTCCAAACGGAAGCTCCAGGCTATGCTCGACTCCGACGAGCCGTGGTTTCAGGATAGGATTTTGCAGGAGGTGTTGCTGATGATCATTGAGCCGGTTTTCGAGGCCCGATTCTCGCCGAAAGCCCATGGGTTTCGGCCAGGCCGGAATGCCCACACCGTTATTCGGACCATCCGCAGCAACTTCGCCGGGTACTTGTGGTTTCTAAAGGGAGATATCAGTGAAGTTTTTGAAAATGTGGATGGAAATGTGGTGATGGGTTGCTTGGAGCAGGCAGTGAGGGATAGGAAGATATTGGGTTTGGTGAAATCTGCACTCAGAGCACCGAATCGGATACAGAGCAGTGATGGTGATGAACAATGGCCAAGGAAGAAGAAGAAGGTTTCGAAGACGAAGAAGATTTTGAATGGGAAGGAAGCGAAACCGGACCCCCTTGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000374 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006521 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009889 GO:0009894 GO:0009987 GO:0010228 GO:0010467 GO:0010556 GO:0010565 GO:0010675 GO:0010896 GO:0010962 GO:0016043 GO:0016070 GO:0016071 GO:0019216 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031329 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033238 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050994 GO:0051171 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1901360 GO:2000112 GO:2001006

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

297

Amino Acids

33.69

Weight (kDa)

9.19

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30010
fragaria_vesca	FvH4_3g05620 FvH4_3g05620 FvH4_3g05620
malus_domestica	MD05G1284200.v1.1 MD10G1262500.v1.1 MD10G1262600.v1.1
pyrus_communis	pycom05g26330 pycom10g21870
rosa_chinensis	RchiOBHm_Chr5g0014061
rosa_laevigata	RLG00000000981 RLG00000032078
rosa_roxburghii	Rroxscaffold_1G00062550
rosa_rugosa	Rorug05G0015200
rosa_samantha	Rh5AG109300 Rh5BG106000 Rh5BG249100 Rh5CG117800 Rh5DG104800
rosa_wichuraiana	Rw2G053790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	625
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	2 cut(s)	587, 812
AcsI	RAATTY	1 cut(s)	167
AfaI	GTAC	4 cut(s)	137, 188, 246, 644
AfiI	CCNNNNNNNGG	3 cut(s)	432, 615, 886
AflII	CTTAAG	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	293, 683, 856
AjnI	CCWGG	4 cut(s)	175, 389, 468, 589
AluBI	AGCT	1 cut(s)	466
AluI	AGCT	1 cut(s)	466
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	6 cut(s)	146, 434, 555, 587, 592, 812
ApeKI	GCWGC	2 cut(s)	80, 627
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	5 cut(s)	147, 435, 556, 618, 877
AsuC2I	CCSGG	2 cut(s)	332, 640
AsuHPI	GGTGA	4 cut(s)	191, 715, 766, 812
AsuII	TTCGAA	1 cut(s)	836
AvaII	GGWCC	2 cut(s)	618, 877
AxyI	CCTNAGG	1 cut(s)	75
BalI	TGGCCA	1 cut(s)	814
BanII	GRGCYC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	407, 845
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	2 cut(s)	92, 639
BccI	CCATC	4 cut(s)	629, 686, 700, 791
BceAI	ACGGC	2 cut(s)	353, 478
BcgI	CGANNNNNNTGC	4 cut(s)	430, 464, 616, 650
BciT130I	CCWGG	4 cut(s)	177, 391, 470, 591
BciVI	GTATCC	1 cut(s)	777
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	2 cut(s)	332, 640
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	53
BfuI	GTATCC	1 cut(s)	777
BisI	GCNGC	2 cut(s)	81, 628
BlsI	GCNGC	2 cut(s)	82, 629
Bme1390I	CCNGG	6 cut(s)	177, 332, 391, 470, 591, 640
Bme18I	GGWCC	2 cut(s)	618, 877
BmgT120I	GGNCC	5 cut(s)	147, 435, 556, 618, 877
BmiI	GGNNCC	2 cut(s)	422, 879
BmrFI	CCNGG	6 cut(s)	177, 332, 391, 470, 591, 640
BmsI	GCATC	1 cut(s)	304
BpiI	GAAGAC	2 cut(s)	407, 845
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
BpmI	CTGGAG	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	836
BpuMI	CCSGG	2 cut(s)	332, 640
BsaJI	CCNNGG	4 cut(s)	444, 494, 577, 815
BsaWI	WCCGGW	1 cut(s)	874
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 450, 480
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 615, 886
Bse118I	RCCGGY	1 cut(s)	544
Bse1I	ACTGG	3 cut(s)	84, 133, 409
Bse21I	CCTNAGG	1 cut(s)	75
BseBI	CCWGG	4 cut(s)	177, 391, 470, 591
BseDI	CCNNGG	4 cut(s)	444, 494, 577, 815
BseGI	GGATG	4 cut(s)	112, 319, 621, 697
BseLI	CCNNNNNNNGG	3 cut(s)	432, 615, 886
BseMII	CTCAG	2 cut(s)	309, 781
BseNI	ACTGG	3 cut(s)	84, 133, 409
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	92, 639
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	1 cut(s)	747
BshFI	GGCC	6 cut(s)	148, 436, 557, 589, 594, 814
BsiHKAI	GWGCWC	1 cut(s)	775
BsiSI	CCGG	5 cut(s)	331, 545, 595, 639, 875
BslI	CCNNNNNNNGG	3 cut(s)	432, 615, 886
BsmAI	GTCTC	1 cut(s)	457
BsmBI	CGTCTC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	6 cut(s)	148, 436, 557, 589, 594, 814
Bsp119I	TTCGAA	1 cut(s)	836
Bsp1286I	GDGCHC	2 cut(s)	425, 775
Bsp1407I	TGTACA	2 cut(s)	186, 244
Bsp143I	GATC	2 cut(s)	129, 534
Bsp19I	CCATGG	1 cut(s)	577
BspACI	CCGC	1 cut(s)	625
BspANI	GGCC	6 cut(s)	148, 436, 557, 589, 594, 814
BspCNI	CTCAG	2 cut(s)	310, 780
BspLI	GGNNCC	2 cut(s)	422, 879
BspPI	GGATC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	836
BspTI	CTTAAG	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	544
BsrGI	TGTACA	2 cut(s)	186, 244
BsrI	ACTGG	3 cut(s)	84, 133, 409
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	4 cut(s)	444, 494, 577, 815
BssMI	GATC	2 cut(s)	129, 534
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	577, 815
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	4 cut(s)	177, 391, 470, 591
Bst4CI	ACNGT	4 cut(s)	41, 106, 221, 610
BstAFI	CTTAAG	1 cut(s)	53
BstAUI	TGTACA	2 cut(s)	186, 244
BstBI	TTCGAA	1 cut(s)	836
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	3 cut(s)	75, 318, 767
BstDSI	CCRYGG	2 cut(s)	494, 577
BstF5I	GGATG	4 cut(s)	112, 319, 621, 697
BstKTI	GATC	2 cut(s)	132, 537
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	2 cut(s)	129, 534
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 770
BstNI	CCWGG	4 cut(s)	177, 391, 470, 591
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	6 cut(s)	175, 330, 389, 468, 589, 638
BstV1I	GCAGC	2 cut(s)	92, 639
BstV2I	GAAGAC	2 cut(s)	407, 845
Bsu36I	CCTNAGG	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	777
BsuRI	GGCC	6 cut(s)	148, 436, 557, 589, 594, 814
BtgI	CCRYGG	2 cut(s)	494, 577
BtsCI	GGATG	4 cut(s)	112, 319, 621, 697
BtsI	GCAGTG	2 cut(s)	732, 799
BtsIMutI	CAGTG	4 cut(s)	111, 676, 732, 799
Cac8I	GCNNGC	1 cut(s)	723
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	5 cut(s)	147, 435, 556, 618, 877
Csp6I	GTAC	4 cut(s)	136, 187, 245, 643
CviAII	CATG	2 cut(s)	248, 578
CviQI	GTAC	4 cut(s)	136, 187, 245, 643
DdeI	CTNAG	3 cut(s)	75, 318, 767
DpnI	GATC	2 cut(s)	131, 536
DpnII	GATC	2 cut(s)	129, 534
EaeI	YGGCCR	2 cut(s)	587, 812
Eco130I	CCWWGG	2 cut(s)	577, 815
Eco24I	GRGCYC	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	667
Eco47I	GGWCC	2 cut(s)	618, 877
Eco81I	CCTNAGG	1 cut(s)	75
EcoRII	CCWGG	4 cut(s)	175, 389, 468, 589
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	2 cut(s)	577, 815
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	2 cut(s)	577, 815
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	2 cut(s)	251, 581
FaiI	YATR	8 cut(s)	23, 33, 249, 261, 339, 387, 476, 579
FatI	CATG	2 cut(s)	247, 577
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	81, 628
FokI	GGATG	4 cut(s)	99, 326, 608, 704
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	2 cut(s)	81, 628
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	2 cut(s)	81, 628
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	6 cut(s)	148, 436, 557, 589, 594, 814
HapII	CCGG	5 cut(s)	331, 545, 595, 639, 875
Hin1II	CATG	2 cut(s)	251, 581
HinfI	GANTC	3 cut(s)	482, 561, 778
HpaII	CCGG	5 cut(s)	331, 545, 595, 639, 875
HphI	GGTGA	4 cut(s)	191, 715, 766, 812
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	6 cut(s)	313, 362, 487, 618, 770, 783
Hpy188III	TCNNGA	3 cut(s)	121, 161, 503
Hpy8I	GTNNAC	1 cut(s)	189
Hpy99I	CGWCG	2 cut(s)	374, 491
HpyAV	CCTTC	2 cut(s)	823, 856
HpyCH4III	ACNGT	4 cut(s)	41, 106, 221, 610
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	251, 337, 517, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 770
HpyF3I	CTNAG	3 cut(s)	75, 318, 767
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	251, 581
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	2 cut(s)	129, 534
LmnI	GCTCC	3 cut(s)	420, 471, 718
Lsp1109I	GCAGC	2 cut(s)	92, 639
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	131, 536
MboI	GATC	2 cut(s)	129, 534
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	2 cut(s)	425, 775
MlsI	TGGCCA	1 cut(s)	814
MluCI	AATT	3 cut(s)	88, 167, 240
MluNI	TGGCCA	1 cut(s)	814
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	510
Mox20I	TGGCCA	1 cut(s)	814
MscI	TGGCCA	1 cut(s)	814
MseI	TTAA	2 cut(s)	54, 375
Msp20I	TGGCCA	1 cut(s)	814
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	5 cut(s)	331, 545, 595, 639, 875
MspR9I	CCNGG	6 cut(s)	177, 332, 391, 470, 591, 640
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	4 cut(s)	177, 391, 470, 591
MwoI	GCNNNNNNNGC	2 cut(s)	70, 770
NciI	CCSGG	2 cut(s)	332, 640
NcoI	CCATGG	1 cut(s)	577
NdeII	GATC	2 cut(s)	129, 534
NlaIII	CATG	2 cut(s)	251, 581
NlaIV	GGNNCC	2 cut(s)	422, 879
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	1 cut(s)	251
NspV	TTCGAA	1 cut(s)	836
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PctI	GAATGC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	561, 778
PkrI	GCNGC	2 cut(s)	82, 629
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp6I	CCWGG	4 cut(s)	175, 389, 468, 589
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	4 cut(s)	175, 389, 468, 589
PspN4I	GGNNCC	2 cut(s)	422, 879
PspPI	GGNCC	5 cut(s)	147, 435, 556, 618, 877
RsaI	GTAC	4 cut(s)	137, 188, 246, 644
RsaNI	GTAC	4 cut(s)	136, 187, 245, 643
SaqAI	TTAA	2 cut(s)	54, 375
SatI	GCNGC	2 cut(s)	81, 628
Sau3AI	GATC	2 cut(s)	129, 534
Sau96I	GGNCC	5 cut(s)	147, 435, 556, 618, 877
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	6 cut(s)	177, 332, 391, 470, 591, 640
SduI	GDGCHC	2 cut(s)	425, 775
SetI	ASST	9 cut(s)	71, 141, 213, 328, 351, 450, 468, 525, 834
SfaNI	GCATC	1 cut(s)	304
SfuI	TTCGAA	1 cut(s)	836
SinI	GGWCC	2 cut(s)	618, 877
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	88, 167, 240
SsiI	CCGC	1 cut(s)	625
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	6 cut(s)	175, 330, 389, 468, 589, 638
StyI	CCWWGG	2 cut(s)	577, 815
TaaI	ACNGT	4 cut(s)	41, 106, 221, 610
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	480, 552, 836
TasI	AATT	3 cut(s)	88, 167, 240
TatI	WGTACW	2 cut(s)	186, 244
TfiI	GAWTC	2 cut(s)	561, 778
Tru1I	TTAA	2 cut(s)	54, 375
Tru9I	TTAA	2 cut(s)	54, 375
TscAI	CASTG	4 cut(s)	111, 676, 732, 799
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	80, 627
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	5 cut(s)	101, 294, 300, 403, 819
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	4 cut(s)	111, 676, 732, 799
Vha464I	CTTAAG	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	618, 877
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	251
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.