AT1G30510

ferredoxin--NADP reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006772
Physical Location & Seq
Reverse (-)
10806930 .. 10809188
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30510.2

Sequence Viewer

Length: 1146 bp
ATGTCTCACTCTGCTGTTTCTCAGGCTGGTGCTGTCTCAGTTTCAATTGAAAACCAACGTTCTCTTAGAAGATCCGTCTTCAAGAACAATAGCATAAGCTTCAACAGCAAGTCATGGTCATCTTCTTTAGCATTGAACCAGAAGACAACAAGCATAAGAGATGGGAAACGGTACCCGAGCACGACAATATGTATGTCGGTTCAACAAACAAGTAGTTCCAAGGTTACTGTCTCTCCTATAGAGTTGGAAGACCCTAAGGATCCTCCTTTGAACTTGTACAAACCCAAGGAGTCTTACACCGCTAAGATTGTCTCTGTGGAGCGAGTAGTTGGCCCGAAAGCCCCTGGAGAAACTTGTCATATCGTCATCGATCATGATGGTAACCTTCCTTACTGGGAAGGACAGAGTTACGGTGTGATTCCTCCAGGTGAGAACCCGAAGAAACCGGGAGCGCCACACAATGTGCGCCTTTACTCAATTGCATCAACAAGGTACGGAGATTTCTTTGACGGTAAAACAGCGAGTTTGTGTGTACGTAGAGCTGTTTATTACGACCCTGAGACTGGAAAAGAAGATCCTTCAAAGAACGGAGTCTGCAGCAACTTCCTATGTGATTCAAAGCCCGGTGACAAGATTCAAATCACCGGTCCATCTGGGAAGGTAATGCTATTACCCGAGAGTGATCCAAACGCGACACACATAATGATAGCCACGGGAACAGGAGTGGCTCCATACAGAGGCTACTTACGTCGAATGTTCATGGAAAACGTCCCAAACAAGACATTTAGCGGCTTAGCTTGGCTCTTCTTAGGCGTGGCCAACACCGATAGCCTTCTCTATGACGAAGAGTTTACCAAGTACCTAAAAGACCATCCAGACAACTTTAGGTTCGACAAGGCATTGAGCAGAGAGGAGAAGAACAAGAAAGGTGGAAAGATGTACGTGCAGGACAAGATTGAAGAATATAGTGATGAGATCTTCAAGCTTTTGGACAATGGAGCTCATATTTACTTCTGTGGGCTTAAAGGAATGATGCCTGGGATTCAAGATACACTTAAGAGAGTTGCAGAAGAGAGAGGTGAGAGCTGGGACTTGAAGCTTTCTCAGCTCAGGAAGAACAAGCAGTGGCACGTTGAAGTCTATTGA

Protein Analysis

381

Amino Acids

42.66

Weight (kDa)

8.77

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_1 PF00175 236 - 350 8.4e-26 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 171
AccII CGCG 1 cut(s) 692
AciI CCGC 2 cut(s) 300, 789
AclI AACGTT 1 cut(s) 58
AclWI GGATC 5 cut(s) 66, 254, 267, 569, 677
AcoI YGGCCR 1 cut(s) 816
AdeI CACNNNGTG 1 cut(s) 463
AfaI GTAC 6 cut(s) 173, 278, 494, 534, 860, 941
AfiI CCNNNNNNNGG 2 cut(s) 563, 737
AflII CTTAAG 1 cut(s) 1055
AgeI ACCGGT 1 cut(s) 644
AjnI CCWGG 3 cut(s) 343, 424, 1036
AluBI AGCT 8 cut(s) 99, 542, 797, 985, 1001, 1086, 1099, 1108
AluI AGCT 8 cut(s) 99, 542, 797, 985, 1001, 1086, 1099, 1108
Alw21I GWGCWC 2 cut(s) 182, 1003
Alw26I GTCTC 5 cut(s) 9, 40, 235, 316, 554
AlwI GGATC 5 cut(s) 66, 254, 267, 569, 677
Ama87I CYCGRG 2 cut(s) 175, 674
AoxI GGCC 2 cut(s) 331, 816
ApeKI GCWGC 1 cut(s) 597
ArsI GACNNNNNNTTYG 2 cut(s) 631, 663
AsiGI ACCGGT 1 cut(s) 644
Asp718I GGTACC 1 cut(s) 171
AspLEI GCGC 2 cut(s) 454, 468
AspS9I GGNCC 2 cut(s) 332, 647
AsuC2I CCSGG 2 cut(s) 447, 624
AsuHPI GGTGA 4 cut(s) 440, 634, 638, 1091
AvaI CYCGRG 2 cut(s) 175, 674
AvaII GGWCC 1 cut(s) 647
AxyI CCTNAGG 1 cut(s) 255
BalI TGGCCA 1 cut(s) 818
BamHI GGATCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 1003
BbsI GAAGAC 3 cut(s) 70, 149, 255
Bbv12I GWGCWC 2 cut(s) 182, 1003
BbvI GCAGC 1 cut(s) 609
BccI CCATC 4 cut(s) 155, 371, 658, 879
BciT130I CCWGG 3 cut(s) 345, 426, 1038
BcnI CCSGG 2 cut(s) 447, 624
BcoDI GTCTC 5 cut(s) 9, 40, 235, 316, 554
BfmI CTRYAG 2 cut(s) 237, 595
BfoI RGCGCY 1 cut(s) 455
BfrI CTTAAG 1 cut(s) 1055
BglII AGATCT 1 cut(s) 975
BisI GCNGC 2 cut(s) 598, 790
BlpI GCTNAGC 1 cut(s) 793
BlsI GCNGC 2 cut(s) 599, 791
Bme1390I CCNGG 5 cut(s) 345, 426, 447, 624, 1038
Bme18I GGWCC 1 cut(s) 647
BmeT110I CYCGRG 2 cut(s) 175, 674
BmgT120I GGNCC 2 cut(s) 332, 647
BmiI GGNNCC 3 cut(s) 173, 261, 729
BmrFI CCNGG 5 cut(s) 345, 426, 447, 624, 1038
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 2 cut(s) 491, 1023
BmuI ACTGGG 1 cut(s) 403
BpiI GAAGAC 3 cut(s) 70, 149, 255
BpmI CTGGAG 2 cut(s) 366, 408
Bpu10I CCTNAGC 1 cut(s) 1109
Bpu1102I GCTNAGC 1 cut(s) 793
BpuMI CCSGG 2 cut(s) 447, 624
Bsa29I ATCGAT 1 cut(s) 369
BsaAI YACGTR 2 cut(s) 536, 943
BsaBI GATNNNNATC 1 cut(s) 638
BsaJI CCNNGG 5 cut(s) 219, 285, 343, 711, 1037
BsaWI WCCGGW 1 cut(s) 644
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 563, 737
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 2 cut(s) 398, 568
Bse21I CCTNAGG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 638
BseBI CCWGG 3 cut(s) 345, 426, 1038
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 5 cut(s) 219, 285, 343, 711, 1037
BseGI GGATG 1 cut(s) 871
BseJI GATNNNNATC 1 cut(s) 638
BseLI CCNNNNNNNGG 2 cut(s) 563, 737
BseMII CTCAG 5 cut(s) 35, 51, 549, 1118, 1123
BseNI ACTGG 2 cut(s) 398, 568
BseRI GAGGAG 1 cut(s) 926
BseXI GCAGC 1 cut(s) 609
BseYI CCCAGC 1 cut(s) 1086
BsgI GTGCAG 1 cut(s) 965
Bsh1236I CGCG 1 cut(s) 692
BshFI GGCC 2 cut(s) 333, 818
BshNI GGYRCC 1 cut(s) 171
BshTI ACCGGT 1 cut(s) 644
BshVI ATCGAT 1 cut(s) 369
BsiHKAI GWGCWC 2 cut(s) 182, 1003
BsiHKCI CYCGRG 2 cut(s) 175, 674
BsiSI CCGG 3 cut(s) 446, 624, 645
BslFI GGGAC 2 cut(s) 755, 1103
BslI CCNNNNNNNGG 2 cut(s) 563, 737
BsmAI GTCTC 5 cut(s) 9, 40, 235, 316, 554
BsmFI GGGAC 2 cut(s) 755, 1103
BsnI GGCC 2 cut(s) 333, 818
BsoBI CYCGRG 2 cut(s) 175, 674
Bsp1286I GDGCHC 2 cut(s) 182, 1003
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 6 cut(s) 71, 259, 370, 574, 682, 975
Bsp1720I GCTNAGC 1 cut(s) 793
BspACI CCGC 2 cut(s) 300, 789
BspANI GGCC 2 cut(s) 333, 818
BspCNI CTCAG 5 cut(s) 34, 50, 550, 1117, 1122
BspDI ATCGAT 1 cut(s) 369
BspFNI CGCG 1 cut(s) 692
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 3 cut(s) 173, 261, 729
BspMAI CTGCAG 1 cut(s) 599
BspPI GGATC 5 cut(s) 66, 254, 267, 569, 677
BspQI GCTCTTC 1 cut(s) 809
BspT107I GGYRCC 1 cut(s) 171
BspTI CTTAAG 1 cut(s) 1055
BsrFI RCCGGY 1 cut(s) 644
BsrGI TGTACA 1 cut(s) 276
BsrI ACTGG 2 cut(s) 398, 568
BssAI RCCGGY 1 cut(s) 644
BssECI CCNNGG 5 cut(s) 219, 285, 343, 711, 1037
BssMI GATC 6 cut(s) 71, 259, 370, 574, 682, 975
BssT1I CCWWGG 2 cut(s) 219, 285
Bst2UI CCWGG 3 cut(s) 345, 426, 1038
Bst4CI ACNGT 4 cut(s) 171, 229, 413, 512
Bst6I CTCTTC 3 cut(s) 809, 840, 1065
BstAFI CTTAAG 1 cut(s) 1055
BstAUI TGTACA 1 cut(s) 276
BstBAI YACGTR 2 cut(s) 536, 943
BstDSI CCRYGG 1 cut(s) 711
BstEII GGTNACC 1 cut(s) 380
BstF5I GGATG 1 cut(s) 871
BstFNI CGCG 1 cut(s) 692
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 2 cut(s) 454, 468
BstKTI GATC 6 cut(s) 74, 262, 373, 577, 685, 978
BstMAI GTCTC 5 cut(s) 9, 40, 235, 316, 554
BstMBI GATC 6 cut(s) 71, 259, 370, 574, 682, 975
BstMWI GCNNNNNNNGC 2 cut(s) 105, 1105
BstNI CCWGG 3 cut(s) 345, 426, 1038
BstPI GGTNACC 1 cut(s) 380
BstSCI CCNGG 5 cut(s) 343, 424, 445, 622, 1036
BstSFI CTRYAG 2 cut(s) 237, 595
BstSNI TACGTA 1 cut(s) 536
BstUI CGCG 1 cut(s) 692
BstV1I GCAGC 1 cut(s) 609
BstV2I GAAGAC 3 cut(s) 70, 149, 255
BstX2I RGATCY 4 cut(s) 71, 259, 574, 975
BstYI RGATCY 4 cut(s) 71, 259, 574, 975
Bsu15I ATCGAT 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 2 cut(s) 333, 818
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 1 cut(s) 871
BtsI GCAGTG 1 cut(s) 1130
BtsIMutI CAGTG 1 cut(s) 1130
CciI TCATGA 1 cut(s) 373
CfoI GCGC 2 cut(s) 454, 468
Cfr10I RCCGGY 1 cut(s) 644
Cfr13I GGNCC 2 cut(s) 332, 647
ClaI ATCGAT 1 cut(s) 369
Csp6I GTAC 6 cut(s) 172, 277, 493, 533, 859, 940
CspAI ACCGGT 1 cut(s) 644
CspCI CAANNNNNGTGG 2 cut(s) 910, 945
CviAII CATG 3 cut(s) 114, 374, 760
CviQI GTAC 6 cut(s) 172, 277, 493, 533, 859, 940
DpnI GATC 6 cut(s) 73, 261, 372, 576, 684, 977
DpnII GATC 6 cut(s) 71, 259, 370, 574, 682, 975
DraIII CACNNNGTG 1 cut(s) 463
EaeI YGGCCR 1 cut(s) 816
Eam1104I CTCTTC 3 cut(s) 809, 840, 1065
EarI CTCTTC 3 cut(s) 809, 840, 1065
Ecl136II GAGCTC 1 cut(s) 1001
Eco105I TACGTA 1 cut(s) 536
Eco130I CCWWGG 2 cut(s) 219, 285
Eco24I GRGCYC 1 cut(s) 1003
Eco47I GGWCC 1 cut(s) 647
Eco53kI GAGCTC 1 cut(s) 1001
Eco81I CCTNAGG 1 cut(s) 255
Eco88I CYCGRG 2 cut(s) 175, 674
Eco91I GGTNACC 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 1001
EcoO65I GGTNACC 1 cut(s) 380
EcoRII CCWGG 3 cut(s) 343, 424, 1036
EcoT14I CCWWGG 2 cut(s) 219, 285
EcoT38I GRGCYC 1 cut(s) 1003
ErhI CCWWGG 2 cut(s) 219, 285
FaeI CATG 3 cut(s) 117, 377, 763
FalI AAGNNNNNCTT 2 cut(s) 1038, 1070
FaqI GGGAC 2 cut(s) 755, 1103
FatI CATG 3 cut(s) 113, 373, 759
Fnu4HI GCNGC 2 cut(s) 598, 790
FokI GGATG 1 cut(s) 858
FriOI GRGCYC 1 cut(s) 1003
Fsp4HI GCNGC 2 cut(s) 598, 790
GlaI GCGC 2 cut(s) 453, 467
GluI GCNGC 2 cut(s) 598, 790
GsaI CCCAGC 1 cut(s) 1090
GsuI CTGGAG 2 cut(s) 366, 408
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 2 cut(s) 333, 818
HapII CCGG 3 cut(s) 446, 624, 645
HhaI GCGC 2 cut(s) 454, 468
Hin1II CATG 3 cut(s) 117, 377, 763
Hin6I GCGC 2 cut(s) 452, 466
HinP1I GCGC 2 cut(s) 452, 466
HindIII AAGCTT 3 cut(s) 97, 983, 1097
HinfI GANTC 6 cut(s) 290, 418, 591, 614, 634, 1042
HpaII CCGG 3 cut(s) 446, 624, 645
HphI GGTGA 4 cut(s) 440, 634, 638, 1091
Hpy166II GTNNAC 2 cut(s) 533, 852
Hpy188III TCNNGA 5 cut(s) 82, 374, 875, 1046, 1111
Hpy8I GTNNAC 2 cut(s) 533, 852
Hpy99I CGWCG 1 cut(s) 753
HpyAV CCTTC 5 cut(s) 392, 395, 588, 652, 842
HpyCH4III ACNGT 4 cut(s) 171, 229, 413, 512
HpyCH4IV ACGT 6 cut(s) 58, 535, 748, 768, 942, 1131
HpyCH4V TGCA 4 cut(s) 482, 597, 946, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 1105
HpySE526I ACGT 6 cut(s) 58, 535, 748, 768, 942, 1131
Hsp92II CATG 3 cut(s) 117, 377, 763
HspAI GCGC 2 cut(s) 452, 466
KpnI GGTACC 1 cut(s) 175
Kzo9I GATC 6 cut(s) 71, 259, 370, 574, 682, 975
LguI GCTCTTC 1 cut(s) 809
LmnI GCTCC 4 cut(s) 319, 449, 733, 998
Lsp1109I GCAGC 1 cut(s) 609
LweI GCATC 2 cut(s) 491, 1023
MaeII ACGT 6 cut(s) 58, 535, 748, 768, 942, 1131
MaeIII GTNAC 4 cut(s) 223, 380, 407, 626
MalI GATC 6 cut(s) 73, 261, 372, 576, 684, 977
MboI GATC 6 cut(s) 71, 259, 370, 574, 682, 975
MfeI CAATTG 2 cut(s) 45, 477
MflI RGATCY 4 cut(s) 71, 259, 574, 975
MhlI GDGCHC 2 cut(s) 182, 1003
MlsI TGGCCA 1 cut(s) 818
MluCI AATT 2 cut(s) 45, 477
MluNI TGGCCA 1 cut(s) 818
MlyI GAGTC 2 cut(s) 299, 600
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 5 cut(s) 273, 432, 731, 904, 1070
Mox20I TGGCCA 1 cut(s) 818
MscI TGGCCA 1 cut(s) 818
MseI TTAA 2 cut(s) 1023, 1056
Msp20I TGGCCA 1 cut(s) 818
MspCI CTTAAG 1 cut(s) 1055
MspI CCGG 3 cut(s) 446, 624, 645
MspR9I CCNGG 5 cut(s) 345, 426, 447, 624, 1038
MunI CAATTG 2 cut(s) 45, 477
MvaI CCWGG 3 cut(s) 345, 426, 1038
MvnI CGCG 1 cut(s) 692
MwoI GCNNNNNNNGC 2 cut(s) 105, 1105
NciI CCSGG 2 cut(s) 447, 624
NdeII GATC 6 cut(s) 71, 259, 370, 574, 682, 975
NlaIII CATG 3 cut(s) 117, 377, 763
NlaIV GGNNCC 3 cut(s) 173, 261, 729
NmuCI GTSAC 1 cut(s) 626
PagI TCATGA 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 809
PfeI GAWTC 4 cut(s) 418, 614, 634, 1042
PinAI ACCGGT 1 cut(s) 644
PkrI GCNGC 2 cut(s) 599, 791
PleI GAGTC 2 cut(s) 298, 599
PpsI GAGTC 2 cut(s) 298, 599
Ppu21I YACGTR 2 cut(s) 536, 943
Psp124BI GAGCTC 1 cut(s) 1003
Psp1406I AACGTT 1 cut(s) 58
Psp6I CCWGG 3 cut(s) 343, 424, 1036
PspEI GGTNACC 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 1086
PspGI CCWGG 3 cut(s) 343, 424, 1036
PspN4I GGNNCC 3 cut(s) 173, 261, 729
PspPI GGNCC 2 cut(s) 332, 647
PstI CTGCAG 1 cut(s) 599
PsuI RGATCY 4 cut(s) 71, 259, 574, 975
RsaI GTAC 6 cut(s) 173, 278, 494, 534, 860, 941
RsaNI GTAC 6 cut(s) 172, 277, 493, 533, 859, 940
SacI GAGCTC 1 cut(s) 1003
SapI GCTCTTC 1 cut(s) 809
SaqAI TTAA 2 cut(s) 1023, 1056
SatI GCNGC 2 cut(s) 598, 790
Sau3AI GATC 6 cut(s) 71, 259, 370, 574, 682, 975
Sau96I GGNCC 2 cut(s) 332, 647
SchI GAGTC 2 cut(s) 299, 600
ScrFI CCNGG 5 cut(s) 345, 426, 447, 624, 1038
SduI GDGCHC 2 cut(s) 182, 1003
SfaNI GCATC 2 cut(s) 491, 1023
SfcI CTRYAG 2 cut(s) 237, 595
SinI GGWCC 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
SnaBI TACGTA 1 cut(s) 536
Sse9I AATT 2 cut(s) 45, 477
SsiI CCGC 2 cut(s) 300, 789
SstI GAGCTC 1 cut(s) 1003
StyD4I CCNGG 5 cut(s) 343, 424, 445, 622, 1036
StyI CCWWGG 2 cut(s) 219, 285
TaaI ACNGT 4 cut(s) 171, 229, 413, 512
TaiI ACGT 6 cut(s) 61, 538, 751, 771, 945, 1134
TaqI TCGA 3 cut(s) 369, 751, 891
TasI AATT 2 cut(s) 45, 477
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 792
TfiI GAWTC 4 cut(s) 418, 614, 634, 1042
Tru1I TTAA 2 cut(s) 1023, 1056
Tru9I TTAA 2 cut(s) 1023, 1056
TscAI CASTG 1 cut(s) 1130
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 1 cut(s) 597
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 1 cut(s) 748
TspGWI ACGGA 3 cut(s) 64, 510, 603
TspRI CASTG 1 cut(s) 1130
Vha464I CTTAAG 1 cut(s) 1055
VpaK11BI GGWCC 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.