Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010836

Physical Location & Seq

Genomic Coordinates Forward (+)

30479596 .. 30480290

Gene Structure 695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG249100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCCTCATCTCCAGATACCTGTCCGGGTGCATAACCCAGACCTCCTCTCCCTCCGAAACGCCGTCGTTAAAGGCAACTATGCCTGGAACAAGAAGACCCACCAGTTCATTCGGAGTCCCAACGACAGGCCCAGCATCGAGGTCATCTCCAAACGGAAGCTCCAGGCTATGCTCGACTCCGACGAGCCGTGGTTTCAGGATAGGATTTTGCAGGAGGTGTTGCTGATGATCATTGAGCCGGTTTTCGAGGCCCGATTCTCGCCGAAAGGGGGTTTCGGCCAGGCCGGAATGCCCACACCGTTATTCGGACCATCCGCAGCAACTTCGCCGGGTTGCTTGGAGCAGGCAGTGAGGGATAGGAAGATATTGGGTTTGGTGAAATCTGCACTCAGAGCACCGAATCGGATACAGAGCAGTGATGGTGATGAACAATGGCCAAGGAAGAAGAAGGCGGTTTCGAAGAAGAAGAAGATTTTGAATGGGAAGGAAGCGAAACCGGACCCGTATTGGCTCAGAACGTTTTTCAATTTTGCAACTGAGCTATGGAATAGAGAAGAAAATCTTAGTGAAGCTGTTTTTGGGTTTTTGATCACTGCCTTGGAGCTCCCAGGAGCATCTGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000374 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006139 GO:0006396 GO:0006397 GO:0006521 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009889 GO:0009894 GO:0009987 GO:0010228 GO:0010467 GO:0010556 GO:0010565 GO:0010675 GO:0010896 GO:0010962 GO:0016043 GO:0016070 GO:0016071 GO:0019216 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031329 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033238 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050994 GO:0051171 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090304 GO:0090351 GO:0090615 GO:0140053 GO:1901360 GO:2000112 GO:2001006

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

208

Amino Acids

23.52

Weight (kDa)

9.77

Isoelectric Point (pI)

58.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30010
fragaria_vesca	FvH4_3g05620 FvH4_3g05620 FvH4_3g05620
malus_domestica	MD05G1284200.v1.1 MD10G1262500.v1.1 MD10G1262600.v1.1
pyrus_communis	pycom05g26330 pycom10g21870
rosa_chinensis	RchiOBHm_Chr5g0014061
rosa_laevigata	RLG00000000981 RLG00000032078
rosa_roxburghii	Rroxscaffold_1G00062550
rosa_rugosa	Rorug05G0015200
rosa_samantha	Rh5AG109300 Rh5BG106000 Rh5BG249100 Rh5CG117800 Rh5DG104800
rosa_wichuraiana	Rw2G053790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	315, 452
AclI	AACGTT	1 cut(s)	518
AcoI	YGGCCR	2 cut(s)	277, 434
AfiI	CCNNNNNNNGG	3 cut(s)	126, 269, 305
AgsI	TTSAA	2 cut(s)	478, 526
AjnI	CCWGG	4 cut(s)	83, 162, 279, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	561, 593
AluBI	AGCT	4 cut(s)	160, 541, 572, 604
AluI	AGCT	4 cut(s)	160, 541, 572, 604
Alw21I	GWGCWC	2 cut(s)	397, 606
AoxI	GGCC	5 cut(s)	128, 249, 277, 282, 434
ApeKI	GCWGC	1 cut(s)	317
AspS9I	GGNCC	4 cut(s)	129, 250, 308, 499
AsuC2I	CCSGG	2 cut(s)	26, 330
AsuHPI	GGTGA	2 cut(s)	388, 434
AsuII	TTCGAA	1 cut(s)	458
AvaII	GGWCC	2 cut(s)	308, 499
BalI	TGGCCA	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	2 cut(s)	397, 606
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	2 cut(s)	319, 413
BceAI	ACGGC	2 cut(s)	47, 172
BcgI	CGANNNNNNTGC	2 cut(s)	306, 340
BciT130I	CCWGG	4 cut(s)	85, 164, 281, 609
BciVI	GTATCC	1 cut(s)	399
BclI	TGATCA	2 cut(s)	228, 588
BcnI	CCSGG	2 cut(s)	26, 330
BfuI	GTATCC	1 cut(s)	399
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	6 cut(s)	26, 85, 164, 281, 330, 609
Bme18I	GGWCC	2 cut(s)	308, 499
BmgT120I	GGNCC	4 cut(s)	129, 250, 308, 499
BmiI	GGNNCC	1 cut(s)	501
BmrFI	CCNGG	6 cut(s)	26, 85, 164, 281, 330, 609
BmsI	GCATC	2 cut(s)	144, 623
BpiI	GAAGAC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BpmI	CTGGAG	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	458
BpuMI	CCSGG	2 cut(s)	26, 330
BsaJI	CCNNGG	4 cut(s)	188, 437, 597, 607
BsaWI	WCCGGW	1 cut(s)	496
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 144, 174
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 269, 305
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	4 cut(s)	85, 164, 281, 609
BseDI	CCNNGG	4 cut(s)	188, 437, 597, 607
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	3 cut(s)	126, 269, 305
BseMII	CTCAG	3 cut(s)	403, 526, 528
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	5 cut(s)	130, 251, 279, 284, 436
BsiHKAI	GWGCWC	2 cut(s)	397, 606
BsiSI	CCGG	5 cut(s)	25, 239, 285, 329, 497
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	126, 269, 305
BsmFI	GGGAC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	5 cut(s)	130, 251, 279, 284, 436
Bsp119I	TTCGAA	1 cut(s)	458
Bsp1286I	GDGCHC	2 cut(s)	397, 606
Bsp143I	GATC	2 cut(s)	228, 588
BspACI	CCGC	2 cut(s)	315, 452
BspANI	GGCC	5 cut(s)	130, 251, 279, 284, 436
BspCNI	CTCAG	3 cut(s)	402, 525, 529
BspLI	GGNNCC	1 cut(s)	501
BspT104I	TTCGAA	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	188, 437, 597, 607
BssMI	GATC	2 cut(s)	228, 588
BssT1I	CCWWGG	2 cut(s)	437, 597
Bst2UI	CCWGG	4 cut(s)	85, 164, 281, 609
Bst4CI	ACNGT	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	4 cut(s)	389, 512, 537, 563
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	2 cut(s)	231, 591
BstMBI	GATC	2 cut(s)	228, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	4 cut(s)	85, 164, 281, 609
BstSCI	CCNGG	6 cut(s)	24, 83, 162, 279, 328, 607
BstV1I	GCAGC	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	5 cut(s)	130, 251, 279, 284, 436
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	311
BtsI	GCAGTG	3 cut(s)	354, 421, 591
BtsIMutI	CAGTG	3 cut(s)	354, 421, 591
Cac8I	GCNNGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	4 cut(s)	129, 250, 308, 499
DdeI	CTNAG	4 cut(s)	389, 512, 537, 563
DpnI	GATC	2 cut(s)	230, 590
DpnII	GATC	2 cut(s)	228, 588
EaeI	YGGCCR	2 cut(s)	277, 434
Ecl136II	GAGCTC	1 cut(s)	604
Eco130I	CCWWGG	2 cut(s)	437, 597
Eco24I	GRGCYC	1 cut(s)	606
Eco47I	GGWCC	2 cut(s)	308, 499
Eco53kI	GAGCTC	1 cut(s)	604
EcoICRI	GAGCTC	1 cut(s)	604
EcoRII	CCWGG	4 cut(s)	83, 162, 279, 607
EcoT14I	CCWWGG	2 cut(s)	437, 597
EcoT38I	GRGCYC	1 cut(s)	606
ErhI	CCWWGG	2 cut(s)	437, 597
FaiI	YATR	4 cut(s)	33, 81, 170, 544
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	1 cut(s)	102
FbaI	TGATCA	2 cut(s)	228, 588
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	1 cut(s)	298
FriOI	GRGCYC	1 cut(s)	606
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	5 cut(s)	130, 251, 279, 284, 436
HapII	CCGG	5 cut(s)	25, 239, 285, 329, 497
HinfI	GANTC	4 cut(s)	115, 176, 255, 400
HpaII	CCGG	5 cut(s)	25, 239, 285, 329, 497
HphI	GGTGA	2 cut(s)	388, 434
Hpy188I	TCNGA	7 cut(s)	56, 114, 181, 308, 392, 405, 515
Hpy188III	TCNNGA	2 cut(s)	13, 197
Hpy99I	CGWCG	2 cut(s)	68, 185
HpyAV	CCTTC	2 cut(s)	442, 478
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	4 cut(s)	31, 211, 386, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	4 cut(s)	389, 512, 537, 563
HpySE526I	ACGT	1 cut(s)	518
Ksp22I	TGATCA	2 cut(s)	228, 588
Kzo9I	GATC	2 cut(s)	228, 588
LmnI	GCTCC	5 cut(s)	165, 340, 601, 609, 611
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	2 cut(s)	144, 623
MaeII	ACGT	1 cut(s)	518
MalI	GATC	2 cut(s)	230, 590
MboI	GATC	2 cut(s)	228, 588
MboII	GAAGA	9 cut(s)	106, 373, 454, 457, 472, 475, 478, 481, 566
MhlI	GDGCHC	2 cut(s)	397, 606
MlsI	TGGCCA	1 cut(s)	436
MluCI	AATT	1 cut(s)	526
MluNI	TGGCCA	1 cut(s)	436
MlyI	GAGTC	2 cut(s)	124, 170
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	8 cut(s)	15, 53, 56, 62, 133, 208, 241, 345
Mox20I	TGGCCA	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	436
MseI	TTAA	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	436
MspI	CCGG	5 cut(s)	25, 239, 285, 329, 497
MspR9I	CCNGG	6 cut(s)	26, 85, 164, 281, 330, 609
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	4 cut(s)	85, 164, 281, 609
MwoI	GCNNNNNNNGC	1 cut(s)	392
NciI	CCSGG	2 cut(s)	26, 330
NdeII	GATC	2 cut(s)	228, 588
NlaIV	GGNNCC	1 cut(s)	501
NspV	TTCGAA	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	255, 400
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	2 cut(s)	123, 170
PpsI	GAGTC	2 cut(s)	123, 170
Psp124BI	GAGCTC	1 cut(s)	606
Psp1406I	AACGTT	1 cut(s)	518
Psp6I	CCWGG	4 cut(s)	83, 162, 279, 607
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	4 cut(s)	83, 162, 279, 607
PspN4I	GGNNCC	1 cut(s)	501
PspPI	GGNCC	4 cut(s)	129, 250, 308, 499
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	2 cut(s)	228, 588
Sau96I	GGNCC	4 cut(s)	129, 250, 308, 499
SchI	GAGTC	2 cut(s)	124, 170
ScrFI	CCNGG	6 cut(s)	26, 85, 164, 281, 330, 609
SduI	GDGCHC	2 cut(s)	397, 606
SetI	ASST	9 cut(s)	22, 45, 144, 162, 219, 521, 543, 574, 606
SfaNI	GCATC	2 cut(s)	144, 623
SfuI	TTCGAA	1 cut(s)	458
SinI	GGWCC	2 cut(s)	308, 499
Sse9I	AATT	1 cut(s)	526
SsiI	CCGC	2 cut(s)	315, 452
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	6 cut(s)	24, 83, 162, 279, 328, 607
StyI	CCWWGG	2 cut(s)	437, 597
TaaI	ACNGT	1 cut(s)	300
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	4 cut(s)	138, 174, 246, 458
TasI	AATT	1 cut(s)	526
TfiI	GAWTC	2 cut(s)	255, 400
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	3 cut(s)	354, 421, 598
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	97, 441
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	3 cut(s)	354, 421, 598
VpaK11BI	GGWCC	2 cut(s)	308, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.