Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010836

Physical Location & Seq

Genomic Coordinates Reverse (-)

35704947 .. 35705693

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1262500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCCCGCAGGGTTATACACCCCACGCTTAGTTACACGGCCACTGGAGGCAATGTTGTGAGCCAAAAAGGTGCAGGGACTCTGCTTTCGGTTACTGCTAGCTTACAACAATGTATTCGCCAATTCAGGCGGCTTGAGTTTGTTAAGGGCGATAAAGATCCTGAGCCACTGCCCTGCACTCCAATGCTTTACTCTGGTCAAGCTCATACCAATTCCCAGAGGAATAAATTGTTAGAGACCATGGCTGATTGGTACAAGTATGCTGATAATCGCAAGAAAGTCGTTGGGTTTTGCGCCTATGTTATACGTAGCTCTTTGGCCAAACTGTACGCTGCAAGGTATAGACTAAAATCACGAGCCAAGGTGTATGCAATAGCTTCACGCGATCTCAGTCGTCCACTGAGGGAGAGCAGCAACAATTCTGCGCCTGAATATTCTGATCTATTGAGGGTGGGACTTGTTGATGCAATTGAAGGTGTTCGGTTCTCACACATGTCTCTGATTCCATCTTGTGATTACTCCCCATTTCCTAGAAATTGGGTCCCCGATCATGAGCGGCTCTTGCGTGACTACATCAGACTTGAAGACCCAAAATTCTTTTGTGCCTTGCATAGATCAATTAAACGAGATGGTTTAATTTTGCCTCCAGATGAGATATCTGAAATTCTGTGGGATTTCAAAACCCTTGGGGTTTTGAACTATAAGCTTAGTGAAGAAAGAGAAACAAGAAAAGATTGTGCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000374 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006521 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009889 GO:0009894 GO:0009987 GO:0010228 GO:0010467 GO:0010556 GO:0010565 GO:0010675 GO:0010896 GO:0010962 GO:0016043 GO:0016070 GO:0016071 GO:0019216 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031329 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033238 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050994 GO:0051171 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1901360 GO:2000112 GO:2001006

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

249

Amino Acids

28.4

Weight (kDa)

9.42

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30010
fragaria_vesca	FvH4_3g05620 FvH4_3g05620 FvH4_3g05620
malus_domestica	MD05G1284200.v1.1 MD10G1262500.v1.1 MD10G1262600.v1.1
pyrus_communis	pycom05g26330 pycom10g21870
rosa_chinensis	RchiOBHm_Chr5g0014061
rosa_laevigata	RLG00000000981 RLG00000032078
rosa_roxburghii	Rroxscaffold_1G00062550
rosa_rugosa	Rorug05G0015200
rosa_samantha	Rh5AG109300 Rh5BG106000 Rh5BG249100 Rh5CG117800 Rh5DG104800
rosa_wichuraiana	Rw2G053790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	556
AccII	CGCG	1 cut(s)	384
AciI	CCGC	3 cut(s)	7, 130, 556
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	2 cut(s)	39, 318
AcsI	RAATTY	2 cut(s)	593, 663
AfaI	GTAC	2 cut(s)	254, 329
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	4 cut(s)	473, 584, 679, 697
AluBI	AGCT	5 cut(s)	102, 203, 312, 377, 706
AluI	AGCT	5 cut(s)	102, 203, 312, 377, 706
Alw26I	GTCTC	2 cut(s)	230, 501
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	2 cut(s)	39, 318
ApeKI	GCWGC	2 cut(s)	332, 411
ApoI	RAATTY	2 cut(s)	593, 663
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	2 cut(s)	296, 427
AspS9I	GGNCC	1 cut(s)	541
AsuNHI	GCTAGC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	541
BalI	TGGCCA	1 cut(s)	320
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	319, 423
BccI	CCATC	2 cut(s)	514, 623
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BcoDI	GTCTC	2 cut(s)	230, 501
BfaI	CTAG	2 cut(s)	99, 531
BisI	GCNGC	4 cut(s)	131, 333, 412, 557
BlsI	GCNGC	4 cut(s)	132, 334, 413, 558
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	2 cut(s)	542, 543
BmsI	GCATC	1 cut(s)	454
BmtI	GCTAGC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	2 cut(s)	66, 630
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	240, 360, 685
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	240, 360, 685
BseJI	GATNNNNATC	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	3 cut(s)	153, 392, 403
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	319, 423
BsgI	GTGCAG	2 cut(s)	93, 160
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	41, 320
BslFI	GGGAC	3 cut(s)	91, 468, 527
BsmAI	GTCTC	2 cut(s)	230, 501
BsmFI	GGGAC	3 cut(s)	91, 468, 527
BsnI	GGCC	2 cut(s)	41, 320
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	5 cut(s)	157, 385, 439, 547, 614
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	3 cut(s)	7, 130, 556
BspANI	GGCC	2 cut(s)	41, 320
BspCNI	CTCAG	3 cut(s)	154, 393, 402
BspFNI	CGCG	1 cut(s)	384
BspHI	TCATGA	2 cut(s)	550, 743
BspLI	GGNNCC	2 cut(s)	542, 543
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	240, 360, 685
BssMI	GATC	5 cut(s)	157, 385, 439, 547, 614
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	3 cut(s)	240, 360, 685
Bst2BI	CACGAG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	5 cut(s)	29, 162, 389, 401, 707
BstDSI	CCRYGG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	296, 427
BstKTI	GATC	5 cut(s)	160, 388, 442, 550, 617
BstMAI	GTCTC	2 cut(s)	230, 501
BstMBI	GATC	5 cut(s)	157, 385, 439, 547, 614
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNSI	RCATGY	1 cut(s)	496
BstSNI	TACGTA	1 cut(s)	308
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	319, 423
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	41, 320
BtgI	CCRYGG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	3 cut(s)	42, 167, 398
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	2 cut(s)	550, 743
CfoI	GCGC	2 cut(s)	296, 427
Cfr13I	GGNCC	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	253, 328
CviAII	CATG	4 cut(s)	241, 493, 551, 744
CviQI	GTAC	2 cut(s)	253, 328
DdeI	CTNAG	5 cut(s)	29, 162, 389, 401, 707
DpnI	GATC	5 cut(s)	159, 387, 441, 549, 616
DpnII	GATC	5 cut(s)	157, 385, 439, 547, 614
EaeI	YGGCCR	2 cut(s)	39, 318
Eco105I	TACGTA	1 cut(s)	308
Eco130I	CCWWGG	3 cut(s)	240, 360, 685
Eco31I	GGTCTC	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRV	GATATC	1 cut(s)	657
EcoT14I	CCWWGG	3 cut(s)	240, 360, 685
ErhI	CCWWGG	3 cut(s)	240, 360, 685
FaeI	CATG	4 cut(s)	244, 496, 554, 747
FaqI	GGGAC	3 cut(s)	91, 468, 527
FatI	CATG	4 cut(s)	240, 492, 550, 743
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	4 cut(s)	131, 333, 412, 557
Fsp4HI	GCNGC	4 cut(s)	131, 333, 412, 557
FspBI	CTAG	2 cut(s)	99, 531
GlaI	GCGC	2 cut(s)	295, 426
GluI	GCNGC	4 cut(s)	131, 333, 412, 557
GsuI	CTGGAG	2 cut(s)	66, 630
HaeIII	GGCC	2 cut(s)	41, 320
HhaI	GCGC	2 cut(s)	296, 427
Hin1II	CATG	4 cut(s)	244, 496, 554, 747
Hin6I	GCGC	2 cut(s)	294, 425
HinP1I	GCGC	2 cut(s)	294, 425
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	2 cut(s)	79, 502
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	4 cut(s)	439, 501, 578, 661
Hpy188III	TCNNGA	5 cut(s)	161, 354, 551, 647, 744
Hpy8I	GTNNAC	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	6 cut(s)	74, 177, 335, 371, 467, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	5 cut(s)	29, 162, 389, 401, 707
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	4 cut(s)	244, 496, 554, 747
HspAI	GCGC	2 cut(s)	294, 425
KflI	GGGWCCC	1 cut(s)	541
Kzo9I	GATC	5 cut(s)	157, 385, 439, 547, 614
LpnPI	CCDG	9 cut(s)	30, 60, 112, 174, 180, 187, 230, 441, 660
Lsp1109I	GCAGC	2 cut(s)	319, 423
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	2 cut(s)	99, 531
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	3 cut(s)	32, 91, 566
MalI	GATC	5 cut(s)	159, 387, 441, 549, 616
MbiI	CCGCTC	1 cut(s)	556
MboI	GATC	5 cut(s)	157, 385, 439, 547, 614
MboII	GAAGA	2 cut(s)	596, 725
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	320
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	5 cut(s)	41, 213, 396, 441, 654
Mox20I	TGGCCA	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	3 cut(s)	144, 621, 635
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	320
MunI	CAATTG	1 cut(s)	468
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	5 cut(s)	157, 385, 439, 547, 614
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	4 cut(s)	244, 496, 554, 747
NlaIV	GGNNCC	2 cut(s)	542, 543
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	2 cut(s)	550, 743
PciI	ACATGT	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	502
PkrI	GCNGC	4 cut(s)	132, 334, 413, 558
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Ppu21I	YACGTR	1 cut(s)	308
PpuMI	RGGWCCY	1 cut(s)	541
PscI	ACATGT	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	541
PspN4I	GGNNCC	2 cut(s)	542, 543
PspPI	GGNCC	1 cut(s)	541
PspPPI	RGGWCCY	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	254, 329
RsaNI	GTAC	2 cut(s)	253, 328
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	144, 621, 635
SatI	GCNGC	4 cut(s)	131, 333, 412, 557
Sau3AI	GATC	5 cut(s)	157, 385, 439, 547, 614
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	1 cut(s)	73
SfaNI	GCATC	1 cut(s)	454
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SnaBI	TACGTA	1 cut(s)	308
SsiI	CCGC	3 cut(s)	7, 130, 556
SspI	AATATT	1 cut(s)	434
SspMI	CTAG	2 cut(s)	99, 531
StyI	CCWWGG	3 cut(s)	240, 360, 685
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	310
TauI	GCSGC	2 cut(s)	133, 559
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	3 cut(s)	144, 621, 635
Tru9I	TTAA	3 cut(s)	144, 621, 635
TscAI	CASTG	3 cut(s)	49, 174, 405
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	2 cut(s)	332, 411
Tsp45I	GTSAC	1 cut(s)	566
TspRI	CASTG	3 cut(s)	49, 174, 405
VpaK11BI	GGWCC	1 cut(s)	541
XapI	RAATTY	2 cut(s)	593, 663
XceI	RCATGY	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	2 cut(s)	99, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.