Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010836

Physical Location & Seq

Genomic Coordinates Reverse (-)

84662343 .. 84667772

Gene Structure 5430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGGGAAAGTTCACCGCACGCTCCCTCCCTCGCTTCCTCTTCTCACTGCGACCTTTCGTCGAGCACCTGGTGCGCACCTCCCATTTTCCCAGACCTTCAACTTTCGCTCGCGCTCTCTCTTCTTCCCTCACCGCCCCACCTGCTCTGAAAGACCAGCAAGACCCCTACGCCCTCCTCAAACAAGACCCAATTGAAATCTGCTCCAATCTCTGGGTCAAAGCCTTCTCTTCCCCACCATCCACCACCTTCCCCAACCTCACCGGCTTCCTCTCCAAATTCGACCTCTGGGTCCTCGCCTACCAGCGCTGCTGCGCCCACGTGACGGGCACGTTCCCTCCCCGCAACGCCGTCCACTCCCACGTCCTCCACGACCTCCTCTCCCTCCGAAACGCCGTCGTTAAAGGAACCTATGCCTGGAACAAGAAGACCCACCAGTTCATTCGGAGCCCCAACGACAAGCCCAGCACCGAGGTCGTCTCCAAGCGGAAGCTCCAGGCTATGCTCGAGTCCGACGAGCCTTGCTTTCAGGATAGGATTGTGCAGGAGGTGTTGCTGATGATCATTGAGCCGGTTTTCGAGGCCCGATTCTCGCCGAAAGCCCATGGGTTTCGGCCCGGCCGGAATGCCCACACTGTTATTCGGACCATCCGGAGCAACTTCGCCGGCTACTTGTGGTTTCTGAGGGGAGATATCAGTGAAGTTTTGGAAAATGTGGATGGAAATGTCGTGATGGGTTGCTTGGAGCAGGCAGTGAGGGATAGGAAGATATTGGGTTTGGTGAAATCTGCACTCAGAGCACCGAATCGGATACAGAGCAGTGATGGTGATGAACAATGGCCGAGGAAGAAGAAGAAGAAGGTTTCAAAGAAGAAGAAGATTTTGAATGAGAAGGAAGCGAAACCGGACCCGTATTGGCTCAGAACCTTTTTCAATTTTGCACCTGAGGAAGCAGCTAAGGTACCTTGTTATGGGAACTGTGGAATATTGAGTCCTTTACTTTCGAATGTGTGTCTGAATGAGTTGGATCAAGTTATGGAAGAGAAGATAGTTGAGTTTTTTAGGCCATCTGAGAGTGATTCTATATGGAAAAATTCGATTAATGATGGTTGTCATAACCCGGCTTGGCCGGAGTTTGTGCCTGCGAGTGGGGATGAGAAAACAAGGAAAATGGATTACATTAGGTATGGGGGTCATTTCTTGATTGGTATTCGAGGGCCTAGAGAGGATGCAGTGGATATGCGAAAGCAAATCATTGAGTTTTGTGAGAGAAGATTCGGGTTGAGGTTGGATAACTCTAAGTTGGAGATTGAACACATAACTAGGGGGATTCAGTTTTTGGACCATATAATTTGCAGGAGGGTTATACACCCTACACTAAGGTACACAGCCACTGGTGGAAATGTTGTGAGTGAAAAAGGTGTAGGGACTTTGCTTTCAGTTACTGCTAGCTTACAACAATGTATTCGCCAATTCCGGCGGCTTGCATTTGTTAAGGGTGATAAAGATCCCGAGCCATTGCCCTGCACTCCAATGCTTTACTCGAGTCAAGCTCATACTAACTCCCAGATGAATAAGTTATTGGAGACCATGGCTGATTGGTACAGATACGCTGATAATCGCAAGAAAGTTGTTGGTTTTTGTGCTTATGTGATTCGCAGCTCTTTGGGTAAACTGTATGCTGCAAGGTATAGACTAAAATCAAGGGCCAAAGTGTATAGTATAGCTACCCGCGATCTTAGTCGTCCACTGAGGGAGAGCAGTAACAACTCTGCACCTGAATATTCTGATCTATTAAGGATGGGACTTGTTGATGCAATTGAAGGTGTTCGGTTCTCGCACATGTCTTTGATCCCATCTTGTGATTACTCGCCATTTCCTAGGAATTGGGTTCCAGATCATGAGCGGCTCTTACAAGACTACATCAGACTTGAAGACCCAAAGTTCTTCTGTGCCTTACATAGATCAATTAAAAAAGATGGTTTAAGTTTGCCTCAAGATGAGATATCTGAACTTTTGTGGCATTTCAAATCCGTTGGGGTTCGGAACTATCTGCTAAAGGAGAAAAGGAAACAAAAACATGATGTCGTGGAAATGCATGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000374 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006521 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009889 GO:0009894 GO:0009987 GO:0010228 GO:0010467 GO:0010556 GO:0010565 GO:0010675 GO:0010896 GO:0010962 GO:0016043 GO:0016070 GO:0016071 GO:0019216 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031329 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033238 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050994 GO:0051171 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1901360 GO:2000112 GO:2001006

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

701

Amino Acids

80.45

Weight (kDa)

9.47

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30010
fragaria_vesca	FvH4_3g05620 FvH4_3g05620 FvH4_3g05620
malus_domestica	MD05G1284200.v1.1 MD10G1262500.v1.1 MD10G1262600.v1.1
pyrus_communis	pycom05g26330 pycom10g21870
rosa_chinensis	RchiOBHm_Chr5g0014061
rosa_laevigata	RLG00000000981 RLG00000032078
rosa_roxburghii	Rroxscaffold_1G00062550
rosa_rugosa	Rorug05G0015200
rosa_samantha	Rh5AG109300 Rh5BG106000 Rh5BG249100 Rh5CG117800 Rh5DG104800
rosa_wichuraiana	Rw2G053790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	148
AasI	GACNNNNNNGTC	1 cut(s)	287
Acc16I	TGCGCA	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	148
Acc65I	GGTACC	1 cut(s)	958
AccB1I	GGYRCC	1 cut(s)	958
AccB7I	CCANNNNNTGG	1 cut(s)	210
AccBSI	CCGCTC	1 cut(s)	1903
AccII	CGCG	2 cut(s)	111, 1731
AccIII	TCCGGA	1 cut(s)	648
AciI	CCGC	7 cut(s)	15, 132, 340, 484, 1477, 1729, 1903
AclWI	GGATC	3 cut(s)	1032, 1499, 1843
AcoI	YGGCCR	3 cut(s)	616, 836, 1124
AcsI	RAATTY	2 cut(s)	275, 1090
AcvI	CACGTG	1 cut(s)	319
AdeI	CACNNNGTG	1 cut(s)	70
AfaI	GTAC	4 cut(s)	960, 1382, 1601, 2101
AfeI	AGCGCT	1 cut(s)	305
AfiI	CCNNNNNNNGG	5 cut(s)	210, 322, 414, 968, 1145
AflIII	ACRYGT	1 cut(s)	1839
AgsI	TTSAA	9 cut(s)	99, 194, 864, 883, 931, 1310, 1820, 1931, 2026
AhdI	GACNNNNNGTC	1 cut(s)	56
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	3 cut(s)	66, 413, 492
AjuI	GAANNNNNNNTTGG	2 cut(s)	1562, 1594
AluBI	AGCT	6 cut(s)	490, 953, 1449, 1550, 1659, 1724
AluI	AGCT	6 cut(s)	490, 953, 1449, 1550, 1659, 1724
Alw21I	GWGCWC	2 cut(s)	66, 799
Alw26I	GTCTC	2 cut(s)	481, 1577
AlwI	GGATC	3 cut(s)	1032, 1499, 1843
AlwNI	CAGNNNCTG	2 cut(s)	1391, 1442
Ama87I	CYCGRG	3 cut(s)	503, 1508, 1540
Aor13HI	TCCGGA	1 cut(s)	648
Aor51HI	AGCGCT	1 cut(s)	305
AoxI	GGCC	8 cut(s)	579, 611, 616, 836, 1061, 1124, 1214, 1704
ApeKI	GCWGC	5 cut(s)	306, 309, 950, 1656, 1679
ApoI	RAATTY	2 cut(s)	275, 1090
AseI	ATTAAT	1 cut(s)	1098
Asp700I	GAANNNNTTC	1 cut(s)	1824
Asp718I	GGTACC	1 cut(s)	958
AspA2I	CCTAGG	1 cut(s)	1877
AspLEI	GCGC	4 cut(s)	75, 113, 306, 314
AspS9I	GGNCC	8 cut(s)	289, 580, 612, 642, 904, 1214, 1339, 1704
AsuC2I	CCSGG	2 cut(s)	615, 1118
AsuHPI	GGTGA	6 cut(s)	4, 121, 250, 790, 836, 1508
AsuII	TTCGAA	1 cut(s)	1001
AsuNHI	GCTAGC	1 cut(s)	1445
AvaI	CYCGRG	3 cut(s)	503, 1508, 1540
AvaII	GGWCC	4 cut(s)	289, 642, 904, 1339
AvrII	CCTAGG	1 cut(s)	1877
AxyI	CCTNAGG	1 cut(s)	942
BaeGI	GKGCMC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	958
BanII	GRGCYC	1 cut(s)	449
BbrPI	CACGTG	1 cut(s)	319
BbsI	GAAGAC	2 cut(s)	431, 1938
Bbv12I	GWGCWC	2 cut(s)	66, 799
BbvI	GCAGC	5 cut(s)	293, 296, 962, 1666, 1668
BceAI	ACGGC	2 cut(s)	332, 377
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	3 cut(s)	68, 415, 494
BciVI	GTATCC	1 cut(s)	801
BclI	TGATCA	1 cut(s)	558
BcnI	CCSGG	2 cut(s)	615, 1118
BcoDI	GTCTC	2 cut(s)	481, 1577
BfaI	CTAG	4 cut(s)	1218, 1320, 1446, 1878
BfoI	RGCGCY	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	148
BfuI	GTATCC	1 cut(s)	801
BisI	GCNGC	7 cut(s)	307, 310, 951, 1478, 1657, 1680, 1904
BlnI	CCTAGG	1 cut(s)	1877
BlsI	GCNGC	7 cut(s)	308, 311, 952, 1479, 1658, 1681, 1905
Bme1390I	CCNGG	5 cut(s)	68, 415, 494, 615, 1118
Bme18I	GGWCC	4 cut(s)	289, 642, 904, 1339
BmeRI	GACNNNNNGTC	1 cut(s)	56
BmeT110I	CYCGRG	3 cut(s)	503, 1508, 1540
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	8 cut(s)	289, 580, 612, 642, 904, 1214, 1339, 1704
BmiI	GGNNCC	6 cut(s)	290, 406, 446, 906, 960, 1890
BmrFI	CCNGG	5 cut(s)	68, 415, 494, 615, 1118
BmsI	GCATC	2 cut(s)	1216, 1801
BmtI	GCTAGC	1 cut(s)	1449
BpiI	GAAGAC	2 cut(s)	431, 1938
BplI	GAGNNNNNCTC	4 cut(s)	461, 493, 1534, 1566
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	954
Bpu14I	TTCGAA	1 cut(s)	1001
BpuEI	CTTGAG	1 cut(s)	1977
BpuMI	CCSGG	2 cut(s)	615, 1118
BsaAI	YACGTR	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	1503
BsaI	GGTCTC	1 cut(s)	1577
BsaJI	CCNNGG	5 cut(s)	468, 601, 839, 1587, 1877
BsaWI	WCCGGW	2 cut(s)	648, 901
BsaXI	ACNNNNNCTCC	6 cut(s)	9, 39, 319, 349, 362, 392
Bsc4I	CCNNNNNNNGG	5 cut(s)	210, 322, 414, 968, 1145
Bse118I	RCCGGY	3 cut(s)	260, 568, 662
Bse1I	ACTGG	2 cut(s)	433, 1396
Bse21I	CCTNAGG	1 cut(s)	942
Bse3DI	GCAATG	1 cut(s)	1514
Bse8I	GATNNNNATC	1 cut(s)	1503
BseAI	TCCGGA	1 cut(s)	648
BseBI	CCWGG	3 cut(s)	68, 415, 494
BseDI	CCNNGG	5 cut(s)	468, 601, 839, 1587, 1877
BseGI	GGATG	6 cut(s)	236, 645, 721, 1156, 1231, 1803
BseJI	GATNNNNATC	1 cut(s)	1503
BseLI	CCNNNNNNNGG	5 cut(s)	210, 322, 414, 968, 1145
BseMI	GCAATG	1 cut(s)	1514
BseMII	CTCAG	6 cut(s)	671, 805, 931, 933, 1059, 1739
BseNI	ACTGG	2 cut(s)	433, 1396
BseRI	GAGGAG	2 cut(s)	164, 365
BseSI	GKGCMC	1 cut(s)	329
BseX3I	CGGCCG	1 cut(s)	616
BseXI	GCAGC	5 cut(s)	293, 296, 962, 1666, 1668
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	4 cut(s)	560, 771, 1507, 1755
Bsh1236I	CGCG	2 cut(s)	111, 1731
Bsh1285I	CGRYCG	1 cut(s)	619
BshFI	GGCC	8 cut(s)	581, 613, 618, 838, 1063, 1126, 1216, 1706
BshNI	GGYRCC	1 cut(s)	958
BsiEI	CGRYCG	1 cut(s)	619
BsiHKAI	GWGCWC	2 cut(s)	66, 799
BsiHKCI	CYCGRG	3 cut(s)	503, 1508, 1540
BslFI	GGGAC	2 cut(s)	1438, 1815
BslI	CCNNNNNNNGG	5 cut(s)	210, 322, 414, 968, 1145
BsmAI	GTCTC	2 cut(s)	481, 1577
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	2 cut(s)	1438, 1815
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	8 cut(s)	581, 613, 618, 838, 1063, 1126, 1216, 1706
Bso31I	GGTCTC	1 cut(s)	1577
BsoBI	CYCGRG	3 cut(s)	503, 1508, 1540
Bsp119I	TTCGAA	1 cut(s)	1001
Bsp1286I	GDGCHC	4 cut(s)	66, 329, 449, 799
Bsp13I	TCCGGA	1 cut(s)	648
Bsp143I	GATC	8 cut(s)	558, 1024, 1504, 1732, 1786, 1848, 1894, 1961
Bsp19I	CCATGG	2 cut(s)	601, 1587
BspACI	CCGC	7 cut(s)	15, 132, 340, 484, 1477, 1729, 1903
BspANI	GGCC	8 cut(s)	581, 613, 618, 838, 1063, 1126, 1216, 1706
BspCNI	CTCAG	6 cut(s)	672, 804, 930, 934, 1060, 1740
BspEI	TCCGGA	1 cut(s)	648
BspFNI	CGCG	2 cut(s)	111, 1731
BspHI	TCATGA	1 cut(s)	1897
BspLI	GGNNCC	6 cut(s)	290, 406, 446, 906, 960, 1890
BspMI	ACCTGC	1 cut(s)	148
BspOI	GCTAGC	1 cut(s)	1449
BspPI	GGATC	3 cut(s)	1032, 1499, 1843
BspT104I	TTCGAA	1 cut(s)	1001
BspT107I	GGYRCC	1 cut(s)	958
BspTNI	GGTCTC	1 cut(s)	1577
BsrBI	CCGCTC	1 cut(s)	1903
BsrDI	GCAATG	1 cut(s)	1514
BsrFI	RCCGGY	3 cut(s)	260, 568, 662
BsrI	ACTGG	2 cut(s)	433, 1396
BssAI	RCCGGY	3 cut(s)	260, 568, 662
BssECI	CCNNGG	5 cut(s)	468, 601, 839, 1587, 1877
BssMI	GATC	8 cut(s)	558, 1024, 1504, 1732, 1786, 1848, 1894, 1961
BssT1I	CCWWGG	3 cut(s)	601, 1587, 1877
Bst2UI	CCWGG	3 cut(s)	68, 415, 494
Bst4CI	ACNGT	3 cut(s)	634, 977, 1674
Bst6I	CTCTTC	4 cut(s)	44, 124, 232, 1032
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	319
BstBI	TTCGAA	1 cut(s)	1001
BstC8I	GCNNGC	7 cut(s)	19, 109, 664, 747, 1140, 1447, 1482
BstDSI	CCRYGG	2 cut(s)	601, 1587
BstF5I	GGATG	6 cut(s)	236, 645, 721, 1156, 1231, 1803
BstFNI	CGCG	2 cut(s)	111, 1731
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	4 cut(s)	75, 113, 306, 314
BstKTI	GATC	8 cut(s)	561, 1027, 1507, 1735, 1789, 1851, 1897, 1964
BstMAI	GTCTC	2 cut(s)	481, 1577
BstMBI	GATC	8 cut(s)	558, 1024, 1504, 1732, 1786, 1848, 1894, 1961
BstMCI	CGRYCG	1 cut(s)	619
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 140, 794
BstNI	CCWGG	3 cut(s)	68, 415, 494
BstNSI	RCATGY	1 cut(s)	1843
BstSCI	CCNGG	5 cut(s)	66, 413, 492, 613, 1116
BstSLI	GKGCMC	1 cut(s)	329
BstUI	CGCG	2 cut(s)	111, 1731
BstV1I	GCAGC	5 cut(s)	293, 296, 962, 1666, 1668
BstV2I	GAAGAC	2 cut(s)	431, 1938
BstX2I	RGATCY	1 cut(s)	1504
BstYI	RGATCY	1 cut(s)	1504
BstZI	CGGCCG	1 cut(s)	616
Bsu36I	CCTNAGG	1 cut(s)	942
BsuI	GTATCC	1 cut(s)	801
BsuRI	GGCC	8 cut(s)	581, 613, 618, 838, 1063, 1126, 1216, 1706
BtgI	CCRYGG	2 cut(s)	601, 1587
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	6 cut(s)	236, 645, 721, 1156, 1231, 1803
BtsI	GCAGTG	4 cut(s)	44, 756, 823, 1236
BtsIMutI	CAGTG	8 cut(s)	44, 630, 700, 756, 823, 1236, 1389, 1745
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	7 cut(s)	19, 109, 664, 747, 1140, 1447, 1482
CaiI	CAGNNNCTG	2 cut(s)	1391, 1442
CciI	TCATGA	1 cut(s)	1897
CfoI	GCGC	4 cut(s)	75, 113, 306, 314
Cfr10I	RCCGGY	3 cut(s)	260, 568, 662
Cfr13I	GGNCC	8 cut(s)	289, 580, 612, 642, 904, 1214, 1339, 1704
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	959, 1381, 1600, 2100
CviAII	CATG	7 cut(s)	602, 1588, 1840, 1898, 2078, 2096, 2103
CviQI	GTAC	4 cut(s)	959, 1381, 1600, 2100
DpnI	GATC	8 cut(s)	560, 1026, 1506, 1734, 1788, 1850, 1896, 1963
DpnII	GATC	8 cut(s)	558, 1024, 1504, 1732, 1786, 1848, 1894, 1961
DraIII	CACNNNGTG	1 cut(s)	70
DrdI	GACNNNNNNGTC	1 cut(s)	287
DriI	GACNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	3 cut(s)	616, 836, 1124
EagI	CGGCCG	1 cut(s)	616
Eam1104I	CTCTTC	4 cut(s)	44, 124, 232, 1032
Eam1105I	GACNNNNNGTC	1 cut(s)	56
EarI	CTCTTC	4 cut(s)	44, 124, 232, 1032
EclXI	CGGCCG	1 cut(s)	616
Eco130I	CCWWGG	3 cut(s)	601, 1587, 1877
Eco24I	GRGCYC	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	1577
Eco32I	GATATC	2 cut(s)	691, 2004
Eco47I	GGWCC	4 cut(s)	289, 642, 904, 1339
Eco47III	AGCGCT	1 cut(s)	305
Eco52I	CGGCCG	1 cut(s)	616
Eco72I	CACGTG	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	942
Eco88I	CYCGRG	3 cut(s)	503, 1508, 1540
EcoO109I	RGGNCCY	2 cut(s)	289, 1214
EcoRII	CCWGG	3 cut(s)	66, 413, 492
EcoRV	GATATC	2 cut(s)	691, 2004
EcoT14I	CCWWGG	3 cut(s)	601, 1587, 1877
EcoT22I	ATGCAT	1 cut(s)	2097
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	3 cut(s)	601, 1587, 1877
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	7 cut(s)	605, 1591, 1843, 1901, 2081, 2099, 2106
FaqI	GGGAC	2 cut(s)	1438, 1815
FatI	CATG	7 cut(s)	601, 1587, 1839, 1897, 2077, 2095, 2102
FauI	CCCGC	2 cut(s)	347, 1736
FbaI	TGATCA	1 cut(s)	558
Fnu4HI	GCNGC	7 cut(s)	307, 310, 951, 1478, 1657, 1680, 1904
FokI	GGATG	6 cut(s)	223, 632, 728, 1163, 1238, 1810
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	7 cut(s)	307, 310, 951, 1478, 1657, 1680, 1904
FspAI	RTGCGCAY	1 cut(s)	74
FspBI	CTAG	4 cut(s)	1218, 1320, 1446, 1878
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	4 cut(s)	74, 112, 305, 313
GluI	GCNGC	7 cut(s)	307, 310, 951, 1478, 1657, 1680, 1904
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	307
HaeIII	GGCC	8 cut(s)	581, 613, 618, 838, 1063, 1126, 1216, 1706
HhaI	GCGC	4 cut(s)	75, 113, 306, 314
Hin1II	CATG	7 cut(s)	605, 1591, 1843, 1901, 2081, 2099, 2106
Hin6I	GCGC	4 cut(s)	73, 111, 304, 312
HinP1I	GCGC	4 cut(s)	73, 111, 304, 312
HinfI	GANTC	9 cut(s)	506, 585, 802, 988, 1076, 1272, 1327, 1543, 1651
HphI	GGTGA	6 cut(s)	4, 121, 250, 790, 836, 1508
Hpy166II	GTNNAC	5 cut(s)	12, 352, 1383, 1670, 1745
Hpy188III	TCNNGA	8 cut(s)	527, 649, 727, 1198, 1508, 1892, 1898, 1994
Hpy8I	GTNNAC	5 cut(s)	12, 352, 1383, 1670, 1745
Hpy99I	CGWCG	3 cut(s)	62, 398, 515
HpyAV	CCTTC	6 cut(s)	105, 232, 256, 850, 883, 1814
HpyCH4III	ACNGT	3 cut(s)	634, 977, 1674
HpyCH4IV	ACGT	3 cut(s)	318, 329, 360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 140, 794
HpySE526I	ACGT	3 cut(s)	318, 329, 360
Hsp92II	CATG	7 cut(s)	605, 1591, 1843, 1901, 2081, 2099, 2106
HspAI	GCGC	4 cut(s)	73, 111, 304, 312
Kpn2I	TCCGGA	1 cut(s)	648
KpnI	GGTACC	1 cut(s)	962
KroI	GCCGGC	1 cut(s)	662
KroNI	GCCGGC	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	8 cut(s)	558, 1024, 1504, 1732, 1786, 1848, 1894, 1961
LmnI	GCTCC	6 cut(s)	26, 206, 444, 495, 651, 742
Lsp1109I	GCAGC	5 cut(s)	293, 296, 962, 1666, 1668
LweI	GCATC	2 cut(s)	1216, 1801
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	4 cut(s)	1218, 1320, 1446, 1878
MaeII	ACGT	3 cut(s)	318, 329, 360
MaeIII	GTNAC	3 cut(s)	319, 1438, 1760
MalI	GATC	8 cut(s)	560, 1026, 1506, 1734, 1788, 1850, 1896, 1963
MbiI	CCGCTC	1 cut(s)	1903
MboI	GATC	8 cut(s)	558, 1024, 1504, 1732, 1786, 1848, 1894, 1961
MfeI	CAATTG	2 cut(s)	189, 1815
MflI	RGATCY	1 cut(s)	1504
MhlI	GDGCHC	4 cut(s)	66, 329, 449, 799
MluCI	AATT	9 cut(s)	189, 275, 931, 1090, 1347, 1469, 1815, 1882, 1965
MlyI	GAGTC	3 cut(s)	515, 997, 1552
MmeI	TCCRAC	4 cut(s)	534, 1002, 1266, 1281
Mph1103I	ATGCAT	1 cut(s)	2097
MroI	TCCGGA	1 cut(s)	648
MroNI	GCCGGC	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	1824
MseI	TTAA	6 cut(s)	399, 1098, 1491, 1793, 1968, 1982
MslI	CAYNNNNRTG	1 cut(s)	1529
MspR9I	CCNGG	5 cut(s)	68, 415, 494, 615, 1118
MunI	CAATTG	2 cut(s)	189, 1815
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	3 cut(s)	68, 415, 494
MvnI	CGCG	2 cut(s)	111, 1731
MwoI	GCNNNNNNNGC	3 cut(s)	70, 140, 794
NaeI	GCCGGC	1 cut(s)	664
NciI	CCSGG	2 cut(s)	615, 1118
NcoI	CCATGG	2 cut(s)	601, 1587
NdeII	GATC	8 cut(s)	558, 1024, 1504, 1732, 1786, 1848, 1894, 1961
NgoMIV	GCCGGC	1 cut(s)	662
NheI	GCTAGC	1 cut(s)	1445
NlaIII	CATG	7 cut(s)	605, 1591, 1843, 1901, 2081, 2099, 2106
NlaIV	GGNNCC	6 cut(s)	290, 406, 446, 906, 960, 1890
NmeAIII	GCCGAG	1 cut(s)	864
NmuCI	GTSAC	1 cut(s)	319
NsbI	TGCGCA	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	2097
NspI	RCATGY	1 cut(s)	1843
NspV	TTCGAA	1 cut(s)	1001
PaeR7I	CTCGAG	2 cut(s)	503, 1540
PagI	TCATGA	1 cut(s)	1897
PaqCI	CACCTGC	1 cut(s)	148
PciI	ACATGT	1 cut(s)	1839
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 510
PctI	GAATGC	1 cut(s)	628
PdiI	GCCGGC	1 cut(s)	664
PdmI	GAANNNNTTC	1 cut(s)	1824
PfeI	GAWTC	6 cut(s)	585, 802, 1076, 1272, 1327, 1651
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	7 cut(s)	308, 311, 952, 1479, 1658, 1681, 1905
PleI	GAGTC	3 cut(s)	514, 996, 1551
PmaCI	CACGTG	1 cut(s)	319
PmlI	CACGTG	1 cut(s)	319
PpsI	GAGTC	3 cut(s)	514, 996, 1551
Ppu21I	YACGTR	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	289
PscI	ACATGT	1 cut(s)	1839
PshBI	ATTAAT	1 cut(s)	1098
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	3 cut(s)	66, 413, 492
PspCI	CACGTG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	3 cut(s)	66, 413, 492
PspN4I	GGNNCC	6 cut(s)	290, 406, 446, 906, 960, 1890
PspPI	GGNCC	8 cut(s)	289, 580, 612, 642, 904, 1214, 1339, 1704
PspPPI	RGGWCCY	1 cut(s)	289
PspXI	VCTCGAGB	2 cut(s)	503, 1540
PstNI	CAGNNNCTG	2 cut(s)	1391, 1442
PsuI	RGATCY	1 cut(s)	1504
RsaI	GTAC	4 cut(s)	960, 1382, 1601, 2101
RsaNI	GTAC	4 cut(s)	959, 1381, 1600, 2100
RseI	CAYNNNNRTG	1 cut(s)	1529
SaqAI	TTAA	6 cut(s)	399, 1098, 1491, 1793, 1968, 1982
SatI	GCNGC	7 cut(s)	307, 310, 951, 1478, 1657, 1680, 1904
Sau3AI	GATC	8 cut(s)	558, 1024, 1504, 1732, 1786, 1848, 1894, 1961
Sau96I	GGNCC	8 cut(s)	289, 580, 612, 642, 904, 1214, 1339, 1704
SchI	GAGTC	3 cut(s)	515, 997, 1552
ScrFI	CCNGG	5 cut(s)	68, 415, 494, 615, 1118
SduI	GDGCHC	4 cut(s)	66, 329, 449, 799
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	2 cut(s)	1216, 1801
Sfr274I	CTCGAG	2 cut(s)	503, 1540
SfuI	TTCGAA	1 cut(s)	1001
SinI	GGWCC	4 cut(s)	289, 642, 904, 1339
SlaI	CTCGAG	2 cut(s)	503, 1540
SmiMI	CAYNNNNRTG	1 cut(s)	1529
SmlI	CTYRAG	3 cut(s)	503, 1540, 1992
SmoI	CTYRAG	3 cut(s)	503, 1540, 1992
Sse9I	AATT	9 cut(s)	189, 275, 931, 1090, 1347, 1469, 1815, 1882, 1965
SsiI	CCGC	7 cut(s)	15, 132, 340, 484, 1477, 1729, 1903
SspI	AATATT	2 cut(s)	984, 1781
SspMI	CTAG	4 cut(s)	1218, 1320, 1446, 1878
StyD4I	CCNGG	5 cut(s)	66, 413, 492, 613, 1116
StyI	CCWWGG	3 cut(s)	601, 1587, 1877
TaaI	ACNGT	3 cut(s)	634, 977, 1674
TaiI	ACGT	3 cut(s)	321, 332, 363
TaqI	TCGA	8 cut(s)	60, 279, 504, 576, 1001, 1094, 1210, 1541
TasI	AATT	9 cut(s)	189, 275, 931, 1090, 1347, 1469, 1815, 1882, 1965
TauI	GCSGC	2 cut(s)	1480, 1906
TfiI	GAWTC	6 cut(s)	585, 802, 1076, 1272, 1327, 1651
Tru1I	TTAA	6 cut(s)	399, 1098, 1491, 1793, 1968, 1982
Tru9I	TTAA	6 cut(s)	399, 1098, 1491, 1793, 1968, 1982
TscAI	CASTG	8 cut(s)	51, 637, 700, 756, 823, 1236, 1396, 1752
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	5 cut(s)	306, 309, 950, 1656, 1679
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	3 cut(s)	427, 843, 1583
TspGWI	ACGGA	1 cut(s)	2020
TspRI	CASTG	8 cut(s)	51, 637, 700, 756, 823, 1236, 1396, 1752
Van91I	CCANNNNNTGG	1 cut(s)	210
VpaK11BI	GGWCC	4 cut(s)	289, 642, 904, 1339
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	2 cut(s)	275, 1090
XceI	RCATGY	1 cut(s)	1843
XhoI	CTCGAG	2 cut(s)	503, 1540
XmaJI	CCTAGG	1 cut(s)	1877
XmnI	GAANNNNTTC	1 cut(s)	1824
XspI	CTAG	4 cut(s)	1218, 1320, 1446, 1878
Zsp2I	ATGCAT	1 cut(s)	2097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.